Wall clock time and date at job start Tue Mar 31 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00298 * 2 1 4 4 H 1.48490 * 109.47407 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47071 * 300.00590 * 3 2 1 6 6 H 1.48503 * 109.46629 * 60.00084 * 3 2 1 7 7 C 1.37873 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00362 * 172.91405 * 7 2 1 9 9 C 1.50703 * 119.99801 * 352.91046 * 7 2 1 10 10 C 1.53001 * 115.54963 * 84.54197 * 9 7 2 11 11 N 1.46500 * 109.47213 * 39.67649 * 10 9 7 12 12 C 1.34779 * 119.99925 * 181.05493 * 11 10 9 13 13 O 1.21590 * 119.99854 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99832 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99686 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.46897 * 180.02562 * 15 14 12 17 17 H 1.08994 * 109.57002 * 55.16096 * 16 15 14 18 18 C 1.53179 * 109.52204 * 175.31491 * 16 15 14 19 19 C 1.53200 * 109.04239 * 176.88477 * 18 16 15 20 20 C 1.53089 * 109.15244 * 303.02914 * 19 18 16 21 21 O 1.42912 * 109.42345 * 57.60125 * 20 19 18 22 22 C 1.42899 * 114.09527 * 298.83573 * 21 20 19 23 23 C 1.52998 * 117.51849 * 230.23517 * 9 7 2 24 24 C 1.52995 * 117.50220 * 298.86509 * 9 7 2 25 25 H 0.96998 * 120.00230 * 5.02470 * 1 2 3 26 26 H 1.09005 * 109.46700 * 279.68076 * 10 9 7 27 27 H 1.08993 * 109.47315 * 159.67956 * 10 9 7 28 28 H 0.96999 * 120.00014 * 1.04729 * 11 10 9 29 29 H 0.96995 * 120.00413 * 359.97438 * 14 12 11 30 30 H 1.08995 * 109.47065 * 60.00210 * 15 14 12 31 31 H 1.08999 * 109.47206 * 300.00076 * 15 14 12 32 32 H 1.08996 * 109.54414 * 296.75676 * 18 16 15 33 33 H 1.09002 * 109.53905 * 56.93244 * 18 16 15 34 34 H 1.08996 * 109.53736 * 183.12033 * 19 18 16 35 35 H 1.09001 * 109.51622 * 62.92549 * 19 18 16 36 36 H 1.09000 * 109.48060 * 297.61779 * 20 19 18 37 37 H 1.08992 * 109.48094 * 177.59315 * 20 19 18 38 38 H 1.09002 * 109.47358 * 181.13815 * 22 21 20 39 39 H 1.08998 * 109.48469 * 301.17284 * 22 21 20 40 40 H 1.09005 * 117.50070 * 214.97407 * 23 9 7 41 41 H 1.09003 * 117.50406 * 359.97438 * 23 9 7 42 42 H 1.09003 * 117.49591 * 359.97438 * 24 9 7 43 43 H 1.08998 * 117.50111 * 144.99709 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0784 -1.1976 -0.1159 9 6 1.2596 -2.4942 0.1600 10 6 0.6733 -3.0818 -1.1253 11 7 1.6222 -2.8937 -2.2255 12 6 1.3080 -3.3166 -3.4661 13 8 0.2373 -3.8546 -3.6720 14 7 2.1808 -3.1430 -4.4783 15 6 1.8395 -3.6032 -5.8267 16 6 2.9935 -3.2879 -6.7805 17 1 3.9149 -3.7250 -6.3958 18 6 2.6886 -3.8717 -8.1635 19 6 3.8130 -3.4834 -9.1289 20 6 3.9458 -1.9586 -9.1580 21 8 4.1981 -1.4782 -7.8359 22 6 3.1580 -1.7707 -6.9006 23 6 1.7705 -3.4758 1.2166 24 6 0.4723 -2.7021 1.4552 25 1 -0.4850 0.8368 -0.0736 26 1 -0.2626 -2.5757 -1.3622 27 1 0.4855 -4.1463 -0.9855 28 1 2.4765 -2.4647 -2.0612 29 1 3.0348 -2.7135 -4.3142 30 1 0.9374 -3.0947 -6.1667 31 1 1.6657 -4.6792 -5.8103 32 1 2.6255 -4.9576 -8.0951 33 1 1.7410 -3.4735 -8.5264 34 1 3.5770 -3.8476 -10.1287 35 1 4.7510 -3.9244 -8.7916 36 1 3.0213 -1.5203 -9.5337 37 1 4.7725 -1.6781 -9.8106 38 1 3.4175 -1.3550 -5.9269 39 1 2.2232 -1.3299 -7.2468 40 1 1.6888 -4.5402 0.9961 41 1 2.6458 -3.1815 1.7956 42 1 0.4934 -1.8986 2.1915 43 1 -0.4635 -3.2574 1.3917 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430449455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:55 Heat of formation + Delta-G solvation = -70.039169 kcal Electronic energy + Delta-G solvation = -22451.453992 eV Core-core repulsion = 19110.749656 eV Total energy + Delta-G solvation = -3340.704336 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.89242 -39.02098 -36.78073 -35.34432 -33.40244 -33.08241 -32.01217 -31.18526 -26.86277 -25.64794 -25.27160 -24.77260 -22.19407 -21.14750 -20.55519 -19.99658 -19.37510 -17.60007 -16.52431 -16.41762 -16.09122 -15.54224 -15.24284 -14.79159 -14.66229 -14.47058 -14.15392 -13.83070 -13.50842 -13.05947 -12.88161 -12.79682 -12.64054 -12.16400 -11.80199 -11.59605 -11.46029 -11.24543 -11.04922 -10.96135 -10.90611 -10.53020 -10.52665 -10.22566 -9.71634 -9.67055 -9.45152 -8.93552 -8.77843 -8.51666 -8.27093 -7.80154 -6.10031 -4.19289 3.22650 3.30049 3.32625 3.34234 3.65995 3.90266 4.32591 4.47926 4.53971 4.56455 4.66657 4.92071 4.99766 5.10650 5.19781 5.21149 5.35027 5.38767 5.48377 5.50060 5.53515 5.68730 5.83011 5.84368 5.91886 6.07001 6.10934 6.33924 6.51486 6.60319 6.73977 6.84190 6.92878 6.98310 7.10629 7.35842 7.42641 7.48210 7.68567 7.78696 8.33840 8.78737 8.83761 9.31817 9.48036 10.97649 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018574 B = 0.003993 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.139807 B = 7011.304595 C = 8064.483150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.077 3.923 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.504 4.504 8 H 0.061 0.939 9 C 0.029 3.971 10 C 0.184 3.816 11 N -0.712 5.712 12 C 0.697 3.303 13 O -0.609 6.609 14 N -0.756 5.756 15 C 0.150 3.850 16 C -0.134 4.134 17 H 0.086 0.914 18 C -0.115 4.115 19 C -0.155 4.155 20 C 0.058 3.942 21 O -0.382 6.382 22 C 0.064 3.936 23 C -0.211 4.211 24 C -0.152 4.152 25 H 0.261 0.739 26 H 0.064 0.936 27 H 0.033 0.967 28 H 0.400 0.600 29 H 0.394 0.606 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.281 -5.257 -15.309 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.128 4.128 3 Si 0.715 3.285 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.028 3.972 10 C 0.060 3.940 11 N -0.365 5.365 12 C 0.397 3.603 13 O -0.489 6.489 14 N -0.414 5.414 15 C 0.025 3.975 16 C -0.153 4.153 17 H 0.104 0.896 18 C -0.153 4.153 19 C -0.192 4.192 20 C -0.019 4.019 21 O -0.300 6.300 22 C -0.013 4.013 23 C -0.248 4.248 24 C -0.190 4.190 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.236 0.764 29 H 0.227 0.773 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.265 -5.523 -15.342 17.468 hybrid contribution 0.856 1.207 0.119 1.485 sum 7.121 -4.316 -15.223 17.351 Atomic orbital electron populations 1.69991 1.05933 1.26798 1.47719 1.24981 0.94738 0.98874 0.94160 0.86615 0.80220 0.83935 0.77692 1.19656 1.21056 1.20930 1.20320 0.92909 0.88604 1.52286 0.92115 1.19044 0.98232 0.93946 0.86000 1.20695 0.91525 0.96518 0.85307 1.45120 1.22371 1.62682 1.06359 1.16045 0.83628 0.79767 0.80889 1.90852 1.23874 1.50532 1.83684 1.45104 1.21052 1.67087 1.08107 1.21015 0.96382 0.99793 0.80343 1.22053 0.99784 0.97496 0.96010 0.89570 1.21561 0.98678 1.01330 0.93734 1.22183 0.99780 0.97142 1.00124 1.22588 1.01404 0.93228 0.84707 1.87958 1.44451 1.78462 1.19166 1.22689 0.91178 0.93827 0.93599 1.23084 0.98339 0.95681 1.07727 1.22495 0.92575 1.01182 1.02769 0.92896 0.91745 0.94884 0.76413 0.77274 0.91825 0.91672 0.90988 0.91354 0.90804 0.90977 0.93204 0.89047 0.88472 0.92748 0.91603 0.90445 0.89943 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.90 12.97 55.43 0.72 -23.18 16 2 C 0.08 2.01 5.39 -17.82 -0.10 1.92 16 3 Si 0.89 20.17 29.55 -169.99 -5.02 15.15 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.50 -12.66 7.43 -34.44 -0.26 -12.92 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.08 16 9 C 0.03 0.67 1.71 -155.66 -0.27 0.41 16 10 C 0.18 4.24 5.75 -4.04 -0.02 4.22 16 11 N -0.71 -14.65 5.34 -65.22 -0.35 -14.99 16 12 C 0.70 13.91 8.57 -86.92 -0.74 13.16 16 13 O -0.61 -14.43 16.34 5.29 0.09 -14.34 16 14 N -0.76 -11.21 5.31 -65.22 -0.35 -11.56 16 15 C 0.15 1.89 5.07 -4.04 -0.02 1.87 16 16 C -0.13 -1.31 2.43 -90.48 -0.22 -1.53 16 17 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 18 C -0.11 -0.94 5.31 -26.54 -0.14 -1.08 16 19 C -0.15 -1.13 6.14 -26.58 -0.16 -1.29 16 20 C 0.06 0.48 6.84 37.20 0.25 0.73 16 21 O -0.38 -4.31 10.77 -35.23 -0.38 -4.69 16 22 C 0.06 0.68 5.97 37.20 0.22 0.90 16 23 C -0.21 -4.44 9.88 -26.73 -0.26 -4.70 16 24 C -0.15 -3.48 9.51 -26.74 -0.25 -3.74 16 25 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 26 H 0.06 1.69 8.14 -51.93 -0.42 1.27 16 27 H 0.03 0.74 7.94 -51.93 -0.41 0.33 16 28 H 0.40 7.72 7.47 -40.82 -0.30 7.42 16 29 H 0.39 4.92 7.68 -40.82 -0.31 4.61 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 1.05 7.25 -51.93 -0.38 0.68 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 41 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.08 2.00 8.14 -51.93 -0.42 1.57 16 43 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -30.42 350.15 -9.28 -39.69 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -7.29 Total: 10.69 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.97 Total: -2.05 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.02 Total: -49.73 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.29 Total: -19.03 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.42 -9.28 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430449455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.344 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds