Wall clock time and date at job start Tue Mar 31 2020 06:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00353 * 2 1 4 4 H 1.48491 * 109.47204 * 269.44629 * 3 2 1 5 5 H 1.48504 * 109.46548 * 29.44532 * 3 2 1 6 6 H 1.48495 * 109.47140 * 149.44167 * 3 2 1 7 7 C 1.37877 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00108 * 359.05089 * 7 2 1 9 9 C 1.50699 * 120.00342 * 179.04410 * 7 2 1 10 10 C 1.52995 * 115.54851 * 87.68455 * 9 7 2 11 11 N 1.46505 * 109.47255 * 39.93094 * 10 9 7 12 12 C 1.34773 * 120.00464 * 182.92952 * 11 10 9 13 13 O 1.21592 * 119.99691 * 5.24234 * 12 11 10 14 14 N 1.34770 * 120.00073 * 185.24376 * 12 11 10 15 15 C 1.46501 * 120.00016 * 174.70009 * 14 12 11 16 16 H 1.09000 * 109.47060 * 35.26736 * 15 14 12 17 17 C 1.52997 * 109.47507 * 155.27113 * 15 14 12 18 18 C 1.52992 * 109.47252 * 179.97438 * 17 15 14 19 19 C 1.52994 * 109.47679 * 300.00060 * 18 17 15 20 20 H 1.09004 * 109.47446 * 300.00353 * 19 18 17 21 21 O 1.42906 * 109.47507 * 179.97438 * 19 18 17 22 22 C 1.53004 * 109.47240 * 59.99902 * 19 18 17 23 23 C 1.53002 * 109.46656 * 275.27115 * 15 14 12 24 24 C 1.52999 * 117.52322 * 233.39057 * 9 7 2 25 25 C 1.53002 * 60.00121 * 107.47781 * 24 9 7 26 26 H 0.97001 * 120.00037 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47413 * 279.93050 * 10 9 7 28 28 H 1.08998 * 109.47202 * 159.92845 * 10 9 7 29 29 H 0.97004 * 119.99230 * 2.92580 * 11 10 9 30 30 H 0.96994 * 120.00091 * 354.96315 * 14 12 11 31 31 H 1.08999 * 109.47104 * 299.99678 * 17 15 14 32 32 H 1.09004 * 109.46558 * 59.99822 * 17 15 14 33 33 H 1.08998 * 109.47119 * 60.00290 * 18 17 15 34 34 H 1.09005 * 109.47203 * 179.97438 * 18 17 15 35 35 H 0.96700 * 114.00042 * 180.02562 * 21 19 18 36 36 H 1.09006 * 109.46978 * 59.99618 * 22 19 18 37 37 H 1.08999 * 109.47516 * 180.02562 * 22 19 18 38 38 H 1.09000 * 109.47077 * 299.99611 * 23 15 14 39 39 H 1.09002 * 109.46979 * 59.99853 * 23 15 14 40 40 H 1.08990 * 117.49933 * 214.97183 * 24 9 7 41 41 H 1.09001 * 117.49649 * 359.97438 * 24 9 7 42 42 H 1.08998 * 117.50416 * 252.50892 * 25 24 9 43 43 H 1.09000 * 117.49450 * 107.48956 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5084 2.0396 -1.3999 5 1 1.4408 2.6560 0.6883 6 1 3.5407 1.4435 0.7118 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0145 9 6 3.5113 -1.1942 -0.0223 10 6 4.1910 -1.1277 1.3468 11 7 3.4595 -1.9698 2.2966 12 6 3.8437 -2.0200 3.5874 13 8 4.7357 -1.2955 3.9849 14 7 3.2393 -2.8732 4.4377 15 6 3.7326 -3.0120 5.8102 16 1 4.0872 -2.0455 6.1683 17 6 2.5995 -3.5057 6.7120 18 6 3.1149 -3.6512 8.1451 19 6 4.2653 -4.6594 8.1736 20 1 3.9106 -5.6258 7.8152 21 8 4.7471 -4.7949 9.5121 22 6 5.3985 -4.1658 7.2718 23 6 4.8833 -4.0200 5.8389 24 6 4.2025 -2.0121 -1.1151 25 6 4.2010 -0.4838 -1.1887 26 1 -0.4850 0.8400 0.0004 27 1 4.1931 -0.0970 1.7017 28 1 5.2173 -1.4843 1.2606 29 1 2.6986 -2.4912 1.9963 30 1 2.4800 -3.3982 4.1399 31 1 1.7798 -2.7876 6.6915 32 1 2.2450 -4.4722 6.3538 33 1 3.4697 -2.6849 8.5035 34 1 2.3075 -4.0025 8.7877 35 1 5.4792 -5.4197 9.6053 36 1 5.7533 -3.1994 7.6301 37 1 6.2180 -4.8842 7.2917 38 1 4.5287 -4.9865 5.4808 39 1 5.6905 -3.6683 5.1964 40 1 5.1413 -2.5027 -0.8587 41 1 3.5673 -2.5506 -1.8185 42 1 3.5650 -0.0167 -1.9406 43 1 5.1391 0.0309 -0.9807 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430894059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:19 Heat of formation + Delta-G solvation = -74.486288 kcal Electronic energy + Delta-G solvation = -22614.919727 eV Core-core repulsion = 19274.022549 eV Total energy + Delta-G solvation = -3340.897177 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.94276 -38.70319 -37.14983 -35.98069 -33.40566 -32.97405 -32.17292 -31.03293 -28.52099 -26.28184 -25.09224 -22.99788 -22.23624 -21.70004 -20.30684 -20.05496 -19.28363 -17.65513 -17.41480 -16.71871 -16.03277 -15.33029 -15.13360 -14.74553 -14.69047 -14.25371 -13.92003 -13.86423 -13.35257 -12.96874 -12.87231 -12.52450 -12.46431 -12.36905 -12.29239 -11.96775 -11.52658 -11.33401 -11.17747 -10.82486 -10.68249 -10.50410 -10.46562 -10.18349 -10.01215 -9.75196 -9.55673 -9.17217 -8.83575 -8.66016 -8.61038 -8.01768 -6.19941 -4.25165 3.17169 3.28346 3.38434 3.44701 3.75671 3.94550 4.38516 4.47255 4.54858 4.69016 4.88755 4.92740 5.02174 5.04318 5.14065 5.17748 5.25687 5.33826 5.51988 5.69136 5.72814 5.81621 5.88570 5.93371 5.95122 6.00284 6.08293 6.15537 6.24524 6.31278 6.44425 6.53878 6.71831 6.83784 6.94951 7.07558 7.30038 7.38279 7.53123 7.67014 8.36886 8.67717 8.79054 9.19673 9.44067 10.90798 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027938 B = 0.003680 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.993688 B = 7607.381685 C = 8002.869733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.084 3.916 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.255 1.255 7 C -0.492 4.492 8 H 0.078 0.922 9 C -0.015 4.015 10 C 0.172 3.828 11 N -0.715 5.715 12 C 0.700 3.300 13 O -0.609 6.609 14 N -0.749 5.749 15 C 0.164 3.836 16 H 0.088 0.912 17 C -0.124 4.124 18 C -0.108 4.108 19 C 0.103 3.897 20 H 0.055 0.945 21 O -0.570 6.570 22 C -0.148 4.148 23 C -0.128 4.128 24 C -0.179 4.179 25 C -0.196 4.196 26 H 0.266 0.734 27 H 0.060 0.940 28 H 0.041 0.959 29 H 0.405 0.595 30 H 0.395 0.605 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.376 0.624 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.337 -10.295 12.553 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.120 4.120 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.180 1.180 7 C -0.530 4.530 8 H 0.096 0.904 9 C -0.016 4.016 10 C 0.048 3.952 11 N -0.369 5.369 12 C 0.399 3.601 13 O -0.489 6.489 14 N -0.404 5.404 15 C 0.058 3.942 16 H 0.106 0.894 17 C -0.162 4.162 18 C -0.146 4.146 19 C 0.044 3.956 20 H 0.073 0.927 21 O -0.376 6.376 22 C -0.186 4.186 23 C -0.167 4.167 24 C -0.216 4.216 25 C -0.234 4.234 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.242 0.758 30 H 0.229 0.771 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.223 0.777 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.522 -9.069 12.976 17.528 hybrid contribution 0.109 0.088 -0.602 0.618 sum 7.631 -8.981 12.374 17.088 Atomic orbital electron populations 1.69879 1.06396 1.27350 1.49419 1.24949 0.94545 0.99180 0.93333 0.86871 0.80817 0.83160 0.78433 1.20412 1.22176 1.17975 1.20123 0.86064 0.94403 1.52370 0.90394 1.19622 0.95364 1.00504 0.86142 1.20889 0.92193 0.93841 0.88319 1.45058 1.35557 1.49877 1.06413 1.16032 0.82104 0.80607 0.81322 1.90850 1.34862 1.45813 1.77346 1.45124 1.36758 1.46479 1.12072 1.20728 0.93103 0.99618 0.80769 0.89358 1.21771 0.98170 1.02257 0.94049 1.21395 0.97134 0.99669 0.96380 1.21885 0.93862 0.98078 0.81734 0.92683 1.86509 1.55207 1.67648 1.28197 1.22216 0.98167 1.02595 0.95623 1.21903 0.99082 0.99624 0.96071 1.22892 1.01026 0.92974 1.04709 1.22943 1.01514 0.94984 1.03927 0.92455 0.92197 0.94047 0.75842 0.77115 0.90326 0.91183 0.90843 0.90867 0.77666 0.90831 0.91682 0.91818 0.90943 0.90887 0.89502 0.89209 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.96 55.43 0.77 -25.16 16 2 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 3 Si 0.88 21.48 25.01 -169.99 -4.25 17.23 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.26 -6.09 5.43 56.52 0.31 -5.78 16 7 C -0.49 -12.62 8.07 -34.44 -0.28 -12.90 16 8 H 0.08 2.13 8.06 -52.48 -0.42 1.71 16 9 C -0.02 -0.33 1.17 -155.66 -0.18 -0.51 16 10 C 0.17 3.67 5.59 -4.04 -0.02 3.65 16 11 N -0.72 -14.02 5.32 -65.22 -0.35 -14.37 16 12 C 0.70 13.32 8.52 -86.93 -0.74 12.58 16 13 O -0.61 -13.67 15.98 5.28 0.08 -13.59 16 14 N -0.75 -10.74 5.08 -58.68 -0.30 -11.04 16 15 C 0.16 2.03 2.50 -67.93 -0.17 1.86 16 16 H 0.09 1.31 7.51 -51.93 -0.39 0.92 16 17 C -0.12 -1.19 5.39 -26.74 -0.14 -1.34 16 18 C -0.11 -1.00 5.57 -26.74 -0.15 -1.15 16 19 C 0.10 0.90 3.47 -26.73 -0.09 0.81 16 20 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 21 O -0.57 -5.17 13.32 -35.23 -0.47 -5.64 16 22 C -0.15 -1.37 5.54 -26.75 -0.15 -1.52 16 23 C -0.13 -1.42 5.49 -26.75 -0.15 -1.56 16 24 C -0.18 -3.44 9.88 -26.73 -0.26 -3.71 16 25 C -0.20 -4.03 7.60 -26.73 -0.20 -4.23 16 26 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.06 1.41 6.38 -51.93 -0.33 1.08 16 28 H 0.04 0.84 7.95 -51.93 -0.41 0.42 16 29 H 0.41 7.65 7.53 -40.82 -0.31 7.34 16 30 H 0.40 4.78 8.62 -40.82 -0.35 4.43 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.38 1.85 9.08 45.56 0.41 2.26 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 41 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 42 H 0.09 1.93 7.17 -51.93 -0.37 1.56 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 340.84 15.07 5.14 5.14 Total: -1.00 -31.71 340.84 -8.48 -40.19 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -6.47 Total: 13.09 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -2.64 Total: -5.85 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.13 Total: -50.57 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.38 Total: -19.22 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.25 Total: 17.23 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.71 -8.48 -40.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430894059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.294 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds