Wall clock time and date at job start Tue Mar 31 2020 06:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99892 * 2 1 4 4 H 1.48500 * 109.46917 * 269.99782 * 3 2 1 5 5 H 1.48497 * 109.47270 * 29.99760 * 3 2 1 6 6 H 1.48502 * 109.47311 * 149.99624 * 3 2 1 7 7 C 1.37875 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99977 * 173.56200 * 7 2 1 9 9 C 1.50703 * 119.99953 * 353.55591 * 7 2 1 10 10 C 1.52996 * 115.55154 * 85.40822 * 9 7 2 11 11 N 1.46499 * 109.47288 * 65.13847 * 10 9 7 12 12 C 1.34773 * 119.99608 * 178.29045 * 11 10 9 13 13 O 1.21581 * 120.00669 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99322 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99649 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47087 * 179.97438 * 15 14 12 17 17 H 1.09001 * 109.48873 * 305.02188 * 16 15 14 18 18 C 1.53092 * 109.48133 * 184.99681 * 16 15 14 19 19 C 1.53178 * 109.21378 * 182.43956 * 18 16 15 20 20 C 1.53175 * 109.03707 * 56.95006 * 19 18 16 21 21 C 1.53092 * 109.16306 * 303.01796 * 20 19 18 22 22 O 1.42903 * 109.41678 * 57.61043 * 21 20 19 23 23 C 1.52998 * 117.49698 * 231.07725 * 9 7 2 24 24 C 1.53004 * 117.49509 * 299.73455 * 9 7 2 25 25 H 0.97001 * 120.00006 * 5.07078 * 1 2 3 26 26 H 1.09005 * 109.46369 * 305.13978 * 10 9 7 27 27 H 1.08997 * 109.47102 * 185.14547 * 10 9 7 28 28 H 0.96996 * 119.99634 * 358.29351 * 11 10 9 29 29 H 0.96998 * 120.00485 * 359.97438 * 14 12 11 30 30 H 1.08994 * 109.47706 * 59.99651 * 15 14 12 31 31 H 1.09007 * 109.47090 * 299.99139 * 15 14 12 32 32 H 1.08997 * 109.52172 * 62.49914 * 18 16 15 33 33 H 1.09003 * 109.51926 * 302.37433 * 18 16 15 34 34 H 1.09008 * 109.54156 * 176.81187 * 19 18 16 35 35 H 1.08996 * 109.54138 * 297.07901 * 19 18 16 36 36 H 1.09003 * 109.52597 * 62.92368 * 20 19 18 37 37 H 1.09000 * 109.52483 * 183.05023 * 20 19 18 38 38 H 1.09002 * 109.48131 * 177.59364 * 21 20 19 39 39 H 1.09001 * 109.47884 * 297.62561 * 21 20 19 40 40 H 1.09007 * 117.50072 * 215.00055 * 23 9 7 41 41 H 1.09001 * 117.50642 * 0.02562 * 23 9 7 42 42 H 1.08992 * 117.50129 * 359.97438 * 24 9 7 43 43 H 1.08999 * 117.49649 * 144.97490 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0794 -1.1970 -0.1043 9 6 1.2582 -2.4950 0.1476 10 6 0.7022 -3.0870 -1.1490 11 7 1.8113 -3.4601 -2.0305 12 6 1.5600 -4.0373 -3.2222 13 8 0.4130 -4.2480 -3.5659 14 7 2.5805 -4.3809 -4.0328 15 6 2.3074 -5.0078 -5.3285 16 6 3.6286 -5.2938 -6.0452 17 1 4.2079 -4.3735 -6.1209 18 6 3.3416 -5.8333 -7.4489 19 6 4.6662 -6.1748 -8.1382 20 6 5.4342 -7.1803 -7.2748 21 6 5.6417 -6.5881 -5.8784 22 8 4.3729 -6.2646 -5.3062 23 6 1.7470 -3.4727 1.2180 24 6 0.4417 -2.7004 1.4252 25 1 -0.4850 0.8368 -0.0742 26 1 0.0755 -2.3470 -1.6468 27 1 0.1076 -3.9711 -0.9191 28 1 2.7263 -3.2917 -1.7563 29 1 3.4956 -4.2125 -3.7588 30 1 1.7024 -4.3358 -5.9371 31 1 1.7681 -5.9423 -5.1735 32 1 2.8135 -5.0766 -8.0290 33 1 2.7272 -6.7307 -7.3755 34 1 4.4660 -6.6123 -9.1164 35 1 5.2596 -5.2683 -8.2573 36 1 4.8625 -8.1051 -7.1970 37 1 6.4021 -7.3877 -7.7310 38 1 6.1503 -7.3164 -5.2466 39 1 6.2478 -5.6853 -5.9528 40 1 1.6726 -4.5379 0.9986 41 1 2.6082 -3.1750 1.8162 42 1 0.4448 -1.8950 2.1594 43 1 -0.4917 -3.2571 1.3419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430440348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:15 Heat of formation + Delta-G solvation = -69.168152 kcal Electronic energy + Delta-G solvation = -22279.707137 eV Core-core repulsion = 18939.040572 eV Total energy + Delta-G solvation = -3340.666566 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.88232 -39.02747 -36.72575 -34.59661 -33.89617 -33.16701 -31.94494 -31.44100 -27.40180 -25.88919 -24.99107 -24.17388 -22.24376 -21.15952 -20.72459 -19.99747 -19.31418 -17.69644 -16.67429 -16.44246 -16.01073 -15.60129 -14.90396 -14.80291 -14.71106 -14.56385 -14.09578 -13.89751 -13.28532 -13.11650 -13.01394 -12.79195 -12.56239 -12.30062 -11.67659 -11.56242 -11.53086 -11.36777 -10.98944 -10.98059 -10.89642 -10.56356 -10.50318 -10.22643 -9.76751 -9.64575 -9.45081 -8.92398 -8.75051 -8.46050 -8.20526 -7.89075 -6.04463 -4.12837 3.26995 3.27777 3.35040 3.36878 3.50352 3.90106 4.37407 4.43056 4.50561 4.54468 4.67001 4.89317 4.94503 4.99158 5.15670 5.23741 5.29603 5.41280 5.42010 5.49395 5.58345 5.64311 5.72207 5.78922 5.88957 6.01659 6.08781 6.39661 6.52535 6.66022 6.74693 6.84269 6.91637 7.01427 7.13398 7.40704 7.47653 7.52515 7.68125 7.84518 8.38278 8.75164 8.87869 9.29481 9.53511 11.03387 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022152 B = 0.003397 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.672976 B = 8239.472822 C = 8596.072099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.028 3.972 10 C 0.182 3.818 11 N -0.720 5.720 12 C 0.698 3.302 13 O -0.606 6.606 14 N -0.750 5.750 15 C 0.151 3.849 16 C 0.079 3.921 17 H 0.065 0.935 18 C -0.148 4.148 19 C -0.122 4.122 20 C -0.158 4.158 21 C 0.060 3.940 22 O -0.373 6.373 23 C -0.211 4.211 24 C -0.148 4.148 25 H 0.261 0.739 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.396 0.604 29 H 0.396 0.604 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.960 -11.344 -13.521 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.027 3.973 10 C 0.059 3.941 11 N -0.373 5.373 12 C 0.398 3.602 13 O -0.486 6.486 14 N -0.407 5.407 15 C 0.026 3.974 16 C 0.021 3.979 17 H 0.083 0.917 18 C -0.187 4.187 19 C -0.159 4.159 20 C -0.195 4.195 21 C -0.017 4.017 22 O -0.292 6.292 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.229 0.771 29 H 0.229 0.771 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.618 -11.474 -13.570 20.206 hybrid contribution 1.394 1.219 -0.071 1.854 sum 11.013 -10.255 -13.641 20.310 Atomic orbital electron populations 1.69977 1.05875 1.26865 1.48283 1.24983 0.94794 0.98902 0.94367 0.86637 0.79921 0.83622 0.78089 1.20727 1.21188 1.19855 1.20333 0.92784 0.88656 1.51939 0.92271 1.19039 0.98566 0.93869 0.85782 1.20832 0.86658 0.96604 0.90021 1.45121 1.11261 1.63691 1.17181 1.16021 0.84518 0.78824 0.80817 1.90861 1.19931 1.62137 1.75690 1.44958 1.08602 1.67618 1.19503 1.21083 0.94216 0.98268 0.83794 1.22384 0.92925 0.91458 0.91128 0.91742 1.22127 0.98205 1.02586 0.95737 1.21577 0.96176 0.99331 0.98831 1.22203 1.01099 0.99665 0.96557 1.22567 0.85520 0.99516 0.94075 1.88015 1.30592 1.60782 1.49831 1.23019 0.98597 0.95730 1.07445 1.22488 0.92308 1.01069 1.02734 0.92878 0.91268 0.94771 0.77110 0.77083 0.90466 0.91167 0.90405 0.90567 0.91346 0.91769 0.90995 0.91011 0.88848 0.93214 0.91618 0.90430 0.89854 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.53 12.91 55.43 0.72 -23.81 16 2 C 0.07 1.97 5.39 -17.82 -0.10 1.88 16 3 Si 0.89 20.68 29.55 -169.99 -5.02 15.66 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.50 -12.99 8.63 -34.44 -0.30 -13.29 16 8 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 9 C 0.03 0.68 1.38 -155.66 -0.21 0.46 16 10 C 0.18 4.30 5.50 -4.04 -0.02 4.28 16 11 N -0.72 -14.71 5.48 -65.23 -0.36 -15.07 16 12 C 0.70 14.07 8.56 -86.92 -0.74 13.33 16 13 O -0.61 -14.53 16.34 5.29 0.09 -14.44 16 14 N -0.75 -11.50 5.51 -65.22 -0.36 -11.86 16 15 C 0.15 1.99 5.34 -4.04 -0.02 1.97 16 16 C 0.08 0.80 2.68 -26.68 -0.07 0.73 16 17 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 18 C -0.15 -1.21 5.42 -26.59 -0.14 -1.36 16 19 C -0.12 -0.83 6.03 -26.55 -0.16 -0.99 16 20 C -0.16 -1.08 6.14 -26.59 -0.16 -1.24 16 21 C 0.06 0.48 6.84 37.21 0.25 0.74 16 22 O -0.37 -4.14 10.35 -35.23 -0.36 -4.51 16 23 C -0.21 -4.47 9.96 -26.69 -0.27 -4.74 16 24 C -0.15 -3.44 9.42 -26.69 -0.25 -3.69 16 25 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 26 H 0.07 1.87 8.14 -51.93 -0.42 1.45 16 27 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 28 H 0.40 7.35 8.38 -40.82 -0.34 7.01 16 29 H 0.40 5.21 8.49 -40.82 -0.35 4.86 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 43 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 354.12 15.07 5.34 5.34 Total: -1.00 -31.11 354.12 -9.58 -40.69 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -7.42 Total: 9.92 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -2.20 Total: -1.92 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.00 Total: -50.73 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.28 Total: -18.95 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.11 -9.58 -40.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430440348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.481 kcal (2) G-P(sol) polarization free energy of solvation -31.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds