Wall clock time and date at job start Tue Mar 31 2020 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00304 * 2 1 4 4 H 1.48501 * 109.47188 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47274 * 300.00265 * 3 2 1 6 6 H 1.48504 * 109.47168 * 60.00568 * 3 2 1 7 7 C 1.37880 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00226 * 164.24097 * 7 2 1 9 9 C 1.50701 * 119.99853 * 344.24970 * 7 2 1 10 10 C 1.53001 * 115.56220 * 322.15048 * 9 7 2 11 11 N 1.46496 * 109.47321 * 268.85093 * 10 9 7 12 12 C 1.34776 * 120.00369 * 185.10823 * 11 10 9 13 13 O 1.21586 * 119.99897 * 355.23700 * 12 11 10 14 14 N 1.34772 * 120.00360 * 175.23781 * 12 11 10 15 15 C 1.46924 * 120.62882 * 5.24059 * 14 12 11 16 16 C 1.53193 * 108.77507 * 126.37305 * 15 14 12 17 17 C 1.53040 * 109.31439 * 54.63530 * 16 15 14 18 18 C 1.53038 * 109.53644 * 298.63587 * 17 16 15 19 19 H 1.09006 * 109.49812 * 301.41404 * 18 17 16 20 20 C 1.52997 * 109.50054 * 181.31985 * 18 17 16 21 21 O 1.42899 * 109.47636 * 175.00025 * 20 18 17 22 22 C 1.46927 * 120.63464 * 184.96434 * 14 12 11 23 23 C 1.53005 * 117.50150 * 176.46330 * 9 7 2 24 24 C 1.53005 * 117.50039 * 107.83880 * 9 7 2 25 25 H 0.97005 * 119.99310 * 5.01036 * 1 2 3 26 26 H 1.09005 * 109.46809 * 28.84714 * 10 9 7 27 27 H 1.08997 * 109.47144 * 148.84466 * 10 9 7 28 28 H 0.96999 * 120.00129 * 5.10718 * 11 10 9 29 29 H 1.09004 * 109.58511 * 246.15837 * 15 14 12 30 30 H 1.09000 * 109.59023 * 6.43843 * 15 14 12 31 31 H 1.09006 * 109.49744 * 174.58532 * 16 15 14 32 32 H 1.08998 * 109.49834 * 294.64787 * 16 15 14 33 33 H 1.09000 * 109.46180 * 58.65717 * 17 16 15 34 34 H 1.08997 * 109.45987 * 178.61904 * 17 16 15 35 35 H 1.09005 * 109.46638 * 294.99952 * 20 18 17 36 36 H 1.08998 * 109.47203 * 54.99854 * 20 18 17 37 37 H 0.96691 * 114.00124 * 179.97438 * 21 20 18 38 38 H 1.09003 * 109.57845 * 353.41782 * 22 14 12 39 39 H 1.08995 * 109.59073 * 113.83655 * 22 14 12 40 40 H 1.08998 * 117.49815 * 145.01991 * 23 9 7 41 41 H 1.08997 * 117.49361 * 359.97438 * 23 9 7 42 42 H 1.08994 * 117.49678 * 0.02562 * 24 9 7 43 43 H 1.08994 * 117.51801 * 214.96944 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0541 -1.2116 -0.2545 9 6 1.2934 -2.4748 0.3532 10 6 0.2549 -2.3662 1.4714 11 7 0.8942 -2.6426 2.7602 12 6 0.1499 -2.7056 3.8820 13 8 -1.0376 -2.4480 3.8389 14 7 0.7217 -3.0541 5.0516 15 6 2.1740 -3.2567 5.1437 16 6 2.7226 -2.3849 6.2776 17 6 1.9615 -2.6956 7.5685 18 6 0.4788 -2.3667 7.3803 19 1 0.3703 -1.3149 7.1153 20 6 -0.2756 -2.6466 8.6815 21 8 -1.6356 -2.2306 8.5427 22 6 -0.0944 -3.2328 6.2602 23 6 2.0914 -3.7766 0.2543 24 6 1.0096 -3.4618 -0.7810 25 1 -0.4849 0.8369 -0.0734 26 1 -0.1637 -1.3598 1.4820 27 1 -0.5421 -3.0894 1.2986 28 1 1.8533 -2.7803 2.8062 29 1 2.3840 -4.3053 5.3546 30 1 2.6431 -2.9725 4.2017 31 1 3.7822 -2.5974 6.4199 32 1 2.5935 -1.3330 6.0228 33 1 2.0712 -3.7531 7.8091 34 1 2.3664 -2.0943 8.3824 35 1 -0.2426 -3.7144 8.8981 36 1 0.1913 -2.0956 9.4979 37 1 -2.1747 -2.3788 9.3316 38 1 -1.1215 -2.9304 6.0554 39 1 -0.0733 -4.2794 6.5640 40 1 1.8765 -4.5554 0.9858 41 1 3.1306 -3.7066 -0.0670 42 1 1.3377 -3.1849 -1.7829 43 1 0.0833 -4.0339 -0.7307 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408385689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:48 Heat of formation + Delta-G solvation = -55.565545 kcal Electronic energy + Delta-G solvation = -23154.744582 eV Core-core repulsion = 19814.667869 eV Total energy + Delta-G solvation = -3340.076712 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.00868 -38.03714 -36.77935 -36.19734 -33.44833 -32.45885 -32.22463 -31.31503 -26.65137 -25.82566 -25.47749 -24.13983 -22.16808 -21.29087 -20.43172 -19.24193 -19.02423 -17.78747 -17.43276 -16.17863 -15.78685 -15.34393 -14.99670 -14.65094 -14.30773 -14.18667 -13.97248 -13.63677 -13.42360 -13.32332 -12.84552 -12.70286 -12.45420 -11.77753 -11.63561 -11.51204 -11.19298 -11.03200 -10.95835 -10.79447 -10.68581 -10.51793 -10.47979 -10.30294 -10.14112 -9.59682 -9.27056 -9.15115 -8.78988 -8.40983 -8.18590 -7.73500 -6.08286 -4.11504 3.17224 3.25218 3.35171 3.37239 3.88089 4.00758 4.34345 4.52896 4.67603 4.73850 4.91660 4.92670 5.00959 5.10905 5.30119 5.40141 5.43249 5.49381 5.52910 5.58707 5.75605 5.83026 5.90460 6.03345 6.03896 6.21567 6.30884 6.34893 6.54256 6.62065 6.77625 6.81461 6.98747 7.05788 7.30321 7.48725 7.49120 7.59054 7.72176 8.03505 8.38604 8.69354 8.85943 9.33750 9.47168 10.93387 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018555 B = 0.004630 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.695157 B = 6045.468893 C = 6350.267521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.072 3.928 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.497 4.497 8 H 0.063 0.937 9 C 0.041 3.959 10 C 0.161 3.839 11 N -0.727 5.727 12 C 0.700 3.300 13 O -0.595 6.595 14 N -0.637 5.637 15 C 0.111 3.889 16 C -0.134 4.134 17 C -0.110 4.110 18 C -0.106 4.106 19 H 0.082 0.918 20 C 0.085 3.915 21 O -0.568 6.568 22 C 0.142 3.858 23 C -0.210 4.210 24 C -0.193 4.193 25 H 0.265 0.735 26 H 0.116 0.884 27 H 0.033 0.967 28 H 0.389 0.611 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.377 0.623 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.504 -6.834 16.842 18.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.132 4.132 3 Si 0.718 3.282 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.534 4.534 8 H 0.081 0.919 9 C 0.040 3.960 10 C 0.039 3.961 11 N -0.382 5.382 12 C 0.401 3.599 13 O -0.473 6.473 14 N -0.376 5.376 15 C -0.013 4.013 16 C -0.173 4.173 17 C -0.147 4.147 18 C -0.126 4.126 19 H 0.101 0.899 20 C 0.006 3.994 21 O -0.373 6.373 22 C 0.018 3.982 23 C -0.248 4.248 24 C -0.231 4.231 25 H 0.075 0.925 26 H 0.134 0.866 27 H 0.052 0.948 28 H 0.225 0.775 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.223 0.777 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.655 -6.346 16.189 17.768 hybrid contribution 0.858 0.549 0.522 1.144 sum 4.512 -5.797 16.710 18.254 Atomic orbital electron populations 1.69842 1.06078 1.27164 1.47307 1.24995 0.94733 0.99233 0.94232 0.86558 0.80250 0.83581 0.77784 1.19641 1.20963 1.20753 1.20534 0.95809 0.89559 1.47452 0.91913 1.19197 0.94979 0.88606 0.93194 1.21216 0.93060 1.03748 0.78109 1.45564 1.10421 1.75341 1.06873 1.15952 0.85279 0.78373 0.80263 1.90873 1.14481 1.56957 1.85027 1.47265 1.06850 1.74825 1.08679 1.21576 0.81122 0.99189 0.99412 1.21903 0.99451 1.01089 0.94821 1.21467 0.93896 1.01567 0.97791 1.21491 0.94431 1.02197 0.94443 0.89914 1.22149 0.82482 0.97937 0.96803 1.86582 1.21617 1.86864 1.42231 1.21204 0.96681 0.97611 0.82679 1.22852 0.96245 1.02048 1.03652 1.22960 0.97749 1.06657 0.95750 0.92462 0.86608 0.94817 0.77520 0.91834 0.89958 0.90617 0.91146 0.91681 0.91725 0.93611 0.93610 0.77680 0.88272 0.92696 0.91401 0.90576 0.90193 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.56 11.01 55.43 0.61 -23.95 16 2 C 0.07 1.94 5.08 -17.82 -0.09 1.85 16 3 Si 0.89 20.81 29.57 -169.99 -5.03 15.78 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.50 -13.15 9.00 -34.44 -0.31 -13.46 16 8 H 0.06 1.64 7.86 -52.49 -0.41 1.23 16 9 C 0.04 1.00 1.85 -155.65 -0.29 0.71 16 10 C 0.16 4.01 5.43 -4.04 -0.02 3.99 16 11 N -0.73 -15.51 5.31 -65.23 -0.35 -15.86 16 12 C 0.70 15.00 8.30 -86.92 -0.72 14.28 16 13 O -0.59 -15.26 15.77 5.29 0.08 -15.18 16 14 N -0.64 -10.44 2.98 -178.77 -0.53 -10.98 16 15 C 0.11 1.38 6.39 -3.71 -0.02 1.36 16 16 C -0.13 -1.39 6.08 -26.61 -0.16 -1.56 16 17 C -0.11 -1.01 5.17 -26.69 -0.14 -1.15 16 18 C -0.11 -1.25 2.56 -90.73 -0.23 -1.48 16 19 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 20 C 0.08 0.79 6.43 37.16 0.24 1.03 16 21 O -0.57 -6.27 13.30 -35.23 -0.47 -6.74 16 22 C 0.14 2.07 5.53 -3.93 -0.02 2.05 16 23 C -0.21 -4.38 9.47 -26.72 -0.25 -4.63 16 24 C -0.19 -4.37 9.88 -26.73 -0.26 -4.63 16 25 H 0.27 7.19 8.32 -40.82 -0.34 6.85 16 26 H 0.12 3.32 5.30 -51.93 -0.27 3.05 16 27 H 0.03 0.86 7.87 -51.93 -0.41 0.45 16 28 H 0.39 7.38 5.68 -40.82 -0.23 7.15 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.07 5.64 -51.93 -0.29 0.77 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.38 2.23 9.12 45.56 0.42 2.65 16 38 H 0.10 1.78 6.83 -51.93 -0.35 1.43 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 43 H 0.07 1.44 8.03 -51.93 -0.42 1.03 16 LS Contribution 342.78 15.07 5.17 5.17 Total: -1.00 -32.70 342.78 -8.99 -41.69 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -6.19 Total: 11.69 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.29 Total: -1.64 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.27 Total: -50.78 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.39 Total: -21.91 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.70 -8.99 -41.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408385689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.873 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds