Wall clock time and date at job start Tue Mar 31 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86796 * 119.99804 * 2 1 4 4 H 1.48506 * 109.47341 * 274.73468 * 3 2 1 5 5 H 1.48499 * 109.47302 * 34.73301 * 3 2 1 6 6 H 1.48501 * 109.46979 * 154.73526 * 3 2 1 7 7 C 1.37872 * 119.99798 * 179.72870 * 2 1 3 8 8 H 1.07998 * 120.00145 * 358.62313 * 7 2 1 9 9 C 1.50701 * 120.00034 * 178.63236 * 7 2 1 10 10 C 1.53000 * 115.54753 * 294.78836 * 9 7 2 11 11 N 1.46501 * 109.47111 * 299.53655 * 10 9 7 12 12 C 1.34770 * 120.00259 * 184.51511 * 11 10 9 13 13 O 1.21583 * 120.00109 * 4.97661 * 12 11 10 14 14 N 1.34781 * 120.00182 * 184.97200 * 12 11 10 15 15 C 1.46497 * 120.00040 * 185.02652 * 14 12 11 16 16 H 1.09000 * 109.46875 * 324.99969 * 15 14 12 17 17 C 1.52999 * 109.47312 * 85.00243 * 15 14 12 18 18 C 1.52996 * 109.46912 * 179.97438 * 17 15 14 19 19 C 1.52996 * 109.47659 * 299.99869 * 18 17 15 20 20 C 1.53004 * 109.47149 * 59.99931 * 19 18 17 21 21 C 1.53001 * 109.46873 * 205.00287 * 15 14 12 22 22 H 1.09000 * 109.47110 * 299.99538 * 21 15 14 23 23 O 1.42896 * 109.47397 * 59.99884 * 21 15 14 24 24 C 1.52993 * 117.50218 * 149.11418 * 9 7 2 25 25 C 1.53004 * 117.50181 * 80.45169 * 9 7 2 26 26 H 0.96999 * 119.99916 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47425 * 59.54126 * 10 9 7 28 28 H 1.09005 * 109.47211 * 179.54062 * 10 9 7 29 29 H 0.97001 * 119.99467 * 4.52635 * 11 10 9 30 30 H 0.96999 * 119.99968 * 5.02851 * 14 12 11 31 31 H 1.09003 * 109.46813 * 300.00000 * 17 15 14 32 32 H 1.08999 * 109.47060 * 59.99584 * 17 15 14 33 33 H 1.09005 * 109.47448 * 60.00437 * 18 17 15 34 34 H 1.09007 * 109.47041 * 179.97438 * 18 17 15 35 35 H 1.08995 * 109.47727 * 180.02562 * 19 18 17 36 36 H 1.08999 * 109.46757 * 300.00558 * 19 18 17 37 37 H 1.09000 * 109.47092 * 60.00193 * 20 19 18 38 38 H 1.08999 * 109.47500 * 180.02562 * 20 19 18 39 39 H 0.96703 * 114.00028 * 179.97438 * 23 21 15 40 40 H 1.08998 * 117.50207 * 359.97438 * 24 9 7 41 41 H 1.09006 * 117.50093 * 145.02491 * 24 9 7 42 42 H 1.08997 * 117.49950 * 214.98418 * 25 9 7 43 43 H 1.09007 * 117.49769 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3966 2.1043 -1.3953 5 1 1.5002 2.6217 0.7977 6 1 3.5932 1.4134 0.5976 7 6 2.0046 -1.1940 0.0057 8 1 1.4648 -2.1291 0.0326 9 6 3.5113 -1.1944 -0.0255 10 6 4.1450 -0.6368 -1.3016 11 7 3.7172 -1.4392 -2.4502 12 6 4.2241 -1.1887 -3.6735 13 8 5.1020 -0.3586 -3.8095 14 7 3.7578 -1.8583 -4.7463 15 6 4.3826 -1.6670 -6.0575 16 1 4.7077 -0.6315 -6.1575 17 6 5.5915 -2.5959 -6.1868 18 6 6.2435 -2.3966 -7.5564 19 6 5.2305 -2.7220 -8.6559 20 6 4.0216 -1.7931 -8.5266 21 6 3.3698 -1.9920 -7.1573 22 1 3.0447 -3.0276 -7.0573 23 8 2.2407 -1.1245 -7.0365 24 6 4.2321 -2.3474 0.6757 25 6 4.2453 -0.9472 1.2940 26 1 -0.4850 0.8400 -0.0004 27 1 3.8290 0.3968 -1.4425 28 1 5.2309 -0.6761 -1.2151 29 1 3.0690 -2.1508 -2.3301 30 1 3.0086 -2.4668 -4.6502 31 1 6.3130 -2.3643 -5.4033 32 1 5.2663 -3.6314 -6.0868 33 1 6.5687 -1.3610 -7.6569 34 1 7.1051 -3.0580 -7.6484 35 1 5.6952 -2.5804 -9.6316 36 1 4.9054 -3.7575 -8.5554 37 1 4.3466 -0.7576 -8.6270 38 1 3.2996 -2.0252 -9.3096 39 1 1.5566 -1.2742 -7.7035 40 1 3.6167 -3.1056 1.1599 41 1 5.1581 -2.7085 0.2281 42 1 5.1798 -0.3877 1.2529 43 1 3.6384 -0.7838 2.1846 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408385500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:37 Heat of formation + Delta-G solvation = -72.828233 kcal Electronic energy + Delta-G solvation = -22971.448176 eV Core-core repulsion = 19630.622898 eV Total energy + Delta-G solvation = -3340.825279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.00864 -38.60689 -36.98206 -35.68945 -33.84730 -33.24736 -32.14331 -30.12358 -28.92994 -26.48471 -24.95908 -22.93547 -22.23500 -21.56083 -20.31826 -20.04398 -19.22940 -17.69412 -17.35006 -16.79065 -16.05319 -15.20965 -14.97724 -14.74512 -14.45938 -14.26702 -13.97520 -13.78700 -13.43010 -13.12459 -12.88341 -12.86935 -12.69263 -12.22318 -12.07202 -11.72292 -11.41421 -11.06882 -11.02859 -10.91844 -10.66062 -10.54259 -10.37984 -10.18471 -10.11608 -9.68172 -9.45066 -9.10750 -8.79862 -8.70476 -8.50173 -8.04552 -6.14114 -4.17416 3.17908 3.34837 3.43642 3.48973 3.77856 3.96570 4.43159 4.47168 4.52803 4.73829 4.77509 4.96746 5.00321 5.06714 5.16490 5.23222 5.25205 5.28467 5.49483 5.67237 5.74420 5.78122 5.84718 5.91266 5.93693 6.02105 6.12145 6.18706 6.22528 6.32636 6.49059 6.55620 6.75041 6.86749 6.98697 7.12204 7.29696 7.53506 7.55111 7.71388 8.44281 8.67238 8.86764 9.20674 9.49732 10.96828 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022905 B = 0.004412 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.142806 B = 6344.425266 C = 6907.295182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.084 3.916 3 Si 0.869 3.131 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.250 1.250 7 C -0.489 4.489 8 H 0.077 0.923 9 C -0.017 4.017 10 C 0.174 3.826 11 N -0.719 5.719 12 C 0.703 3.297 13 O -0.608 6.608 14 N -0.741 5.741 15 C 0.175 3.825 16 H 0.092 0.908 17 C -0.129 4.129 18 C -0.119 4.119 19 C -0.118 4.118 20 C -0.149 4.149 21 C 0.098 3.902 22 H 0.058 0.942 23 O -0.556 6.556 24 C -0.180 4.180 25 C -0.185 4.185 26 H 0.265 0.735 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.403 0.597 30 H 0.396 0.604 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.375 0.625 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.225 -7.277 -16.102 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.119 4.119 3 Si 0.697 3.303 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.174 1.174 7 C -0.526 4.526 8 H 0.095 0.905 9 C -0.018 4.018 10 C 0.050 3.950 11 N -0.372 5.372 12 C 0.403 3.597 13 O -0.488 6.488 14 N -0.395 5.395 15 C 0.068 3.932 16 H 0.110 0.890 17 C -0.168 4.168 18 C -0.157 4.157 19 C -0.156 4.156 20 C -0.187 4.187 21 C 0.038 3.962 22 H 0.076 0.924 23 O -0.361 6.361 24 C -0.217 4.217 25 C -0.224 4.224 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.238 0.762 30 H 0.229 0.771 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.222 0.778 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.200 -6.150 -15.668 19.182 hybrid contribution -0.704 0.145 -0.391 0.818 sum 8.496 -6.005 -16.059 19.135 Atomic orbital electron populations 1.69887 1.06368 1.27237 1.49582 1.24899 0.94511 0.99082 0.93432 0.87002 0.81346 0.83526 0.78425 1.20464 1.21961 1.17380 1.20223 0.86109 0.94432 1.51815 0.90472 1.19608 0.95110 0.98683 0.88445 1.20889 0.96340 0.93572 0.84225 1.44978 1.47528 1.38961 1.05727 1.15984 0.81922 0.81120 0.80721 1.90843 1.34843 1.37728 1.85379 1.44949 1.37882 1.49686 1.07011 1.20663 0.90889 1.01192 0.80423 0.88985 1.21964 0.97464 0.99597 0.97764 1.21538 0.97978 1.02273 0.93960 1.21517 0.95638 0.99395 0.99021 1.22240 0.98262 1.01405 0.96815 1.22065 0.86670 0.93239 0.94179 0.92408 1.86675 1.30860 1.61053 1.57493 1.22791 1.01157 0.91831 1.05913 1.23024 1.01337 0.98668 0.99347 0.92503 0.93187 0.93406 0.76223 0.77072 0.90588 0.91710 0.91503 0.91515 0.91585 0.91768 0.90756 0.91381 0.77810 0.89694 0.90925 0.91103 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.96 55.43 0.77 -25.91 16 2 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 3 Si 0.87 21.99 24.75 -169.99 -4.21 17.78 16 4 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.25 -5.96 5.86 56.52 0.33 -5.63 16 7 C -0.49 -12.99 8.95 -34.44 -0.31 -13.30 16 8 H 0.08 2.21 8.06 -52.49 -0.42 1.78 16 9 C -0.02 -0.39 0.89 -155.66 -0.14 -0.53 16 10 C 0.17 3.90 5.14 -4.04 -0.02 3.88 16 11 N -0.72 -14.67 5.45 -65.22 -0.36 -15.03 16 12 C 0.70 14.13 8.52 -86.92 -0.74 13.39 16 13 O -0.61 -14.24 15.96 5.29 0.08 -14.15 16 14 N -0.74 -11.62 4.95 -58.68 -0.29 -11.91 16 15 C 0.17 2.35 2.19 -67.93 -0.15 2.21 16 16 H 0.09 1.52 7.51 -51.93 -0.39 1.13 16 17 C -0.13 -1.46 5.50 -26.73 -0.15 -1.60 16 18 C -0.12 -1.06 5.92 -26.74 -0.16 -1.22 16 19 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 20 C -0.15 -1.22 5.54 -26.75 -0.15 -1.36 16 21 C 0.10 1.02 2.98 -26.75 -0.08 0.94 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 O -0.56 -6.70 13.18 -35.23 -0.46 -7.16 16 24 C -0.18 -3.53 9.95 -26.70 -0.27 -3.80 16 25 C -0.19 -3.87 8.32 -26.69 -0.22 -4.09 16 26 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.05 1.24 4.78 -51.93 -0.25 0.99 16 28 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 29 H 0.40 7.71 8.20 -40.82 -0.33 7.38 16 30 H 0.40 5.43 8.63 -40.82 -0.35 5.08 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.38 2.74 9.08 45.56 0.41 3.16 16 40 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -33.23 342.10 -8.39 -41.63 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -6.45 Total: 13.83 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.63 Total: -4.24 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.13 Total: -52.84 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.38 Total: -21.32 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.21 Total: 17.78 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.23 -8.39 -41.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408385500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.202 kcal (2) G-P(sol) polarization free energy of solvation -33.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds