Wall clock time and date at job start Tue Mar 31 2020 06:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00163 * 2 1 4 4 H 1.48503 * 109.47130 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46991 * 299.99589 * 3 2 1 6 6 H 1.48497 * 109.47402 * 59.99709 * 3 2 1 7 7 C 1.37883 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99464 * 172.91608 * 7 2 1 9 9 C 1.50695 * 120.00306 * 352.91841 * 7 2 1 10 10 C 1.53001 * 115.54982 * 84.53106 * 9 7 2 11 11 N 1.46502 * 109.46770 * 39.68552 * 10 9 7 12 12 C 1.34780 * 119.99664 * 181.04822 * 11 10 9 13 13 O 1.21587 * 119.99929 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99873 * 180.02562 * 12 11 10 15 15 C 1.46501 * 119.99586 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46632 * 179.97438 * 15 14 12 17 17 H 1.09003 * 109.49634 * 60.02659 * 16 15 14 18 18 C 1.53092 * 109.48252 * 180.02562 * 16 15 14 19 19 C 1.53171 * 109.16719 * 177.58900 * 18 16 15 20 20 C 1.53174 * 109.03918 * 303.01942 * 19 18 16 21 21 C 1.53099 * 109.16086 * 56.97985 * 20 19 18 22 22 O 1.42900 * 109.41256 * 302.39296 * 21 20 19 23 23 C 1.53006 * 117.51835 * 230.23554 * 9 7 2 24 24 C 1.52996 * 117.49690 * 298.86492 * 9 7 2 25 25 H 0.96996 * 119.99963 * 5.03005 * 1 2 3 26 26 H 1.08997 * 109.47151 * 279.68282 * 10 9 7 27 27 H 1.09000 * 109.47008 * 159.67866 * 10 9 7 28 28 H 0.96996 * 119.99941 * 1.04360 * 11 10 9 29 29 H 0.96996 * 119.99731 * 359.97438 * 14 12 11 30 30 H 1.08997 * 109.47516 * 60.00088 * 15 14 12 31 31 H 1.08993 * 109.47135 * 299.99029 * 15 14 12 32 32 H 1.09000 * 109.52224 * 297.49786 * 18 16 15 33 33 H 1.09003 * 109.52013 * 57.68357 * 18 16 15 34 34 H 1.09001 * 109.54137 * 62.88793 * 19 18 16 35 35 H 1.09005 * 109.54398 * 183.15400 * 19 18 16 36 36 H 1.09005 * 109.52683 * 176.87950 * 20 19 18 37 37 H 1.08995 * 109.52520 * 297.07756 * 20 19 18 38 38 H 1.09002 * 109.47963 * 182.40983 * 21 20 19 39 39 H 1.08995 * 109.47825 * 62.37821 * 21 20 19 40 40 H 1.08993 * 117.49636 * 214.96767 * 23 9 7 41 41 H 1.08996 * 117.49663 * 359.97438 * 23 9 7 42 42 H 1.09003 * 117.50269 * 359.97319 * 24 9 7 43 43 H 1.09005 * 117.50021 * 144.97211 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0783 -1.1977 -0.1148 9 6 1.2596 -2.4941 0.1620 10 6 0.6732 -3.0827 -1.1228 11 7 1.6222 -2.8955 -2.2231 12 6 1.3081 -3.3194 -3.4633 13 8 0.2374 -3.8576 -3.6688 14 7 2.1813 -3.1477 -4.4755 15 6 1.8396 -3.6080 -5.8237 16 6 2.9938 -3.2938 -6.7776 17 1 3.8955 -3.8034 -6.4379 18 6 2.6368 -3.7741 -8.1867 19 6 3.7706 -3.4023 -9.1470 20 6 3.9983 -1.8887 -9.0892 21 6 4.3028 -1.4812 -7.6452 22 8 3.2228 -1.8834 -6.8003 23 6 1.7703 -3.4749 1.2195 24 6 0.4721 -2.7009 1.4573 25 1 -0.4850 0.8368 -0.0737 26 1 -0.2626 -2.5768 -1.3601 27 1 0.4855 -4.1471 -0.9821 28 1 2.4765 -2.4664 -2.0590 29 1 3.0356 -2.7187 -4.3114 30 1 0.9383 -3.0983 -6.1641 31 1 1.6644 -4.6837 -5.8068 32 1 2.5050 -4.8561 -8.1802 33 1 1.7128 -3.2956 -8.5114 34 1 4.6832 -3.9199 -8.8515 35 1 3.4983 -3.6915 -10.1621 36 1 4.8404 -1.6222 -9.7281 37 1 3.1019 -1.3721 -9.4321 38 1 4.4236 -0.3992 -7.5906 39 1 5.2217 -1.9666 -7.3166 40 1 1.6886 -4.5393 0.9999 41 1 2.6456 -3.1800 1.7984 42 1 0.4931 -1.8968 2.1930 43 1 -0.4639 -3.2559 1.3942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430440347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:13 Heat of formation + Delta-G solvation = -68.928810 kcal Electronic energy + Delta-G solvation = -22467.573313 eV Core-core repulsion = 19126.917126 eV Total energy + Delta-G solvation = -3340.656187 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.82433 -38.94007 -36.70254 -34.52390 -33.84632 -33.07703 -31.97468 -31.38845 -27.35407 -25.80878 -25.03165 -24.12415 -22.17581 -21.11971 -20.66194 -19.93821 -19.32615 -17.54619 -16.64305 -16.39628 -15.96697 -15.54678 -14.83510 -14.78393 -14.66256 -14.52792 -14.05801 -13.86443 -13.25456 -13.01977 -12.88458 -12.66768 -12.61080 -12.26591 -11.76160 -11.55871 -11.51355 -11.32957 -11.01451 -10.94092 -10.87068 -10.51711 -10.49609 -10.19461 -9.70474 -9.62254 -9.38282 -8.89674 -8.68221 -8.47690 -8.22167 -7.73587 -6.06080 -4.15063 3.26062 3.34751 3.35662 3.37160 3.58968 3.99385 4.36343 4.47834 4.55043 4.58515 4.72825 4.93751 4.99840 5.09092 5.19887 5.24155 5.34290 5.41365 5.45455 5.53669 5.62186 5.68431 5.76091 5.84021 5.94142 6.06827 6.11091 6.37427 6.55274 6.64214 6.77119 6.92063 6.97574 7.09034 7.14062 7.40946 7.46151 7.56314 7.77309 7.82746 8.37805 8.85012 8.90088 9.40009 9.52096 11.01727 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018549 B = 0.004042 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.122992 B = 6925.664327 C = 7972.832320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.078 3.922 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.503 4.503 8 H 0.060 0.940 9 C 0.029 3.971 10 C 0.184 3.816 11 N -0.713 5.713 12 C 0.698 3.302 13 O -0.612 6.612 14 N -0.749 5.749 15 C 0.152 3.848 16 C 0.079 3.921 17 H 0.064 0.936 18 C -0.148 4.148 19 C -0.121 4.121 20 C -0.158 4.158 21 C 0.060 3.940 22 O -0.371 6.371 23 C -0.211 4.211 24 C -0.152 4.152 25 H 0.261 0.739 26 H 0.064 0.936 27 H 0.033 0.967 28 H 0.400 0.600 29 H 0.397 0.603 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.227 -5.442 -15.658 18.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.028 3.972 10 C 0.060 3.940 11 N -0.366 5.366 12 C 0.397 3.603 13 O -0.492 6.492 14 N -0.406 5.406 15 C 0.027 3.973 16 C 0.021 3.979 17 H 0.081 0.919 18 C -0.187 4.187 19 C -0.159 4.159 20 C -0.195 4.195 21 C -0.017 4.017 22 O -0.290 6.290 23 C -0.248 4.248 24 C -0.190 4.190 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.236 0.764 29 H 0.230 0.770 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.938 -5.679 -15.634 18.430 hybrid contribution 1.319 1.274 -0.077 1.836 sum 9.257 -4.404 -15.711 18.759 Atomic orbital electron populations 1.69986 1.05936 1.26780 1.47734 1.24978 0.94738 0.98872 0.94155 0.86609 0.80189 0.83982 0.77643 1.19695 1.21033 1.20976 1.20314 0.92894 0.88617 1.52267 0.92140 1.19045 0.98191 0.93935 0.86007 1.20686 0.91562 0.96464 0.85311 1.45095 1.22360 1.62719 1.06385 1.16034 0.83580 0.79753 0.80896 1.90842 1.23867 1.50778 1.83743 1.44910 1.21186 1.66843 1.07665 1.21075 0.96382 0.99496 0.80365 1.22381 0.98057 0.82706 0.94761 0.91855 1.22133 0.99698 1.01974 0.94861 1.21572 0.98637 0.95900 0.99756 1.22209 1.02690 0.96691 0.97958 1.22573 0.89428 1.00563 0.89143 1.88046 1.52612 1.22071 1.66256 1.23080 0.98322 0.95676 1.07764 1.22495 0.92561 1.01172 1.02813 0.92908 0.91773 0.94922 0.76430 0.76975 0.91257 0.90634 0.90478 0.90542 0.91822 0.91387 0.91030 0.90958 0.88797 0.93250 0.91611 0.90470 0.89962 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.33 12.97 55.43 0.72 -23.61 16 2 C 0.08 2.06 5.39 -17.82 -0.10 1.96 16 3 Si 0.89 20.55 29.55 -169.99 -5.02 15.53 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.50 -12.91 7.43 -34.44 -0.26 -13.16 16 8 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 9 C 0.03 0.69 1.71 -155.66 -0.27 0.43 16 10 C 0.18 4.35 5.75 -4.04 -0.02 4.33 16 11 N -0.71 -15.23 5.34 -65.22 -0.35 -15.58 16 12 C 0.70 14.60 8.57 -86.92 -0.74 13.86 16 13 O -0.61 -14.94 16.34 5.29 0.09 -14.85 16 14 N -0.75 -12.17 5.45 -65.23 -0.36 -12.53 16 15 C 0.15 2.09 5.37 -4.04 -0.02 2.07 16 16 C 0.08 0.85 2.73 -26.68 -0.07 0.77 16 17 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 18 C -0.15 -1.27 5.42 -26.60 -0.14 -1.42 16 19 C -0.12 -0.88 6.03 -26.55 -0.16 -1.04 16 20 C -0.16 -1.19 6.14 -26.59 -0.16 -1.36 16 21 C 0.06 0.54 6.84 37.21 0.25 0.80 16 22 O -0.37 -4.55 10.15 -35.23 -0.36 -4.91 16 23 C -0.21 -4.50 9.88 -26.73 -0.26 -4.76 16 24 C -0.15 -3.53 9.51 -26.73 -0.25 -3.79 16 25 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 26 H 0.06 1.72 8.14 -51.93 -0.42 1.30 16 27 H 0.03 0.75 7.95 -51.93 -0.41 0.34 16 28 H 0.40 8.07 7.47 -40.82 -0.30 7.77 16 29 H 0.40 5.69 8.36 -40.82 -0.34 5.35 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 41 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 42 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 43 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 352.01 15.07 5.30 5.30 Total: -1.00 -31.02 352.01 -9.55 -40.57 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -7.37 Total: 11.39 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -2.21 Total: -1.32 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.02 Total: -51.72 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.27 Total: -19.76 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.02 -9.55 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430440347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.359 kcal (2) G-P(sol) polarization free energy of solvation -31.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds