Wall clock time and date at job start Tue Mar 31 2020 05:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81401 * 102.99902 * 2 1 4 4 C 1.53000 * 109.46763 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.50637 * 305.07450 * 4 3 2 6 6 C 1.53117 * 109.50241 * 65.20028 * 4 3 2 7 7 C 1.53127 * 109.15989 * 177.59130 * 6 4 3 8 8 C 1.53038 * 109.27941 * 302.34585 * 7 6 4 9 9 N 1.46830 * 109.51757 * 59.17550 * 8 7 6 10 10 C 1.46901 * 110.98168 * 174.15669 * 9 8 7 11 11 C 1.53000 * 109.47158 * 294.21498 * 10 9 8 12 12 H 1.09000 * 109.47115 * 55.00274 * 11 10 9 13 13 C 1.47205 * 109.47164 * 295.00173 * 11 10 9 14 14 N 7.81839 * 143.25009 * 35.96780 * 2 1 3 15 15 C 1.53001 * 109.46963 * 175.00160 * 11 10 9 16 16 C 1.50705 * 109.47034 * 185.00000 * 15 11 10 17 17 H 1.07999 * 119.99727 * 0.02562 * 16 15 11 18 18 C 1.37877 * 120.00127 * 180.02562 * 16 15 11 19 19 N 1.31516 * 119.99772 * 359.97438 * 18 16 15 20 20 Si 1.86790 * 120.00079 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47287 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47310 * 119.99869 * 20 18 16 23 23 H 1.48497 * 109.47251 * 239.99720 * 20 18 16 24 24 C 1.46847 * 111.21086 * 298.25173 * 9 8 7 25 25 H 1.09006 * 109.46893 * 60.00326 * 1 2 3 26 26 H 1.09000 * 109.47287 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47512 * 300.00266 * 1 2 3 28 28 H 1.09001 * 109.46945 * 60.00174 * 3 2 1 29 29 H 1.08993 * 109.47232 * 299.99931 * 3 2 1 30 30 H 1.08997 * 109.52073 * 297.49809 * 6 4 3 31 31 H 1.08998 * 109.52156 * 57.62450 * 6 4 3 32 32 H 1.08997 * 109.50037 * 62.28538 * 7 6 4 33 33 H 1.08996 * 109.50157 * 182.36309 * 7 6 4 34 34 H 1.08995 * 109.46433 * 179.19502 * 8 7 6 35 35 H 1.09004 * 109.46142 * 299.17444 * 8 7 6 36 36 H 1.09001 * 109.46985 * 54.21857 * 10 9 8 37 37 H 1.09002 * 109.46593 * 174.21847 * 10 9 8 38 38 H 1.08999 * 109.47350 * 305.00072 * 15 11 10 39 39 H 1.09001 * 109.46935 * 65.00446 * 15 11 10 40 40 H 0.96995 * 120.00196 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.46448 * 301.73578 * 24 9 8 42 42 H 1.08994 * 109.45958 * 181.75943 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.1701 1.3943 0.8418 6 6 4.3190 1.3958 -1.3093 7 6 5.8327 1.6266 -1.3262 8 6 6.1178 3.1212 -1.1620 9 7 5.5467 3.5932 0.1057 10 6 5.9197 4.9906 0.3628 11 6 7.4312 5.0831 0.5809 12 1 7.9490 4.6450 -0.2724 13 6 7.7961 4.3512 1.8049 14 7 8.0786 3.7861 2.7475 15 6 7.8368 6.5514 0.7247 16 6 9.3377 6.6513 0.8165 17 1 9.9419 5.7570 0.7760 18 6 9.9396 7.8843 0.9524 19 7 9.2038 8.9733 1.0013 20 14 11.7999 8.0081 1.0654 21 1 12.3923 6.6487 0.9857 22 1 12.3099 8.8373 -0.0559 23 1 12.1766 8.6367 2.3570 24 6 4.0880 3.4255 0.1264 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8031 2.2371 0.8900 29 1 1.8032 2.2371 -0.8899 30 1 4.1125 0.3281 -1.3824 31 1 3.8612 1.9140 -2.1518 32 1 6.2939 1.0760 -0.5064 33 1 6.2432 1.2793 -2.2743 34 1 7.1950 3.2874 -1.1593 35 1 5.6677 3.6699 -1.9894 36 1 5.6376 5.6051 -0.4922 37 1 5.4016 5.3469 1.2532 38 1 7.4878 7.1114 -0.1429 39 1 7.3892 6.9651 1.6284 40 1 9.6272 9.8408 1.0964 41 1 3.6476 3.9727 -0.7072 42 1 3.6912 3.8125 1.0649 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429296057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:45 Heat of formation + Delta-G solvation = 2.334621 kcal Electronic energy + Delta-G solvation = -19842.070250 eV Core-core repulsion = 16947.257149 eV Total energy + Delta-G solvation = -2894.813102 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.36410 -36.59377 -34.50740 -33.34370 -32.10706 -31.20751 -29.32082 -27.22166 -26.60641 -24.42466 -22.64600 -21.90171 -21.26073 -19.76335 -16.69171 -16.59525 -16.41365 -15.76385 -15.12767 -14.77368 -14.56273 -14.42642 -14.37328 -13.81747 -13.73380 -13.57951 -13.01713 -12.91985 -12.78115 -12.32461 -12.24931 -11.95395 -11.79599 -11.48474 -11.22787 -11.21910 -11.06658 -10.80093 -10.75632 -10.60880 -10.48812 -10.47158 -10.09109 -10.02133 -9.52334 -9.19810 -8.46262 -8.18407 -7.92183 -6.09975 -4.12868 1.38961 2.32396 3.28388 3.36737 3.41521 3.75604 3.86146 3.95395 4.41196 4.51259 4.61573 4.77741 4.79524 4.82032 4.93930 5.08475 5.09566 5.25862 5.28290 5.28787 5.36031 5.38775 5.55762 5.56442 5.60198 5.74066 5.78026 5.90403 5.98570 6.03300 6.07558 6.18842 6.35858 6.39015 6.52389 7.18644 7.21673 7.42500 7.52961 7.85722 8.23234 8.61764 8.92238 9.52699 11.01029 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.038714 B = 0.003010 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.073226 B = 9300.730890 C = 9377.844624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.259 6.259 3 C -0.078 4.078 4 C -0.069 4.069 5 H 0.088 0.912 6 C -0.114 4.114 7 C -0.116 4.116 8 C 0.049 3.951 9 N -0.540 5.540 10 C 0.064 3.936 11 C 0.010 3.990 12 H 0.100 0.900 13 C 0.257 3.743 14 N -0.479 5.479 15 C 0.031 3.969 16 C -0.524 4.524 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.068 3.932 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.035 0.965 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.026 0.974 40 H 0.262 0.738 41 H 0.035 0.965 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.109 -13.443 -7.251 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.033 6.033 3 C -0.227 4.227 4 C -0.089 4.089 5 H 0.107 0.893 6 C -0.152 4.152 7 C -0.154 4.154 8 C -0.079 4.079 9 N -0.264 5.264 10 C -0.065 4.065 11 C -0.012 4.012 12 H 0.118 0.882 13 C -0.060 4.060 14 N -0.156 5.156 15 C -0.008 4.008 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.210 1.210 24 C -0.062 4.062 25 H 0.094 0.906 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.825 -15.277 -5.439 22.658 hybrid contribution -0.318 2.015 -0.891 2.226 sum -16.143 -13.262 -6.330 21.830 Atomic orbital electron populations 1.23387 0.94851 1.06354 1.04781 1.86964 1.06601 1.11769 1.98006 1.23465 1.00376 0.93973 1.04852 1.20964 0.91004 0.96896 1.00013 0.89339 1.21673 0.95834 1.01382 0.96320 1.21579 0.95721 0.96138 1.01993 1.22196 1.00789 0.95224 0.89648 1.61887 1.09618 1.21132 1.33806 1.22219 0.95502 0.87250 1.01521 1.19255 0.93865 0.98635 0.89448 0.88217 1.28774 0.91601 0.91507 0.94146 1.80925 1.10302 1.12089 1.12302 1.19178 0.97036 0.85857 0.98691 1.21180 0.91470 0.92827 1.50781 0.92447 1.24955 0.98301 0.95812 0.94949 1.69946 1.35208 0.97965 1.49965 0.86538 0.85628 0.78244 0.77700 1.19654 1.20866 1.20964 1.22026 0.88447 0.94727 1.01022 0.90639 0.88240 0.90604 0.89958 0.90155 0.91060 0.92249 0.91110 0.91476 0.89873 0.94690 0.92867 0.90247 0.94501 0.95574 0.92864 0.94718 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.79 10.76 101.05 1.09 0.29 16 2 S -0.26 -2.42 21.25 -107.50 -2.28 -4.71 16 3 C -0.08 -0.67 5.38 37.16 0.20 -0.47 16 4 C -0.07 -0.70 2.35 -90.54 -0.21 -0.91 16 5 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 6 C -0.11 -1.13 5.07 -26.61 -0.13 -1.26 16 7 C -0.12 -1.25 6.09 -26.65 -0.16 -1.41 16 8 C 0.05 0.59 5.29 -3.84 -0.02 0.57 16 9 N -0.54 -7.20 4.36 -234.68 -1.02 -8.22 16 10 C 0.06 0.94 4.32 -3.82 -0.02 0.92 16 11 C 0.01 0.18 2.13 -93.40 -0.20 -0.02 16 12 H 0.10 1.73 6.22 -51.93 -0.32 1.41 16 13 C 0.26 5.41 13.67 -20.80 -0.28 5.12 16 14 N -0.48 -10.99 18.53 42.10 0.78 -10.21 16 15 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 16 C -0.52 -13.95 8.60 -34.44 -0.30 -14.25 16 17 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 20 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 24 C 0.07 0.74 4.74 -3.83 -0.02 0.72 16 25 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 26 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.72 7.24 -51.93 -0.38 0.34 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.07 6.12 -51.93 -0.32 0.75 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 37 H 0.08 1.18 7.99 -51.93 -0.41 0.77 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.81 8.01 -51.93 -0.42 0.40 16 LS Contribution 352.02 15.07 5.30 5.30 Total: -1.00 -29.99 352.02 -9.08 -39.08 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -7.30 Total: -4.29 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -0.28 Total: -8.49 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.49 Total: -43.20 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -2.28 Total: -4.71 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.99 -9.08 -39.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429296057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.410 kcal (2) G-P(sol) polarization free energy of solvation -29.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds