Wall clock time and date at job start Tue Mar 31 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99762 * 2 1 4 4 H 1.48499 * 109.46942 * 240.00538 * 3 2 1 5 5 H 1.48501 * 109.47046 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46810 * 120.00442 * 3 2 1 7 7 C 1.37871 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00418 * 183.41839 * 7 2 1 9 9 C 1.50705 * 120.00114 * 3.41980 * 7 2 1 10 10 C 1.53003 * 115.54954 * 324.36578 * 9 7 2 11 11 N 1.46505 * 109.46511 * 306.97221 * 10 9 7 12 12 C 1.34779 * 119.99730 * 184.88531 * 11 10 9 13 13 O 1.21588 * 120.00060 * 354.97732 * 12 11 10 14 14 N 1.34777 * 120.00218 * 174.97979 * 12 11 10 15 15 C 1.47427 * 125.64560 * 3.68656 * 14 12 11 16 16 C 1.54911 * 104.82963 * 155.83048 * 15 14 12 17 17 C 1.55157 * 101.58285 * 37.01033 * 16 15 14 18 18 C 1.47019 * 125.64794 * 183.63962 * 14 12 11 19 19 H 1.09000 * 109.88552 * 300.51392 * 18 14 12 20 20 C 1.52999 * 109.88446 * 61.68758 * 18 14 12 21 21 C 1.53005 * 109.46872 * 299.09675 * 20 18 14 22 22 O 1.42897 * 109.46728 * 187.87894 * 21 20 18 23 23 C 1.52999 * 117.49811 * 110.02827 * 9 7 2 24 24 C 1.52992 * 117.50207 * 178.68834 * 9 7 2 25 25 H 0.96998 * 120.00580 * 4.99296 * 1 2 3 26 26 H 1.09000 * 109.47321 * 186.97904 * 10 9 7 27 27 H 1.08995 * 109.47129 * 66.96978 * 10 9 7 28 28 H 0.96997 * 120.00063 * 4.88820 * 11 10 9 29 29 H 1.09008 * 110.36381 * 36.99278 * 15 14 12 30 30 H 1.08997 * 110.45810 * 274.71759 * 15 14 12 31 31 H 1.08999 * 111.00094 * 278.93727 * 16 15 14 32 32 H 1.08999 * 111.00281 * 155.09160 * 16 15 14 33 33 H 1.08997 * 110.71591 * 82.85688 * 17 16 15 34 34 H 1.08995 * 110.72004 * 206.13480 * 17 16 15 35 35 H 1.09000 * 109.47333 * 59.09095 * 20 18 14 36 36 H 1.08995 * 109.47257 * 179.09292 * 20 18 14 37 37 H 1.08996 * 109.46807 * 307.87561 * 21 20 18 38 38 H 1.08991 * 109.47262 * 67.87466 * 21 20 18 39 39 H 0.96700 * 113.99612 * 180.02562 * 22 21 20 40 40 H 1.09009 * 117.49964 * 215.00442 * 23 9 7 41 41 H 1.08998 * 117.50264 * 0.02874 * 23 9 7 42 42 H 1.09004 * 117.50000 * 359.97438 * 24 9 7 43 43 H 1.08998 * 117.49853 * 144.97209 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0831 -1.1948 0.0552 9 6 1.2531 -2.4980 -0.0790 10 6 -0.0882 -2.5319 0.6563 11 7 0.1047 -2.1036 2.0440 12 6 -0.9251 -2.1484 2.9124 13 8 -2.0351 -2.4566 2.5237 14 7 -0.7244 -1.8514 4.2116 15 6 0.5456 -1.3901 4.8013 16 6 0.1324 -0.6205 6.0806 17 6 -1.0616 -1.4734 6.5852 18 6 -1.7360 -1.9329 5.2753 19 1 -2.5746 -1.2775 5.0404 20 6 -2.2240 -3.3758 5.4199 21 6 -2.8619 -3.8324 4.1062 22 8 -3.4794 -5.1072 4.2945 23 6 1.3690 -3.3032 -1.3748 24 6 2.0764 -3.7872 -0.1066 25 1 -0.4851 0.8368 -0.0731 26 1 -0.4853 -3.5469 0.6412 27 1 -0.7901 -1.8597 0.1628 28 1 0.9735 -1.7879 2.3378 29 1 1.0656 -0.7262 4.1105 30 1 1.1777 -2.2403 5.0575 31 1 -0.1860 0.3939 5.8406 32 1 0.9423 -0.6118 6.8101 33 1 -0.7082 -2.3305 7.1583 34 1 -1.7453 -0.8666 7.1787 35 1 -1.3798 -4.0228 5.6579 36 1 -2.9615 -3.4314 6.2205 37 1 -3.6137 -3.1068 3.7960 38 1 -2.0935 -3.9108 3.3372 39 1 -3.9047 -5.4593 3.5006 40 1 0.4896 -3.8572 -1.7034 41 1 1.9890 -2.8901 -2.1703 42 1 3.1616 -3.6923 -0.0685 43 1 1.6627 -4.6594 0.3995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431211022.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:21 Heat of formation + Delta-G solvation = -33.647062 kcal Electronic energy + Delta-G solvation = -23797.267655 eV Core-core repulsion = 20458.141399 eV Total energy + Delta-G solvation = -3339.126256 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.10226 -37.55292 -36.52521 -36.23838 -33.31515 -32.24432 -31.53300 -31.03647 -27.10649 -25.98349 -25.23554 -23.19867 -21.52681 -21.23298 -20.91343 -19.27556 -18.63445 -17.79968 -17.09418 -16.17897 -16.14770 -14.96457 -14.77814 -14.70997 -14.16581 -13.91156 -13.74334 -13.31033 -13.07465 -12.99541 -12.69035 -12.36328 -12.31700 -11.85945 -11.44845 -11.38133 -11.17209 -11.11352 -10.97285 -10.80504 -10.71469 -10.54146 -10.47621 -10.26854 -9.67740 -9.34912 -9.18074 -8.95988 -8.84642 -8.29349 -8.02376 -7.58508 -6.02252 -4.21957 3.18782 3.25792 3.27532 3.28641 3.96767 4.26651 4.43182 4.57047 4.75562 4.86263 5.00483 5.15878 5.30468 5.45328 5.47301 5.51075 5.59975 5.72365 5.86432 5.87847 5.93415 6.02248 6.05501 6.16344 6.25592 6.30020 6.51808 6.53249 6.61038 6.67073 6.70714 6.75491 6.89882 7.09908 7.25235 7.57449 7.72299 7.80962 7.96296 8.07778 8.29823 8.73983 8.94614 9.40835 9.46613 10.87014 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016032 B = 0.006257 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.046890 B = 4474.106097 C = 5517.969639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.074 3.926 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.498 4.498 8 H 0.060 0.940 9 C 0.036 3.964 10 C 0.186 3.814 11 N -0.695 5.695 12 C 0.711 3.289 13 O -0.593 6.593 14 N -0.639 5.639 15 C 0.101 3.899 16 C -0.131 4.131 17 C -0.126 4.126 18 C 0.160 3.840 19 H 0.071 0.929 20 C -0.124 4.124 21 C 0.062 3.938 22 O -0.599 6.599 23 C -0.198 4.198 24 C -0.212 4.212 25 H 0.263 0.737 26 H 0.017 0.983 27 H 0.108 0.892 28 H 0.396 0.604 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.374 0.626 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.768 -2.230 11.050 11.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.536 4.536 8 H 0.078 0.922 9 C 0.035 3.965 10 C 0.062 3.938 11 N -0.345 5.345 12 C 0.414 3.586 13 O -0.475 6.475 14 N -0.379 5.379 15 C -0.023 4.023 16 C -0.169 4.169 17 C -0.164 4.164 18 C 0.055 3.945 19 H 0.089 0.911 20 C -0.163 4.163 21 C -0.014 4.014 22 O -0.405 6.405 23 C -0.237 4.237 24 C -0.249 4.249 25 H 0.073 0.927 26 H 0.035 0.965 27 H 0.126 0.874 28 H 0.230 0.770 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.220 0.780 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.506 -2.248 11.297 11.616 hybrid contribution 0.776 1.027 -0.577 1.410 sum -0.730 -1.221 10.720 10.814 Atomic orbital electron populations 1.69907 1.05589 1.26831 1.47592 1.25002 0.94854 0.98981 0.94195 0.86664 0.79571 0.83082 0.78738 1.20210 1.21261 1.20202 1.20461 0.92512 0.88648 1.51929 0.92214 1.19238 0.93099 0.89851 0.94282 1.20882 0.97744 0.95881 0.79244 1.44869 1.11515 1.67572 1.10587 1.15424 0.85116 0.78876 0.79210 1.90790 1.23112 1.56296 1.77283 1.47593 1.11728 1.72481 1.06086 1.22197 0.87166 0.97934 0.95011 1.22747 0.98143 0.99228 0.96796 1.22681 0.97678 1.00027 0.96016 1.21257 0.91251 0.95699 0.86301 0.91072 1.21971 1.00322 0.95594 0.98375 1.23509 0.97962 0.82940 0.96996 1.86295 1.76297 1.37766 1.40167 1.22939 1.01537 1.06576 0.92621 1.22948 0.98231 1.00162 1.03577 0.92673 0.96451 0.87422 0.76965 0.90553 0.91945 0.90628 0.90108 0.90518 0.90244 0.91862 0.91428 0.93278 0.88942 0.78009 0.91466 0.90232 0.90699 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.64 10.15 55.43 0.56 -22.08 16 2 C 0.07 1.87 5.28 -17.82 -0.09 1.77 16 3 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.50 -12.43 8.24 -34.44 -0.28 -12.71 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.04 0.84 2.08 -155.66 -0.32 0.52 16 10 C 0.19 4.37 4.61 -4.04 -0.02 4.35 16 11 N -0.70 -14.99 5.00 -65.22 -0.33 -15.32 16 12 C 0.71 14.81 7.40 -86.92 -0.64 14.16 16 13 O -0.59 -13.64 11.58 5.29 0.06 -13.58 16 14 N -0.64 -10.72 3.06 -168.68 -0.52 -11.23 16 15 C 0.10 1.37 6.55 -2.53 -0.02 1.35 16 16 C -0.13 -1.38 7.08 -24.58 -0.17 -1.55 16 17 C -0.13 -1.31 6.48 -24.89 -0.16 -1.47 16 18 C 0.16 2.29 3.17 -66.95 -0.21 2.08 16 19 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 20 C -0.12 -1.85 5.16 -26.73 -0.14 -1.99 16 21 C 0.06 1.09 5.16 37.16 0.19 1.29 16 22 O -0.60 -9.99 13.66 -35.23 -0.48 -10.47 16 23 C -0.20 -4.29 9.96 -26.70 -0.27 -4.56 16 24 C -0.21 -4.40 9.92 -26.70 -0.26 -4.66 16 25 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 26 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 27 H 0.11 2.89 6.01 -51.93 -0.31 2.57 16 28 H 0.40 8.34 6.40 -40.82 -0.26 8.08 16 29 H 0.08 1.12 7.36 -51.92 -0.38 0.74 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.73 7.85 -51.93 -0.41 0.32 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.93 7.34 -51.93 -0.38 0.55 16 38 H 0.09 1.90 4.66 -54.91 -0.26 1.64 16 39 H 0.37 4.85 9.12 45.56 0.42 5.27 16 40 H 0.07 1.38 8.14 -51.92 -0.42 0.95 16 41 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 42 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 337.93 15.07 5.09 5.09 Total: -1.00 -28.54 337.93 -9.24 -37.78 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -6.20 Total: 16.52 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -2.41 Total: -1.43 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.28 Total: -48.63 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.42 Total: -24.05 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.54 -9.24 -37.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431211022.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.131 kcal (2) G-P(sol) polarization free energy of solvation -28.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds