Wall clock time and date at job start Tue Mar 31 2020 05:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 119.99994 * 2 1 4 4 H 1.48497 * 109.47354 * 270.10179 * 3 2 1 5 5 H 1.48498 * 109.47337 * 30.10557 * 3 2 1 6 6 H 1.48504 * 109.47315 * 150.10609 * 3 2 1 7 7 C 1.37877 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99640 * 359.21480 * 7 2 1 9 9 C 1.50703 * 120.00114 * 179.21487 * 7 2 1 10 10 C 1.53000 * 115.54829 * 86.84723 * 9 7 2 11 11 N 1.46497 * 109.47310 * 64.86406 * 10 9 7 12 12 C 1.34780 * 119.99723 * 184.67121 * 11 10 9 13 13 O 1.21584 * 120.00018 * 5.19915 * 12 11 10 14 14 N 1.34772 * 119.99900 * 185.19260 * 12 11 10 15 15 C 1.46502 * 120.00158 * 175.03061 * 14 12 11 16 16 C 1.52995 * 109.47303 * 180.02562 * 15 14 12 17 17 O 1.42899 * 109.47142 * 65.00149 * 16 15 14 18 18 C 1.42905 * 114.00106 * 180.02562 * 17 16 15 19 19 C 1.52994 * 109.47146 * 180.02562 * 18 17 16 20 20 C 1.53003 * 117.49559 * 243.61984 * 19 18 17 21 21 C 1.52995 * 59.99958 * 252.51076 * 20 19 18 22 22 C 1.52994 * 117.49483 * 232.51204 * 9 7 2 23 23 C 1.52996 * 117.49691 * 301.17477 * 9 7 2 24 24 H 0.97004 * 119.99924 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.46566 * 304.86063 * 10 9 7 26 26 H 1.09001 * 109.47056 * 184.86932 * 10 9 7 27 27 H 0.96996 * 120.00122 * 4.66980 * 11 10 9 28 28 H 0.97007 * 119.99960 * 355.03344 * 14 12 11 29 29 H 1.08997 * 109.47038 * 59.99934 * 15 14 12 30 30 H 1.09007 * 109.46802 * 300.00305 * 15 14 12 31 31 H 1.08996 * 109.47187 * 305.00085 * 16 15 14 32 32 H 1.09009 * 109.47206 * 184.99869 * 16 15 14 33 33 H 1.09002 * 109.46980 * 59.99350 * 18 17 16 34 34 H 1.09001 * 109.46651 * 299.99916 * 18 17 16 35 35 H 1.09000 * 115.55459 * 29.32274 * 19 18 17 36 36 H 1.09001 * 117.50006 * 359.97438 * 20 19 18 37 37 H 1.09002 * 117.50283 * 145.01954 * 20 19 18 38 38 H 1.09000 * 117.49987 * 252.50905 * 21 20 19 39 39 H 1.08998 * 117.50310 * 107.49257 * 21 20 19 40 40 H 1.09007 * 117.49608 * 214.99833 * 22 9 7 41 41 H 1.08997 * 117.50520 * 0.02905 * 22 9 7 42 42 H 1.09002 * 117.49937 * 359.97429 * 23 9 7 43 43 H 1.08998 * 117.50012 * 144.97331 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4944 2.0476 -1.4000 5 1 1.4477 2.6520 0.7023 6 1 3.5478 1.4395 0.6978 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0138 9 6 3.5114 -1.1942 -0.0173 10 6 4.1876 -1.1082 1.3524 11 7 3.8779 -2.3129 2.1263 12 6 4.2906 -2.4169 3.4052 13 8 4.8364 -1.4748 3.9463 14 7 4.0980 -3.5650 4.0842 15 6 4.6420 -3.7168 5.4359 16 6 4.2847 -5.1025 5.9770 17 8 4.9371 -6.1030 5.1925 18 6 4.6678 -7.4410 5.6161 19 6 5.4141 -8.4226 4.7104 20 6 4.5741 -9.3805 3.8631 21 6 5.3487 -9.9076 5.0727 22 6 4.2049 -2.0280 -1.0965 23 6 4.2039 -0.5002 -1.1919 24 1 -0.4850 0.8401 0.0004 25 1 3.8206 -0.2303 1.8843 26 1 5.2666 -1.0283 1.2206 27 1 3.3760 -3.0358 1.7184 28 1 3.5991 -4.2910 3.6778 29 1 4.2178 -2.9519 6.0863 30 1 5.7262 -3.6074 5.4056 31 1 3.2055 -5.2459 5.9243 32 1 4.6118 -5.1833 7.0137 33 1 3.5965 -7.6326 5.5555 34 1 5.0025 -7.5704 6.6453 35 1 6.3429 -8.0504 4.2781 36 1 3.4899 -9.3116 3.9513 37 1 4.9502 -9.6386 2.8731 38 1 6.2344 -10.5125 4.8785 39 1 4.7742 -10.1853 5.9563 40 1 5.1431 -2.5152 -0.8306 41 1 3.5714 -2.5761 -1.7938 42 1 3.5697 -0.0439 -1.9519 43 1 5.1411 0.0180 -0.9887 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430680457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:55 Heat of formation + Delta-G solvation = -29.323559 kcal Electronic energy + Delta-G solvation = -21837.463007 eV Core-core repulsion = 18498.524232 eV Total energy + Delta-G solvation = -3338.938775 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.51850 -38.68179 -37.21749 -36.82576 -34.31136 -33.31179 -32.09161 -29.74482 -27.08800 -26.29752 -24.98217 -22.73826 -22.53696 -21.69544 -20.93680 -20.36240 -19.24257 -17.76447 -17.25548 -16.59864 -16.31001 -15.91241 -15.22087 -15.07083 -14.76470 -14.69492 -14.00595 -13.97400 -13.53637 -13.21595 -12.93139 -12.74170 -12.54791 -12.26206 -11.93505 -11.87555 -11.64215 -11.32128 -11.11944 -10.75836 -10.72330 -10.56126 -10.47385 -10.13569 -9.82941 -9.74094 -9.54579 -9.14337 -8.83396 -8.60283 -8.55434 -8.06698 -6.12494 -4.16626 3.13403 3.22612 3.32335 3.42356 3.49229 3.56183 3.77999 4.43922 4.44397 4.54444 4.64947 4.68267 4.87134 4.96129 4.98570 5.08158 5.11323 5.17518 5.21863 5.28278 5.31263 5.56081 5.64976 5.73736 5.76121 5.83948 5.88929 6.06662 6.11344 6.31620 6.45787 6.54694 6.73733 6.77104 6.94553 7.05191 7.13175 7.26729 7.50842 7.71789 8.44576 8.62790 8.87462 9.17410 9.50982 10.98945 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021073 B = 0.003278 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.407838 B = 8539.474344 C = 8973.994227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.079 3.921 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.256 1.256 7 C -0.488 4.488 8 H 0.077 0.923 9 C -0.015 4.015 10 C 0.175 3.825 11 N -0.719 5.719 12 C 0.701 3.299 13 O -0.606 6.606 14 N -0.748 5.748 15 C 0.145 3.855 16 C 0.051 3.949 17 O -0.381 6.381 18 C 0.093 3.907 19 C -0.153 4.153 20 C -0.176 4.176 21 C -0.176 4.176 22 C -0.179 4.179 23 C -0.193 4.193 24 H 0.265 0.735 25 H 0.064 0.936 26 H 0.038 0.962 27 H 0.399 0.601 28 H 0.398 0.602 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.013 -16.475 10.498 21.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.124 4.124 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.180 1.180 7 C -0.525 4.525 8 H 0.095 0.905 9 C -0.017 4.017 10 C 0.051 3.949 11 N -0.372 5.372 12 C 0.401 3.599 13 O -0.486 6.486 14 N -0.405 5.405 15 C 0.020 3.980 16 C -0.026 4.026 17 O -0.300 6.300 18 C 0.016 3.984 19 C -0.171 4.171 20 C -0.213 4.213 21 C -0.213 4.213 22 C -0.216 4.216 23 C -0.231 4.231 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.233 0.767 28 H 0.231 0.769 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.496 -15.430 10.829 21.108 hybrid contribution -0.331 0.199 -0.205 0.437 sum 9.165 -15.232 10.624 20.709 Atomic orbital electron populations 1.69886 1.06399 1.27219 1.49888 1.24962 0.94592 0.99179 0.93622 0.86850 0.80820 0.83221 0.78390 1.20437 1.22101 1.18006 1.20178 0.86076 0.94457 1.51816 0.90481 1.19633 0.95312 1.00651 0.86065 1.20998 0.96287 0.86229 0.91427 1.44960 1.59346 1.22219 1.10684 1.15986 0.79679 0.82685 0.81588 1.90863 1.50526 1.38160 1.69073 1.44958 1.61302 1.16996 1.17253 1.21100 0.99745 0.93754 0.83363 1.22809 0.96990 0.87930 0.94906 1.87955 1.71574 1.14079 1.56378 1.21995 0.98013 0.81841 0.96526 1.22135 1.01989 0.90359 1.02660 1.23081 0.98727 1.03496 0.95999 1.22971 1.03124 0.95444 0.99764 1.22838 1.01099 0.92912 1.04734 1.22952 1.01440 0.95086 1.03623 0.92535 0.91732 0.94336 0.76706 0.76870 0.90230 0.91164 0.92443 0.91725 0.93109 0.92995 0.86802 0.88579 0.88499 0.88451 0.88750 0.90867 0.89464 0.89167 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 3 Si 0.88 21.84 24.84 -169.99 -4.22 17.61 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 6 H -0.26 -6.15 5.79 56.52 0.33 -5.82 16 7 C -0.49 -13.04 9.29 -34.44 -0.32 -13.36 16 8 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 9 C -0.02 -0.34 0.82 -155.66 -0.13 -0.47 16 10 C 0.17 3.83 5.16 -4.04 -0.02 3.81 16 11 N -0.72 -14.10 5.46 -65.23 -0.36 -14.46 16 12 C 0.70 13.62 8.55 -86.92 -0.74 12.87 16 13 O -0.61 -14.00 16.33 5.29 0.09 -13.91 16 14 N -0.75 -11.04 5.51 -65.23 -0.36 -11.40 16 15 C 0.15 1.79 6.06 -4.04 -0.02 1.77 16 16 C 0.05 0.46 6.07 37.16 0.23 0.69 16 17 O -0.38 -4.06 10.29 -35.23 -0.36 -4.42 16 18 C 0.09 0.77 6.22 37.15 0.23 1.00 16 19 C -0.15 -1.25 6.06 -90.62 -0.55 -1.80 16 20 C -0.18 -1.30 10.18 -26.73 -0.27 -1.57 16 21 C -0.18 -1.14 10.25 -26.73 -0.27 -1.41 16 22 C -0.18 -3.48 9.96 -26.69 -0.27 -3.74 16 23 C -0.19 -4.03 7.60 -26.69 -0.20 -4.23 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.06 1.59 6.64 -51.92 -0.34 1.24 16 26 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 27 H 0.40 7.19 8.46 -40.82 -0.35 6.84 16 28 H 0.40 5.09 8.49 -40.82 -0.35 4.74 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.05 0.38 7.88 -51.93 -0.41 -0.03 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.10 0.67 8.03 -51.93 -0.42 0.26 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 1.28 8.14 -51.92 -0.42 0.85 16 41 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 42 H 0.09 1.96 7.25 -51.93 -0.38 1.59 16 43 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 357.00 15.07 5.38 5.38 Total: -1.00 -32.55 357.00 -8.87 -41.42 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -7.37 Total: 10.19 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.44 Total: -4.31 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.06 Total: -51.96 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.28 Total: -18.33 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.22 Total: 17.61 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.55 -8.87 -41.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430680457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.095 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds