Wall clock time and date at job start Tue Mar 31 2020 05:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81397 * 102.99980 * 2 1 4 4 C 1.52998 * 109.47350 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.50028 * 55.07734 * 4 3 2 6 6 C 1.53117 * 109.50437 * 294.99803 * 4 3 2 7 7 C 1.53114 * 109.16134 * 182.36300 * 6 4 3 8 8 C 1.53039 * 109.27949 * 57.65713 * 7 6 4 9 9 N 1.46849 * 109.51944 * 300.81919 * 8 7 6 10 10 C 1.46903 * 110.99847 * 185.84092 * 9 8 7 11 11 C 1.53005 * 109.46925 * 163.93228 * 10 9 8 12 12 H 1.09003 * 109.46946 * 54.93906 * 11 10 9 13 13 C 1.47199 * 109.46909 * 294.93230 * 11 10 9 14 14 N 7.47958 * 136.63049 * 319.56798 * 2 1 3 15 15 C 1.53002 * 109.46481 * 174.93601 * 11 10 9 16 16 C 1.50708 * 109.46688 * 185.00197 * 15 11 10 17 17 H 1.08003 * 119.99939 * 359.97438 * 16 15 11 18 18 C 1.37871 * 120.00007 * 180.02562 * 16 15 11 19 19 N 1.31520 * 120.00257 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00334 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47163 * 59.99331 * 20 18 16 22 22 H 1.48499 * 109.47656 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46801 * 299.99833 * 20 18 16 24 24 C 1.46842 * 111.19952 * 61.74337 * 9 8 7 25 25 H 1.09006 * 109.46660 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47100 * 300.00023 * 1 2 3 27 27 H 1.08995 * 109.47083 * 60.00236 * 1 2 3 28 28 H 1.09000 * 109.47583 * 59.99435 * 3 2 1 29 29 H 1.09009 * 109.47025 * 299.99869 * 3 2 1 30 30 H 1.09001 * 109.52200 * 62.45727 * 6 4 3 31 31 H 1.08999 * 109.57622 * 302.29927 * 6 4 3 32 32 H 1.09002 * 109.50486 * 297.71283 * 7 6 4 33 33 H 1.09001 * 109.50489 * 177.59462 * 7 6 4 34 34 H 1.08998 * 109.46137 * 180.80836 * 8 7 6 35 35 H 1.08995 * 109.46004 * 60.83436 * 8 7 6 36 36 H 1.08999 * 109.47297 * 43.92966 * 10 9 8 37 37 H 1.08998 * 109.47179 * 283.93146 * 10 9 8 38 38 H 1.09000 * 109.47353 * 304.99433 * 15 11 10 39 39 H 1.08992 * 109.47334 * 65.00108 * 15 11 10 40 40 H 0.96997 * 120.00203 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.46394 * 58.26953 * 24 9 8 42 42 H 1.08995 * 109.46682 * 178.24200 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.1705 1.3965 -0.8416 6 6 4.3185 1.3917 1.3090 7 6 5.8322 1.6216 1.3269 8 6 6.1181 3.1165 1.1672 9 7 5.5476 3.5926 -0.0994 10 6 5.9213 4.9906 -0.3525 11 6 5.6659 5.3286 -1.8227 12 1 4.6292 5.1027 -2.0727 13 6 6.5615 4.5275 -2.6730 14 7 7.2512 3.9096 -3.3311 15 6 5.9349 6.8163 -2.0581 16 6 5.5664 7.1753 -3.4746 17 1 5.1795 6.4181 -4.1405 18 6 5.7241 8.4703 -3.9208 19 7 6.1958 9.3923 -3.1102 20 14 5.2681 8.9152 -5.6768 21 1 3.8279 8.6313 -5.9013 22 1 5.5290 10.3592 -5.9053 23 1 6.0844 8.1090 -6.6196 24 6 4.0889 3.4257 -0.1207 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8031 2.2372 0.8899 29 1 1.8031 2.2371 -0.8901 30 1 4.1113 0.3239 1.3791 31 1 3.8617 1.9075 2.1537 32 1 6.2933 1.0730 0.5056 33 1 6.2422 1.2719 2.2744 34 1 7.1955 3.2820 1.1652 35 1 5.6685 3.6629 1.9963 36 1 6.9781 5.1311 -0.1256 37 1 5.3236 5.6467 0.2802 38 1 5.3358 7.4078 -1.3658 39 1 6.9920 7.0248 -1.8937 40 1 6.3064 10.3034 -3.4241 41 1 3.6487 3.9706 0.7144 42 1 3.6923 3.8157 -1.0581 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429296056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:42 Heat of formation + Delta-G solvation = 1.405530 kcal Electronic energy + Delta-G solvation = -19966.161817 eV Core-core repulsion = 17071.308427 eV Total energy + Delta-G solvation = -2894.853390 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.35156 -36.53336 -34.45978 -33.40211 -32.27865 -30.98564 -29.25916 -27.09288 -26.75945 -24.51336 -22.43670 -21.64390 -21.59890 -19.75197 -16.81506 -16.54521 -16.28052 -15.78097 -14.98977 -14.80639 -14.66343 -14.43971 -14.30693 -13.75368 -13.66512 -13.48298 -13.03868 -12.98357 -12.57713 -12.46620 -12.24024 -11.97953 -11.79659 -11.35794 -11.26922 -11.19778 -11.05401 -10.84729 -10.69479 -10.62854 -10.48953 -10.45861 -10.12814 -9.99589 -9.51796 -9.22660 -8.45526 -8.18632 -7.86351 -6.09715 -4.12901 1.45416 2.38499 3.30889 3.35237 3.39127 3.75803 3.86086 3.95690 4.40935 4.55856 4.63896 4.80742 4.85943 4.87721 4.92521 5.07326 5.15909 5.26328 5.28406 5.33199 5.41323 5.42434 5.54580 5.58728 5.60237 5.73686 5.79750 5.88150 5.97892 6.02255 6.06962 6.17720 6.34326 6.38721 6.51547 7.19273 7.20759 7.42180 7.53170 7.85455 8.23274 8.62420 8.91730 9.52572 11.01160 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.018542 B = 0.003754 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.727499 B = 7456.931035 C = 8288.599106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.262 6.262 3 C -0.078 4.078 4 C -0.069 4.069 5 H 0.088 0.912 6 C -0.114 4.114 7 C -0.116 4.116 8 C 0.056 3.944 9 N -0.540 5.540 10 C 0.063 3.937 11 C 0.012 3.988 12 H 0.098 0.902 13 C 0.257 3.743 14 N -0.480 5.480 15 C 0.032 3.968 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.063 3.937 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.276 1.276 24 C 0.062 3.938 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.037 0.963 39 H 0.026 0.974 40 H 0.263 0.737 41 H 0.036 0.964 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.542 -14.460 12.593 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.036 6.036 3 C -0.227 4.227 4 C -0.089 4.089 5 H 0.107 0.893 6 C -0.152 4.152 7 C -0.154 4.154 8 C -0.072 4.072 9 N -0.265 5.265 10 C -0.065 4.065 11 C -0.010 4.010 12 H 0.116 0.884 13 C -0.060 4.060 14 N -0.157 5.157 15 C -0.007 4.007 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.067 4.067 25 H 0.117 0.883 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.601 -16.368 11.241 21.261 hybrid contribution -1.762 2.183 -0.140 2.809 sum -9.363 -14.185 11.101 20.300 Atomic orbital electron populations 1.23384 0.94770 1.06304 1.04858 1.86905 1.06720 1.11938 1.98022 1.23469 1.00295 0.93852 1.05067 1.20955 0.91130 0.96946 0.99820 0.89337 1.21670 0.95616 1.01413 0.96515 1.21577 0.95990 0.96002 1.01833 1.22083 0.99841 0.95362 0.89898 1.61874 1.10083 1.21020 1.33475 1.22227 1.01728 0.86935 0.95638 1.19225 0.95989 0.96659 0.89162 0.88389 1.28832 0.93193 0.91388 0.92578 1.80982 1.11232 1.12543 1.10955 1.19168 0.98365 0.85303 0.97867 1.21107 1.43804 0.94692 0.96840 0.92563 1.24945 0.94942 0.96487 0.97544 1.69928 1.45176 1.02442 1.35545 0.86661 0.79097 0.77340 0.85029 1.20077 1.21192 1.20181 1.22134 0.88281 0.94649 1.01677 0.88292 0.90646 0.90510 0.90131 0.89690 0.91044 0.92261 0.91098 0.91646 0.90761 0.94927 0.90217 0.92752 0.94529 0.95581 0.92748 0.94543 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.76 101.05 1.09 0.21 16 2 S -0.26 -2.59 21.24 -107.50 -2.28 -4.87 16 3 C -0.08 -0.73 5.39 37.16 0.20 -0.53 16 4 C -0.07 -0.73 2.35 -90.54 -0.21 -0.94 16 5 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 6 C -0.11 -1.12 5.07 -26.61 -0.13 -1.26 16 7 C -0.12 -1.19 6.09 -26.65 -0.16 -1.35 16 8 C 0.06 0.63 5.44 -3.83 -0.02 0.61 16 9 N -0.54 -7.19 4.31 -234.67 -1.01 -8.20 16 10 C 0.06 0.93 4.34 -3.82 -0.02 0.92 16 11 C 0.01 0.21 2.23 -93.40 -0.21 0.01 16 12 H 0.10 1.70 6.49 -51.93 -0.34 1.36 16 13 C 0.26 5.42 13.67 -20.76 -0.28 5.13 16 14 N -0.48 -11.04 18.54 42.16 0.78 -10.26 16 15 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 16 C -0.53 -13.98 8.60 -34.44 -0.30 -14.28 16 17 H 0.06 1.49 7.59 -52.48 -0.40 1.09 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 20 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.06 0.73 4.59 -3.83 -0.02 0.71 16 25 H 0.10 0.60 8.14 -51.92 -0.42 0.17 16 26 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.07 0.72 7.23 -51.93 -0.38 0.34 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.85 7.96 -51.93 -0.41 0.43 16 35 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 1.19 7.87 -51.93 -0.41 0.78 16 37 H 0.05 0.74 8.05 -51.93 -0.42 0.32 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 41 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 1.01 6.42 -51.93 -0.33 0.68 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -29.93 352.40 -9.09 -39.02 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -7.31 Total: -3.99 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -0.29 Total: -8.53 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.51 Total: -43.20 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -2.59 SS G_CDS: -2.28 Total: -4.87 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.93 -9.09 -39.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429296056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.421 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds