Wall clock time and date at job start Tue Mar 31 2020 06:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00163 * 2 1 4 4 H 1.48503 * 109.47130 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46991 * 299.99589 * 3 2 1 6 6 H 1.48497 * 109.47402 * 59.99709 * 3 2 1 7 7 C 1.37883 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99464 * 172.91608 * 7 2 1 9 9 C 1.50695 * 120.00306 * 352.91841 * 7 2 1 10 10 C 1.53001 * 115.54982 * 84.53106 * 9 7 2 11 11 N 1.46502 * 109.46770 * 39.68552 * 10 9 7 12 12 C 1.34780 * 119.99664 * 181.04822 * 11 10 9 13 13 O 1.21587 * 119.99929 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99873 * 180.02562 * 12 11 10 15 15 C 1.46501 * 119.99586 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46632 * 179.97438 * 15 14 12 17 17 H 1.09003 * 109.49634 * 60.02659 * 16 15 14 18 18 C 1.53092 * 109.48252 * 180.02562 * 16 15 14 19 19 C 1.53171 * 109.16719 * 177.58900 * 18 16 15 20 20 C 1.53174 * 109.03918 * 303.01942 * 19 18 16 21 21 C 1.53099 * 109.16086 * 56.97985 * 20 19 18 22 22 O 1.42900 * 109.41256 * 302.39296 * 21 20 19 23 23 C 1.53006 * 117.51835 * 230.23554 * 9 7 2 24 24 C 1.52996 * 117.49690 * 298.86492 * 9 7 2 25 25 H 0.96996 * 119.99963 * 5.03005 * 1 2 3 26 26 H 1.08997 * 109.47151 * 279.68282 * 10 9 7 27 27 H 1.09000 * 109.47008 * 159.67866 * 10 9 7 28 28 H 0.96996 * 119.99941 * 1.04360 * 11 10 9 29 29 H 0.96996 * 119.99731 * 359.97438 * 14 12 11 30 30 H 1.08997 * 109.47516 * 60.00088 * 15 14 12 31 31 H 1.08993 * 109.47135 * 299.99029 * 15 14 12 32 32 H 1.09000 * 109.52224 * 297.49786 * 18 16 15 33 33 H 1.09003 * 109.52013 * 57.68357 * 18 16 15 34 34 H 1.09001 * 109.54137 * 62.88793 * 19 18 16 35 35 H 1.09005 * 109.54398 * 183.15400 * 19 18 16 36 36 H 1.09005 * 109.52683 * 176.87950 * 20 19 18 37 37 H 1.08995 * 109.52520 * 297.07756 * 20 19 18 38 38 H 1.09002 * 109.47963 * 182.40983 * 21 20 19 39 39 H 1.08995 * 109.47825 * 62.37821 * 21 20 19 40 40 H 1.08993 * 117.49636 * 214.96767 * 23 9 7 41 41 H 1.08996 * 117.49663 * 359.97438 * 23 9 7 42 42 H 1.09003 * 117.50269 * 359.97319 * 24 9 7 43 43 H 1.09005 * 117.50021 * 144.97211 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0783 -1.1977 -0.1148 9 6 1.2596 -2.4941 0.1620 10 6 0.6732 -3.0827 -1.1228 11 7 1.6222 -2.8955 -2.2231 12 6 1.3081 -3.3194 -3.4633 13 8 0.2374 -3.8576 -3.6688 14 7 2.1813 -3.1477 -4.4755 15 6 1.8396 -3.6080 -5.8237 16 6 2.9938 -3.2938 -6.7776 17 1 3.8955 -3.8034 -6.4379 18 6 2.6368 -3.7741 -8.1867 19 6 3.7706 -3.4023 -9.1470 20 6 3.9983 -1.8887 -9.0892 21 6 4.3028 -1.4812 -7.6452 22 8 3.2228 -1.8834 -6.8003 23 6 1.7703 -3.4749 1.2195 24 6 0.4721 -2.7009 1.4573 25 1 -0.4850 0.8368 -0.0737 26 1 -0.2626 -2.5768 -1.3601 27 1 0.4855 -4.1471 -0.9821 28 1 2.4765 -2.4664 -2.0590 29 1 3.0356 -2.7187 -4.3114 30 1 0.9383 -3.0983 -6.1641 31 1 1.6644 -4.6837 -5.8068 32 1 2.5050 -4.8561 -8.1802 33 1 1.7128 -3.2956 -8.5114 34 1 4.6832 -3.9199 -8.8515 35 1 3.4983 -3.6915 -10.1621 36 1 4.8404 -1.6222 -9.7281 37 1 3.1019 -1.3721 -9.4321 38 1 4.4236 -0.3992 -7.5906 39 1 5.2217 -1.9666 -7.3166 40 1 1.6886 -4.5393 0.9999 41 1 2.6456 -3.1800 1.7984 42 1 0.4931 -1.8968 2.1930 43 1 -0.4639 -3.2559 1.3942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430440347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:12 Heat of formation + Delta-G solvation = -89.592367 kcal Electronic energy + Delta-G solvation = -22468.469352 eV Core-core repulsion = 19126.917126 eV Total energy + Delta-G solvation = -3341.552226 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.03064 -40.20009 -38.51431 -35.83769 -34.86064 -34.55269 -33.98218 -32.36963 -28.61209 -27.57929 -26.63730 -24.93950 -23.13091 -22.90507 -21.83613 -21.28376 -21.00359 -19.12582 -18.15186 -17.49974 -17.16112 -16.79415 -16.62685 -16.25863 -15.78797 -15.66253 -15.34246 -15.12103 -14.85712 -14.38795 -14.18324 -13.99862 -13.62446 -13.46570 -13.45710 -13.07255 -12.91366 -12.81636 -12.30248 -12.21094 -11.99470 -11.96503 -11.63508 -11.50719 -11.28886 -11.17571 -10.81178 -10.45656 -10.39022 -10.27748 -9.99433 -9.47165 -8.08068 -6.21466 1.42320 1.46311 1.55319 1.89801 2.30775 2.43825 2.77175 3.19740 3.41179 3.61937 3.73846 3.94494 3.95686 4.07010 4.16542 4.27287 4.30172 4.50588 4.56430 4.62017 4.69532 4.71052 4.76177 4.80098 4.89587 4.94685 5.03065 5.08359 5.09332 5.15368 5.21537 5.29207 5.41047 5.51865 5.56835 5.64983 5.77760 5.82607 6.21451 6.30857 6.40107 6.86596 7.29970 7.48545 7.74058 8.99637 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018549 B = 0.004042 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.122992 B = 6925.664327 C = 7972.832320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.030 3.970 3 Si 0.948 3.052 4 H -0.258 1.258 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.503 4.503 8 H 0.066 0.934 9 C 0.004 3.996 10 C 0.198 3.802 11 N -0.711 5.711 12 C 0.694 3.306 13 O -0.650 6.650 14 N -0.732 5.732 15 C 0.148 3.852 16 C 0.086 3.914 17 H 0.080 0.920 18 C -0.147 4.147 19 C -0.118 4.118 20 C -0.155 4.155 21 C 0.053 3.947 22 O -0.402 6.402 23 C -0.179 4.179 24 C -0.162 4.162 25 H 0.257 0.743 26 H 0.022 0.978 27 H 0.038 0.962 28 H 0.407 0.593 29 H 0.408 0.592 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.739 -6.028 -16.667 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.172 4.172 3 Si 0.775 3.225 4 H -0.182 1.182 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.541 4.541 8 H 0.084 0.916 9 C 0.004 3.996 10 C 0.073 3.927 11 N -0.364 5.364 12 C 0.393 3.607 13 O -0.533 6.533 14 N -0.388 5.388 15 C 0.024 3.976 16 C 0.029 3.971 17 H 0.098 0.902 18 C -0.185 4.185 19 C -0.156 4.156 20 C -0.193 4.193 21 C -0.023 4.023 22 O -0.321 6.321 23 C -0.216 4.216 24 C -0.200 4.200 25 H 0.066 0.934 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.243 0.757 29 H 0.244 0.756 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.081 0.919 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.516 -6.260 -16.667 20.678 hybrid contribution 0.542 1.435 0.211 1.549 sum 11.058 -4.825 -16.456 20.405 Atomic orbital electron populations 1.70121 1.07421 1.27151 1.49527 1.25681 0.95312 1.01975 0.94204 0.85659 0.79706 0.80196 0.76970 1.18188 1.21589 1.21307 1.20605 0.93211 0.89305 1.50932 0.91552 1.19112 0.99410 0.94682 0.86433 1.20364 0.90339 0.96071 0.85938 1.44947 1.22164 1.62998 1.06314 1.16222 0.83641 0.79438 0.81383 1.90811 1.25712 1.52490 1.84333 1.44826 1.20683 1.65744 1.07562 1.21275 0.97216 0.99636 0.79504 1.22335 0.97198 0.82535 0.95071 0.90176 1.22133 0.99891 1.02699 0.93782 1.21585 0.98421 0.95606 0.99964 1.22194 1.02963 0.96945 0.97208 1.22770 0.89027 1.00906 0.89635 1.87994 1.53988 1.22805 1.67360 1.23080 0.97195 0.96302 1.05012 1.22433 0.94005 1.01479 1.02092 0.93360 0.95992 0.94347 0.75664 0.75623 0.93386 0.89867 0.89063 0.91699 0.90655 0.90150 0.89111 0.92073 0.88639 0.91906 0.89294 0.89563 0.91800 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.67 12.97 21.45 0.28 -51.39 16 2 C 0.03 1.56 5.39 84.66 0.46 2.02 16 3 Si 0.95 42.10 29.55 68.60 2.03 44.12 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.50 -25.44 7.43 25.60 0.19 -25.25 16 8 H 0.07 3.22 7.82 -2.91 -0.02 3.19 16 9 C 0.00 0.21 1.71 -52.93 -0.09 0.12 16 10 C 0.20 9.46 5.75 86.38 0.50 9.96 16 11 N -0.71 -30.30 5.34 -478.53 -2.55 -32.85 16 12 C 0.69 29.09 8.57 179.05 1.53 30.63 16 13 O -0.65 -32.29 16.34 -3.99 -0.07 -32.36 16 14 N -0.73 -23.30 5.45 -478.54 -2.61 -25.91 16 15 C 0.15 3.99 5.37 86.38 0.46 4.45 16 16 C 0.09 1.71 2.73 30.62 0.08 1.79 16 17 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 18 C -0.15 -2.25 5.42 30.68 0.17 -2.08 16 19 C -0.12 -1.39 6.03 30.71 0.19 -1.20 16 20 C -0.16 -2.01 6.14 30.69 0.19 -1.82 16 21 C 0.05 0.86 6.84 72.02 0.49 1.35 16 22 O -0.40 -9.36 10.15 -148.98 -1.51 -10.88 16 23 C -0.18 -7.25 9.88 30.60 0.30 -6.95 16 24 C -0.16 -7.48 9.51 30.59 0.29 -7.19 16 25 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 26 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.04 1.76 7.95 -2.39 -0.02 1.74 16 28 H 0.41 16.08 7.47 -92.71 -0.69 15.39 16 29 H 0.41 11.18 8.36 -92.71 -0.78 10.40 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.09 3.21 8.08 -2.39 -0.02 3.19 16 41 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 42 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 43 H 0.07 3.11 8.14 -2.38 -0.02 3.10 16 Total: -1.00 -66.98 352.01 -0.15 -67.12 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: -0.47 Total: 36.31 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 4.76 Total: 5.82 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -4.88 Total: -110.15 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -1.58 Total: -43.23 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -66.98 -0.15 -67.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430440347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.467 kcal (2) G-P(sol) polarization free energy of solvation -66.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds