Wall clock time and date at job start Tue Mar 31 2020 06:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99892 * 2 1 4 4 H 1.48500 * 109.46917 * 269.99782 * 3 2 1 5 5 H 1.48497 * 109.47270 * 29.99760 * 3 2 1 6 6 H 1.48502 * 109.47311 * 149.99624 * 3 2 1 7 7 C 1.37875 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99977 * 173.56200 * 7 2 1 9 9 C 1.50703 * 119.99953 * 353.55591 * 7 2 1 10 10 C 1.52996 * 115.55154 * 85.40822 * 9 7 2 11 11 N 1.46499 * 109.47288 * 65.13847 * 10 9 7 12 12 C 1.34773 * 119.99608 * 178.29045 * 11 10 9 13 13 O 1.21581 * 120.00669 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99322 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99649 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47087 * 179.97438 * 15 14 12 17 17 H 1.09001 * 109.48873 * 305.02188 * 16 15 14 18 18 C 1.53092 * 109.48133 * 184.99681 * 16 15 14 19 19 C 1.53178 * 109.21378 * 182.43956 * 18 16 15 20 20 C 1.53175 * 109.03707 * 56.95006 * 19 18 16 21 21 C 1.53092 * 109.16306 * 303.01796 * 20 19 18 22 22 O 1.42903 * 109.41678 * 57.61043 * 21 20 19 23 23 C 1.52998 * 117.49698 * 231.07725 * 9 7 2 24 24 C 1.53004 * 117.49509 * 299.73455 * 9 7 2 25 25 H 0.97001 * 120.00006 * 5.07078 * 1 2 3 26 26 H 1.09005 * 109.46369 * 305.13978 * 10 9 7 27 27 H 1.08997 * 109.47102 * 185.14547 * 10 9 7 28 28 H 0.96996 * 119.99634 * 358.29351 * 11 10 9 29 29 H 0.96998 * 120.00485 * 359.97438 * 14 12 11 30 30 H 1.08994 * 109.47706 * 59.99651 * 15 14 12 31 31 H 1.09007 * 109.47090 * 299.99139 * 15 14 12 32 32 H 1.08997 * 109.52172 * 62.49914 * 18 16 15 33 33 H 1.09003 * 109.51926 * 302.37433 * 18 16 15 34 34 H 1.09008 * 109.54156 * 176.81187 * 19 18 16 35 35 H 1.08996 * 109.54138 * 297.07901 * 19 18 16 36 36 H 1.09003 * 109.52597 * 62.92368 * 20 19 18 37 37 H 1.09000 * 109.52483 * 183.05023 * 20 19 18 38 38 H 1.09002 * 109.48131 * 177.59364 * 21 20 19 39 39 H 1.09001 * 109.47884 * 297.62561 * 21 20 19 40 40 H 1.09007 * 117.50072 * 215.00055 * 23 9 7 41 41 H 1.09001 * 117.50642 * 0.02562 * 23 9 7 42 42 H 1.08992 * 117.50129 * 359.97438 * 24 9 7 43 43 H 1.08999 * 117.49649 * 144.97490 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0794 -1.1970 -0.1043 9 6 1.2582 -2.4950 0.1476 10 6 0.7022 -3.0870 -1.1490 11 7 1.8113 -3.4601 -2.0305 12 6 1.5600 -4.0373 -3.2222 13 8 0.4130 -4.2480 -3.5659 14 7 2.5805 -4.3809 -4.0328 15 6 2.3074 -5.0078 -5.3285 16 6 3.6286 -5.2938 -6.0452 17 1 4.2079 -4.3735 -6.1209 18 6 3.3416 -5.8333 -7.4489 19 6 4.6662 -6.1748 -8.1382 20 6 5.4342 -7.1803 -7.2748 21 6 5.6417 -6.5881 -5.8784 22 8 4.3729 -6.2646 -5.3062 23 6 1.7470 -3.4727 1.2180 24 6 0.4417 -2.7004 1.4252 25 1 -0.4850 0.8368 -0.0742 26 1 0.0755 -2.3470 -1.6468 27 1 0.1076 -3.9711 -0.9191 28 1 2.7263 -3.2917 -1.7563 29 1 3.4956 -4.2125 -3.7588 30 1 1.7024 -4.3358 -5.9371 31 1 1.7681 -5.9423 -5.1735 32 1 2.8135 -5.0766 -8.0290 33 1 2.7272 -6.7307 -7.3755 34 1 4.4660 -6.6123 -9.1164 35 1 5.2596 -5.2683 -8.2573 36 1 4.8625 -8.1051 -7.1970 37 1 6.4021 -7.3877 -7.7310 38 1 6.1503 -7.3164 -5.2466 39 1 6.2478 -5.6853 -5.9528 40 1 1.6726 -4.5379 0.9986 41 1 2.6082 -3.1750 1.8162 42 1 0.4448 -1.8950 2.1594 43 1 -0.4917 -3.2571 1.3419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430440348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:15 Heat of formation + Delta-G solvation = -90.082874 kcal Electronic energy + Delta-G solvation = -22280.614068 eV Core-core repulsion = 18939.040572 eV Total energy + Delta-G solvation = -3341.573496 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.06284 -40.20818 -38.53269 -35.86658 -34.91912 -34.54642 -33.94955 -32.37388 -28.64209 -27.61400 -26.60015 -24.94628 -23.16897 -22.92385 -21.87895 -21.25391 -21.01132 -19.23976 -18.13316 -17.49709 -17.17560 -16.79304 -16.65773 -16.27795 -15.79465 -15.64108 -15.39178 -15.12031 -14.96252 -14.41471 -14.15656 -13.98179 -13.59471 -13.48998 -13.37354 -13.08932 -12.89708 -12.82120 -12.32865 -12.20823 -12.02650 -11.96953 -11.63789 -11.51407 -11.31595 -11.19430 -10.83300 -10.44794 -10.39018 -10.28114 -10.02713 -9.56457 -8.07499 -6.20784 1.43423 1.46012 1.54609 1.84674 2.25794 2.44248 2.75975 3.20421 3.34105 3.63104 3.72782 3.94346 3.95746 4.07575 4.16448 4.26042 4.28546 4.51321 4.57762 4.61802 4.67961 4.69612 4.76462 4.79315 4.88959 4.94654 5.01121 5.05376 5.08512 5.15927 5.21660 5.28838 5.40937 5.53792 5.60723 5.63278 5.73526 5.80724 6.16413 6.29729 6.39135 6.85984 7.25008 7.48415 7.69835 9.00131 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022152 B = 0.003397 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.672976 B = 8239.472822 C = 8596.072099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.951 3.049 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.263 1.263 7 C -0.504 4.504 8 H 0.064 0.936 9 C 0.006 3.994 10 C 0.200 3.800 11 N -0.715 5.715 12 C 0.695 3.305 13 O -0.648 6.648 14 N -0.731 5.731 15 C 0.148 3.852 16 C 0.088 3.912 17 H 0.076 0.924 18 C -0.147 4.147 19 C -0.120 4.120 20 C -0.155 4.155 21 C 0.053 3.947 22 O -0.398 6.398 23 C -0.177 4.177 24 C -0.158 4.158 25 H 0.259 0.741 26 H 0.026 0.974 27 H 0.031 0.969 28 H 0.406 0.594 29 H 0.409 0.591 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.455 -11.821 -14.354 22.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.177 4.177 3 Si 0.778 3.222 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.187 1.187 7 C -0.542 4.542 8 H 0.082 0.918 9 C 0.006 3.994 10 C 0.075 3.925 11 N -0.368 5.368 12 C 0.395 3.605 13 O -0.531 6.531 14 N -0.387 5.387 15 C 0.024 3.976 16 C 0.030 3.970 17 H 0.094 0.906 18 C -0.185 4.185 19 C -0.157 4.157 20 C -0.193 4.193 21 C -0.023 4.023 22 O -0.317 6.317 23 C -0.214 4.214 24 C -0.197 4.197 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.241 0.759 29 H 0.245 0.755 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.191 -11.969 -14.418 22.355 hybrid contribution 0.640 1.300 0.167 1.459 sum 12.831 -10.668 -14.251 21.943 Atomic orbital electron populations 1.70109 1.07316 1.27319 1.49809 1.25721 0.95461 1.02125 0.94379 0.85660 0.78932 0.79711 0.77945 1.20594 1.21592 1.18740 1.20653 0.93122 0.89546 1.50887 0.91792 1.19053 0.99707 0.94483 0.86207 1.20396 0.87013 0.95100 0.90020 1.44903 1.10984 1.63780 1.17165 1.16200 0.84769 0.78606 0.80946 1.90831 1.21989 1.63753 1.76513 1.44840 1.08184 1.66254 1.19426 1.21250 0.96312 0.97298 0.82781 1.22284 0.91293 0.92052 0.91407 0.90632 1.22127 0.99230 1.02464 0.94718 1.21592 0.95270 0.99759 0.99101 1.22189 1.01959 0.99187 0.95928 1.22774 0.84360 1.00284 0.94876 1.87970 1.31952 1.61021 1.50797 1.23003 0.97404 0.96219 1.04746 1.22435 0.93743 1.01390 1.02101 0.93239 0.95551 0.95115 0.75860 0.75498 0.90553 0.92614 0.89528 0.91297 0.90216 0.90990 0.91757 0.89190 0.88131 0.92222 0.89495 0.89466 0.91666 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.90 12.91 21.45 0.28 -51.63 16 2 C 0.02 1.27 5.39 84.66 0.46 1.73 16 3 Si 0.95 42.33 29.55 68.60 2.03 44.36 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.50 -25.96 8.63 25.60 0.22 -25.74 16 8 H 0.06 3.16 7.82 -2.91 -0.02 3.14 16 9 C 0.01 0.30 1.38 -52.93 -0.07 0.23 16 10 C 0.20 9.54 5.50 86.38 0.48 10.02 16 11 N -0.72 -28.99 5.48 -478.55 -2.62 -31.61 16 12 C 0.70 27.98 8.56 179.05 1.53 29.51 16 13 O -0.65 -31.64 16.34 -3.97 -0.06 -31.71 16 14 N -0.73 -21.78 5.51 -478.53 -2.64 -24.41 16 15 C 0.15 3.80 5.34 86.38 0.46 4.26 16 16 C 0.09 1.63 2.68 30.63 0.08 1.71 16 17 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 18 C -0.15 -2.15 5.42 30.68 0.17 -1.99 16 19 C -0.12 -1.33 6.03 30.71 0.19 -1.14 16 20 C -0.16 -1.74 6.14 30.68 0.19 -1.56 16 21 C 0.05 0.74 6.84 72.01 0.49 1.23 16 22 O -0.40 -8.18 10.35 -148.98 -1.54 -9.72 16 23 C -0.18 -7.16 9.96 30.62 0.30 -6.85 16 24 C -0.16 -7.34 9.42 30.62 0.29 -7.05 16 25 H 0.26 14.26 8.32 -92.71 -0.77 13.49 16 26 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.03 1.47 8.09 -2.39 -0.02 1.45 16 28 H 0.41 14.59 8.38 -92.71 -0.78 13.82 16 29 H 0.41 10.08 8.49 -92.71 -0.79 9.30 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 3.17 8.14 -2.38 -0.02 3.15 16 41 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 42 H 0.06 3.23 8.14 -2.39 -0.02 3.21 16 43 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -67.09 354.12 -0.35 -67.44 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: -0.57 Total: 32.91 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 4.78 Total: 4.38 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -4.98 Total: -107.65 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -1.61 Total: -41.43 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -67.09 -0.35 -67.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430440348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.644 kcal (2) G-P(sol) polarization free energy of solvation -67.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds