Wall clock time and date at job start Tue Mar 31 2020 05:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00035 * 2 1 4 4 H 1.48502 * 109.47113 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47433 * 299.99725 * 3 2 1 6 6 H 1.48509 * 109.47305 * 59.99925 * 3 2 1 7 7 C 1.37881 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00154 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00219 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00143 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00144 * 179.97438 * 11 10 9 14 14 N 1.46503 * 109.47257 * 179.97438 * 13 11 10 15 15 C 1.34772 * 119.99766 * 179.97438 * 14 13 11 16 16 O 1.21273 * 120.00418 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99745 * 180.02562 * 15 14 13 18 18 C 1.53003 * 109.47328 * 180.02562 * 17 15 14 19 19 C 1.52994 * 109.47126 * 180.02562 * 18 17 15 20 20 C 1.54961 * 110.92578 * 71.54077 * 19 18 17 21 21 C 1.54270 * 104.16191 * 156.29427 * 20 19 18 22 22 C 1.53869 * 106.63967 * 336.44607 * 21 20 19 23 23 C 1.54268 * 106.60115 * 359.97438 * 22 21 20 24 24 H 0.96999 * 119.99902 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47604 * 59.99469 * 9 7 2 26 26 H 1.09000 * 109.46686 * 299.99327 * 9 7 2 27 27 H 0.97007 * 120.00128 * 359.97438 * 10 9 7 28 28 H 1.09006 * 109.46864 * 60.00560 * 13 11 10 29 29 H 1.09005 * 109.47455 * 300.00502 * 13 11 10 30 30 H 0.96999 * 119.99857 * 0.02562 * 14 13 11 31 31 H 1.09001 * 109.47076 * 60.00853 * 17 15 14 32 32 H 1.09000 * 109.47029 * 300.00405 * 17 15 14 33 33 H 1.08995 * 109.46922 * 60.00027 * 18 17 15 34 34 H 1.09000 * 109.47141 * 300.00024 * 18 17 15 35 35 H 1.09001 * 110.67554 * 308.23161 * 19 18 17 36 36 H 1.08997 * 110.47708 * 37.64024 * 20 19 18 37 37 H 1.09002 * 110.53308 * 274.97416 * 20 19 18 38 38 H 1.09002 * 110.03399 * 217.13605 * 21 20 19 39 39 H 1.08995 * 110.02943 * 95.75505 * 21 20 19 40 40 H 1.08999 * 110.03405 * 119.26051 * 22 21 20 41 41 H 1.09001 * 110.03705 * 240.64196 * 22 21 20 42 42 H 1.08997 * 110.48788 * 142.28685 * 23 22 21 43 43 H 1.09000 * 110.48806 * 264.79985 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5613 -5.1050 0.0020 13 6 2.7330 -6.0288 0.0005 14 7 2.0004 -7.2976 0.0018 15 6 2.6744 -8.4647 0.0011 16 8 3.8871 -8.4647 -0.0003 17 6 1.9209 -9.7698 0.0019 18 6 2.9151 -10.9328 0.0014 19 6 2.1501 -12.2577 0.0016 20 6 1.4759 -12.5078 -1.3711 21 6 1.3003 -14.0392 -1.4320 22 6 2.3481 -14.6411 -0.4794 23 6 3.1252 -13.4546 0.1274 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5566 0.8904 27 1 3.1567 -3.4355 0.0002 28 1 3.3602 -5.9710 0.8901 29 1 3.3591 -5.9712 -0.8900 30 1 1.0305 -7.2975 0.0025 31 1 1.2933 -9.8276 -0.8875 32 1 1.2951 -9.8275 0.8925 33 1 3.5423 -10.8749 0.8909 34 1 3.5411 -10.8753 -0.8890 35 1 1.4114 -12.2755 0.8029 36 1 2.1205 -12.1652 -2.1805 37 1 0.5070 -12.0105 -1.4174 38 1 1.4716 -14.3946 -2.4481 39 1 0.2973 -14.3132 -1.1050 40 1 1.8536 -15.2066 0.3104 41 1 3.0274 -15.2893 -1.0330 42 1 3.3594 -13.6474 1.1743 43 1 4.0377 -13.2669 -0.4384 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427650548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:12 Heat of formation + Delta-G solvation = -115.128083 kcal Electronic energy + Delta-G solvation = -21092.769912 eV Core-core repulsion = 17750.110374 eV Total energy + Delta-G solvation = -3342.659538 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.00170 -38.90713 -38.33690 -34.63518 -34.06869 -33.42191 -32.43435 -29.39828 -28.95491 -27.94272 -26.30701 -23.54494 -22.43145 -20.68378 -20.31233 -20.12504 -19.87414 -17.77852 -16.62284 -16.32687 -16.05499 -15.85366 -15.44548 -15.04827 -14.97909 -14.87418 -14.13734 -13.97735 -13.63657 -13.33174 -13.24471 -12.71232 -12.60925 -12.23260 -12.03256 -11.71531 -11.64995 -11.43539 -11.36208 -11.07203 -11.02036 -10.95341 -10.83554 -10.72533 -10.65285 -10.38311 -9.89090 -9.45801 -9.31086 -9.10121 -8.81761 -8.03276 -6.22633 -4.29879 2.63312 3.07498 3.13615 3.20640 3.28190 3.31304 4.01186 4.24752 4.31717 4.32771 4.41609 4.72891 4.82989 4.93891 5.13933 5.14274 5.20126 5.26692 5.28368 5.35283 5.36672 5.41297 5.48563 5.49858 5.55048 5.61150 5.66918 5.78476 5.86139 5.90950 6.00390 6.08779 6.20899 6.37000 7.18841 7.25467 7.41658 7.54289 7.57903 7.88905 8.21112 8.46963 8.66201 8.91265 9.36783 10.87552 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.059303 B = 0.002111 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.037460 B =13261.846201 C =13572.981335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.249 3.751 10 N -0.704 5.704 11 C 0.493 3.507 12 O -0.556 6.556 13 C 0.097 3.903 14 N -0.716 5.716 15 C 0.512 3.488 16 O -0.548 6.548 17 C -0.139 4.139 18 C -0.095 4.095 19 C -0.094 4.094 20 C -0.123 4.123 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.121 4.121 24 H 0.266 0.734 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.394 0.606 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.412 0.588 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.338 -25.222 -0.747 25.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.128 3.872 10 N -0.352 5.352 11 C 0.277 3.723 12 O -0.436 6.436 13 C -0.030 4.030 14 N -0.371 5.371 15 C 0.299 3.701 16 O -0.426 6.426 17 C -0.179 4.179 18 C -0.132 4.132 19 C -0.113 4.113 20 C -0.160 4.160 21 C -0.164 4.164 22 C -0.163 4.163 23 C -0.158 4.158 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.227 0.773 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.250 0.750 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.171 -25.199 -0.750 25.553 hybrid contribution 0.329 1.156 -0.008 1.201 sum 4.500 -24.043 -0.758 24.472 Atomic orbital electron populations 1.69978 1.06129 1.27310 1.48820 1.24958 0.94942 0.99546 0.94586 0.86334 0.79850 0.82798 0.77783 1.19577 1.20760 1.20761 1.21260 0.93396 0.90338 1.53355 0.91691 1.19174 0.88245 0.81822 0.97934 1.46424 1.11564 1.05847 1.71396 1.20366 0.89321 0.84767 0.77871 1.90646 1.16659 1.84614 1.51697 1.21127 0.94509 0.83131 1.04281 1.45796 1.11591 1.04632 1.75055 1.20749 0.88217 0.85433 0.75725 1.90690 1.14080 1.87859 1.49961 1.21690 0.99642 0.91956 1.04644 1.21331 0.96952 0.91352 1.03610 1.22202 0.97311 0.94083 0.97671 1.22491 1.00684 0.95577 0.97292 1.22132 0.99033 0.95719 0.99484 1.22130 0.97736 0.97799 0.98661 1.22405 0.98321 0.94303 1.00782 0.92432 0.95314 0.95301 0.77257 0.88854 0.88850 0.75008 0.88752 0.88806 0.91111 0.91074 0.90526 0.91427 0.91582 0.92055 0.92009 0.92052 0.92068 0.91749 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 13.29 55.43 0.74 -24.90 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.55 -14.50 9.28 -34.44 -0.32 -14.82 16 8 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 9 C 0.25 6.39 5.43 -5.19 -0.03 6.36 16 10 N -0.70 -14.17 5.55 -61.48 -0.34 -14.51 16 11 C 0.49 9.22 7.90 -10.99 -0.09 9.14 16 12 O -0.56 -12.25 15.67 5.56 0.09 -12.16 16 13 C 0.10 1.41 6.15 -5.19 -0.03 1.38 16 14 N -0.72 -9.61 5.53 -61.47 -0.34 -9.95 16 15 C 0.51 6.59 7.83 -10.99 -0.09 6.50 16 16 O -0.55 -8.81 15.98 5.56 0.09 -8.72 16 17 C -0.14 -1.25 5.59 -27.88 -0.16 -1.40 16 18 C -0.09 -0.83 4.01 -26.73 -0.11 -0.94 16 19 C -0.09 -0.68 2.86 -88.59 -0.25 -0.93 16 20 C -0.12 -0.85 5.71 -25.03 -0.14 -0.99 16 21 C -0.13 -0.81 6.80 -25.61 -0.17 -0.98 16 22 C -0.13 -0.79 6.80 -25.62 -0.17 -0.97 16 23 C -0.12 -0.84 6.27 -25.07 -0.16 -0.99 16 24 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.39 6.78 8.32 -40.82 -0.34 6.44 16 28 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.41 5.38 7.44 -40.82 -0.30 5.08 16 31 H 0.09 0.72 7.66 -51.93 -0.40 0.32 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.07 0.70 7.96 -51.93 -0.41 0.29 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.49 7.95 -51.93 -0.41 0.08 16 37 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.49 8.05 -51.93 -0.42 0.07 16 LS Contribution 356.01 15.07 5.36 5.36 Total: -1.00 -32.01 356.01 -8.55 -40.56 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.31 Total: 5.76 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -1.82 Total: 2.99 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.06 Total: -49.35 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: 0.18 Total: -20.88 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.01 -8.55 -40.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427650548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.573 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds