Wall clock time and date at job start Tue Mar 31 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99896 * 2 1 4 4 H 1.48501 * 109.46974 * 239.99347 * 3 2 1 5 5 H 1.48498 * 109.47099 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47281 * 119.99771 * 3 2 1 7 7 C 1.37876 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99547 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00344 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47155 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99724 * 180.02562 * 10 9 7 12 12 O 1.21581 * 120.00423 * 5.07236 * 11 10 9 13 13 N 1.34781 * 119.99700 * 185.07803 * 11 10 9 14 14 C 1.46923 * 120.63003 * 354.95964 * 13 11 10 15 15 C 1.53191 * 108.77422 * 126.39719 * 14 13 11 16 16 C 1.53041 * 109.31369 * 54.63157 * 15 14 13 17 17 C 1.53039 * 109.54144 * 298.63844 * 16 15 14 18 18 H 1.09003 * 109.52005 * 301.39947 * 17 16 15 19 19 O 1.42897 * 109.49997 * 181.31630 * 17 16 15 20 20 C 1.42901 * 114.00010 * 150.15658 * 19 17 16 21 21 C 1.52997 * 109.47165 * 179.97438 * 20 19 17 22 22 C 1.52998 * 117.50385 * 243.75045 * 21 20 19 23 23 C 1.53001 * 117.50094 * 175.09028 * 21 20 19 24 24 C 1.46928 * 120.62821 * 174.96308 * 13 11 10 25 25 H 0.96993 * 120.00209 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46698 * 59.99970 * 9 7 2 27 27 H 1.09000 * 109.47223 * 299.99847 * 9 7 2 28 28 H 0.96997 * 120.00459 * 359.97438 * 10 9 7 29 29 H 1.08993 * 109.58615 * 6.60658 * 14 13 11 30 30 H 1.09004 * 109.58713 * 246.18293 * 14 13 11 31 31 H 1.08999 * 109.49436 * 294.68105 * 15 14 13 32 32 H 1.08996 * 109.50124 * 174.58625 * 15 14 13 33 33 H 1.09002 * 109.45761 * 178.61183 * 16 15 14 34 34 H 1.09003 * 109.45674 * 58.66054 * 16 15 14 35 35 H 1.08998 * 109.47217 * 300.00478 * 20 19 17 36 36 H 1.09006 * 109.46597 * 60.00115 * 20 19 17 37 37 H 1.09009 * 115.55107 * 29.42451 * 21 20 19 38 38 H 1.09001 * 117.49437 * 0.02562 * 22 21 20 39 39 H 1.08993 * 117.50012 * 145.01907 * 22 21 20 40 40 H 1.09000 * 117.49738 * 214.98761 * 23 21 20 41 41 H 1.08998 * 117.49448 * 359.97438 * 23 21 20 42 42 H 1.09004 * 109.58782 * 113.81715 * 24 13 11 43 43 H 1.08992 * 109.58777 * 353.39663 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8833 0.0000 12 8 0.5624 -5.1069 -0.0935 13 7 2.6253 -5.9063 0.1033 14 6 4.0735 -5.6584 0.1064 15 6 4.6842 -6.3196 1.3460 16 6 4.2999 -7.8008 1.3708 17 6 2.7775 -7.9333 1.4533 18 1 2.4160 -7.4291 2.3496 19 8 2.4213 -9.3161 1.5073 20 6 1.2150 -9.5778 2.2274 21 6 0.9327 -11.0815 2.2200 22 6 -0.3364 -11.5586 1.5111 23 6 -0.2589 -11.5807 3.0396 24 6 2.1451 -7.2904 0.2150 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 3.1567 -3.4355 0.0002 29 1 4.2604 -4.5850 0.1352 30 1 4.5191 -6.0850 -0.7923 31 1 4.3052 -5.8303 2.2432 32 1 5.7696 -6.2260 1.3108 33 1 4.7537 -8.2791 2.2388 34 1 4.6578 -8.2841 0.4617 35 1 1.3237 -9.2332 3.2558 36 1 0.3871 -9.0507 1.7532 37 1 1.8112 -11.7246 2.1662 38 1 -0.9700 -10.8012 1.0496 39 1 -0.2930 -12.5156 0.9911 40 1 -0.1645 -12.5522 3.5248 41 1 -0.8415 -10.8378 3.5845 42 1 2.4334 -7.8501 -0.6748 43 1 1.0598 -7.2936 0.3154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426448430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:23 Heat of formation + Delta-G solvation = -54.355526 kcal Electronic energy + Delta-G solvation = -22308.905455 eV Core-core repulsion = 18968.881212 eV Total energy + Delta-G solvation = -3340.024242 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.06181 -38.64727 -37.33435 -35.92650 -34.25034 -32.57389 -32.06825 -30.27345 -27.44660 -26.84996 -25.05704 -23.00097 -22.62151 -22.41324 -21.15096 -20.49949 -19.14054 -18.16689 -16.94932 -16.21074 -15.92414 -15.75859 -15.25028 -14.98759 -14.67766 -14.65058 -14.19321 -13.95820 -13.44355 -13.10947 -13.08764 -12.84911 -12.72176 -12.03199 -11.83765 -11.76452 -11.70637 -11.27153 -11.13571 -11.04272 -10.96358 -10.87543 -10.74511 -10.60297 -10.38523 -10.27810 -9.66511 -9.40074 -9.34960 -8.72744 -8.38562 -7.72796 -6.14984 -4.21775 2.99925 3.25744 3.30461 3.31902 3.39164 3.68029 3.87949 4.31317 4.50802 4.62595 4.64470 4.73980 4.77362 4.78554 4.98716 5.04567 5.11273 5.15298 5.20942 5.30276 5.37944 5.41820 5.47748 5.56732 5.63499 5.72516 5.76568 5.82648 5.85218 5.87302 5.95133 6.07315 6.15649 6.69204 7.09076 7.17533 7.50835 7.53598 7.57595 7.85772 8.02319 8.75323 8.89757 9.31188 9.47382 10.95273 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025577 B = 0.003212 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.486395 B = 8714.278401 C = 9463.708377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.266 3.734 10 N -0.729 5.729 11 C 0.697 3.303 12 O -0.598 6.598 13 N -0.636 5.636 14 C 0.110 3.890 15 C -0.132 4.132 16 C -0.112 4.112 17 C 0.077 3.923 18 H 0.064 0.936 19 O -0.377 6.377 20 C 0.090 3.910 21 C -0.152 4.152 22 C -0.178 4.178 23 C -0.176 4.176 24 C 0.114 3.886 25 H 0.266 0.734 26 H 0.025 0.975 27 H 0.023 0.977 28 H 0.386 0.614 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.972 -19.871 4.690 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.079 0.921 9 C 0.145 3.855 10 N -0.383 5.383 11 C 0.399 3.601 12 O -0.477 6.477 13 N -0.377 5.377 14 C -0.014 4.014 15 C -0.171 4.171 16 C -0.150 4.150 17 C 0.018 3.982 18 H 0.082 0.918 19 O -0.295 6.295 20 C 0.014 3.986 21 C -0.170 4.170 22 C -0.214 4.214 23 C -0.213 4.213 24 C -0.011 4.011 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.221 0.779 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.130 0.870 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.986 -19.991 4.548 21.660 hybrid contribution 0.741 1.188 0.126 1.406 sum 7.727 -18.803 4.675 20.859 Atomic orbital electron populations 1.69967 1.06093 1.27388 1.48834 1.24941 0.94913 0.99379 0.94754 0.86472 0.79407 0.82337 0.78660 1.20072 1.21070 1.20091 1.21175 0.93178 0.90445 1.53270 0.92063 1.18985 0.87812 0.81080 0.97591 1.45886 1.10861 1.04356 1.77167 1.16054 0.84753 0.81074 0.78258 1.90855 1.14459 1.83841 1.58580 1.47212 1.05382 1.05630 1.79440 1.21618 0.80853 1.01095 0.97821 1.21925 1.01001 0.95071 0.99104 1.21549 0.93727 0.96566 1.03147 1.22477 0.95688 0.81845 0.98174 0.91762 1.87859 1.41752 1.24363 1.75567 1.22086 0.87372 0.93711 0.95477 1.22127 0.93422 0.95740 1.05710 1.23098 1.00413 1.03255 0.94677 1.22987 1.01144 1.02829 0.94321 1.21726 1.00878 0.81071 0.97400 0.92395 0.95660 0.95859 0.77911 0.89770 0.91539 0.91132 0.90111 0.91199 0.90935 0.92887 0.92725 0.86961 0.88429 0.88660 0.88488 0.88583 0.91502 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 8 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 9 C 0.27 7.22 5.43 -5.19 -0.03 7.19 16 10 N -0.73 -15.99 5.46 -66.41 -0.36 -16.36 16 11 C 0.70 14.97 8.30 -86.91 -0.72 14.25 16 12 O -0.60 -15.32 15.78 5.29 0.08 -15.23 16 13 N -0.64 -10.28 2.97 -178.51 -0.53 -10.81 16 14 C 0.11 1.33 6.43 -3.71 -0.02 1.31 16 15 C -0.13 -1.31 6.08 -26.61 -0.16 -1.47 16 16 C -0.11 -1.13 5.54 -26.69 -0.15 -1.28 16 17 C 0.08 0.94 2.76 -26.61 -0.07 0.87 16 18 H 0.06 0.83 7.79 -51.93 -0.40 0.43 16 19 O -0.38 -4.59 9.99 -35.23 -0.35 -4.95 16 20 C 0.09 0.97 6.03 37.16 0.22 1.20 16 21 C -0.15 -1.41 6.05 -90.62 -0.55 -1.96 16 22 C -0.18 -1.52 10.18 -26.70 -0.27 -1.79 16 23 C -0.18 -1.38 10.25 -26.69 -0.27 -1.65 16 24 C 0.11 1.66 6.04 -3.71 -0.02 1.64 16 25 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.39 7.27 5.78 -40.82 -0.24 7.04 16 29 H 0.08 1.02 5.56 -51.93 -0.29 0.73 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.05 0.63 7.75 -51.93 -0.40 0.22 16 37 H 0.11 1.03 8.14 -51.92 -0.42 0.61 16 38 H 0.10 0.87 8.03 -51.93 -0.42 0.45 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.09 1.53 6.91 -51.93 -0.36 1.17 16 LS Contribution 349.71 15.07 5.27 5.27 Total: -1.00 -32.66 349.71 -9.78 -42.44 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.13 Total: 4.47 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -2.47 Total: 4.83 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.16 Total: -52.68 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.27 Total: -20.18 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.66 -9.78 -42.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426448430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.916 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds