Wall clock time and date at job start Tue Mar 31 2020 06:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00101 * 2 1 4 4 H 1.48502 * 109.47029 * 271.24602 * 3 2 1 5 5 H 1.48490 * 109.47452 * 31.24854 * 3 2 1 6 6 H 1.48505 * 109.46857 * 151.25075 * 3 2 1 7 7 C 1.37878 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00168 * 358.80841 * 7 2 1 9 9 C 1.50704 * 120.00283 * 178.81069 * 7 2 1 10 10 C 1.53003 * 115.54769 * 86.79615 * 9 7 2 11 11 N 1.46496 * 109.46825 * 64.85760 * 10 9 7 12 12 C 1.34783 * 119.99688 * 184.71969 * 11 10 9 13 13 O 1.21588 * 120.00141 * 5.10660 * 12 11 10 14 14 N 1.34774 * 119.99857 * 185.10129 * 12 11 10 15 15 C 1.46496 * 119.99945 * 174.94449 * 14 12 11 16 16 H 1.09003 * 110.06066 * 326.42173 * 15 14 12 17 17 C 1.54222 * 110.08607 * 88.01355 * 15 14 12 18 18 C 1.54271 * 106.63732 * 119.19533 * 17 15 14 19 19 C 1.54889 * 104.19350 * 336.40366 * 18 17 15 20 20 C 1.54267 * 110.03684 * 205.00421 * 15 14 12 21 21 H 1.08998 * 110.48602 * 145.64796 * 20 15 14 22 22 C 1.53000 * 110.48183 * 23.13818 * 20 15 14 23 23 O 1.42904 * 109.47014 * 176.84040 * 22 20 15 24 24 C 1.52991 * 117.49943 * 232.47119 * 9 7 2 25 25 C 1.53006 * 117.49489 * 301.13429 * 9 7 2 26 26 H 0.96998 * 120.00108 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47456 * 304.84933 * 10 9 7 28 28 H 1.09007 * 109.46676 * 184.85120 * 10 9 7 29 29 H 0.96997 * 120.00809 * 4.71553 * 11 10 9 30 30 H 0.97002 * 120.00222 * 354.95623 * 14 12 11 31 31 H 1.09003 * 110.00032 * 359.90770 * 17 15 14 32 32 H 1.09002 * 110.06569 * 238.52109 * 17 15 14 33 33 H 1.08996 * 110.48543 * 217.72532 * 18 17 15 34 34 H 1.08999 * 110.59522 * 95.13819 * 18 17 15 35 35 H 1.08995 * 110.75783 * 279.62726 * 19 18 17 36 36 H 1.08998 * 110.91450 * 156.32812 * 19 18 17 37 37 H 1.08995 * 109.47216 * 296.83941 * 22 20 15 38 38 H 1.09002 * 109.47549 * 56.84424 * 22 20 15 39 39 H 0.96698 * 114.00496 * 179.97438 * 23 22 20 40 40 H 1.09003 * 117.50186 * 214.99531 * 24 9 7 41 41 H 1.09001 * 117.50365 * 0.02562 * 24 9 7 42 42 H 1.08995 * 117.49629 * 359.96767 * 25 9 7 43 43 H 1.08993 * 117.49510 * 144.97606 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4702 2.0616 -1.3998 5 1 1.4601 2.6449 0.7262 6 1 3.5597 1.4325 0.6734 7 6 2.0044 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0204 9 6 3.5112 -1.1944 -0.0266 10 6 4.1957 -1.1024 1.3387 11 7 3.8906 -2.3037 2.1198 12 6 4.3101 -2.4016 3.3969 13 8 4.8602 -1.4575 3.9303 14 7 4.1198 -3.5461 4.0828 15 6 4.6727 -3.6923 5.4315 16 1 5.6168 -3.1529 5.5091 17 6 3.6699 -3.1605 6.4755 18 6 3.3149 -4.3493 7.3925 19 6 3.6109 -5.5987 6.5262 20 6 4.8890 -5.1851 5.7551 21 1 5.7715 -5.3157 6.3813 22 6 5.0234 -5.9983 4.4661 23 8 5.2959 -7.3632 4.7903 24 6 4.1982 -2.0328 -1.1063 25 6 4.1966 -0.5054 -1.2083 26 1 -0.4850 0.8400 -0.0004 27 1 3.8323 -0.2221 1.8689 28 1 5.2741 -1.0235 1.1999 29 1 3.3867 -3.0285 1.7179 30 1 3.6170 -4.2730 3.6833 31 1 2.7730 -2.7925 5.9773 32 1 4.1267 -2.3617 7.0598 33 1 2.2608 -4.3171 7.6679 34 1 3.9416 -4.3461 8.2843 35 1 2.7898 -5.7940 5.8365 36 1 3.8028 -6.4699 7.1526 37 1 4.0941 -5.9379 3.8998 38 1 5.8408 -5.5971 3.8669 39 1 5.3933 -7.9387 4.0193 40 1 5.1379 -2.5189 -0.8441 41 1 3.5604 -2.5839 -1.7974 42 1 3.5577 -0.0524 -1.9664 43 1 5.1350 0.0135 -1.0131 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458723870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:23 Heat of formation + Delta-G solvation = -62.988473 kcal Electronic energy + Delta-G solvation = -22861.334279 eV Core-core repulsion = 19520.935684 eV Total energy + Delta-G solvation = -3340.398595 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.11751 -38.45864 -37.06506 -36.31445 -33.50683 -33.06341 -32.12775 -30.21852 -28.00364 -26.32563 -25.03217 -24.44483 -21.78543 -20.89653 -20.64374 -19.57019 -19.25851 -18.23351 -17.25437 -16.46271 -16.03690 -15.47041 -15.19717 -14.92666 -14.83925 -14.54621 -13.98549 -13.92700 -13.50827 -13.12022 -12.90795 -12.68874 -12.48244 -12.16179 -11.70405 -11.37604 -11.19390 -11.15378 -11.05213 -10.86392 -10.76534 -10.66528 -10.52616 -10.18510 -10.10913 -9.81631 -9.59393 -9.19566 -8.91058 -8.64779 -8.59980 -8.15898 -6.16138 -4.20633 3.09366 3.29048 3.39621 3.45604 3.67050 3.88706 4.40306 4.44102 4.49009 4.60005 4.82050 4.98938 5.09661 5.13791 5.18538 5.26068 5.40560 5.47810 5.51019 5.59556 5.67799 5.68098 5.87781 5.94913 6.00819 6.05868 6.10245 6.14746 6.25015 6.30746 6.40005 6.49347 6.68644 6.78321 7.00014 7.07743 7.18463 7.37938 7.41218 7.67407 8.40157 8.53430 8.83302 9.09461 9.47183 10.95235 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021490 B = 0.004260 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.616576 B = 6571.284519 C = 7027.054813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.080 3.920 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.256 1.256 7 C -0.489 4.489 8 H 0.077 0.923 9 C -0.016 4.016 10 C 0.175 3.825 11 N -0.720 5.720 12 C 0.700 3.300 13 O -0.601 6.601 14 N -0.749 5.749 15 C 0.171 3.829 16 H 0.091 0.909 17 C -0.136 4.136 18 C -0.126 4.126 19 C -0.113 4.113 20 C -0.100 4.100 21 H 0.092 0.908 22 C 0.084 3.916 23 O -0.574 6.574 24 C -0.179 4.179 25 C -0.192 4.192 26 H 0.265 0.735 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.398 0.602 30 H 0.393 0.607 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.379 0.621 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.982 -12.055 9.123 17.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.123 4.123 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.180 1.180 7 C -0.526 4.526 8 H 0.095 0.905 9 C -0.017 4.017 10 C 0.050 3.950 11 N -0.373 5.373 12 C 0.400 3.600 13 O -0.480 6.480 14 N -0.407 5.407 15 C 0.064 3.936 16 H 0.109 0.891 17 C -0.175 4.175 18 C -0.163 4.163 19 C -0.151 4.151 20 C -0.119 4.119 21 H 0.110 0.890 22 C 0.007 3.993 23 O -0.379 6.379 24 C -0.216 4.216 25 C -0.230 4.230 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.232 0.768 30 H 0.228 0.772 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.226 0.774 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.315 -10.797 10.187 17.525 hybrid contribution -0.182 0.191 -1.077 1.109 sum 9.133 -10.606 9.110 16.700 Atomic orbital electron populations 1.69881 1.06402 1.27259 1.49724 1.24957 0.94580 0.99167 0.93583 0.86858 0.80862 0.83288 0.78345 1.20447 1.22037 1.18019 1.20157 0.86024 0.94439 1.51976 0.90518 1.19641 0.95385 1.00649 0.86024 1.21011 0.96279 0.86307 0.91356 1.44991 1.59084 1.22322 1.10861 1.16030 0.79712 0.82832 0.81453 1.90872 1.50157 1.37584 1.69411 1.45360 1.60676 1.17304 1.17320 1.21372 0.97302 0.93865 0.81017 0.89120 1.22690 0.99906 0.97882 0.96994 1.22375 1.01355 0.94547 0.98050 1.22505 0.96436 0.97670 0.98466 1.22271 1.00024 0.93104 0.96471 0.88969 1.22143 0.99195 0.81689 0.96316 1.86452 1.94752 1.19688 1.37050 1.22836 1.01015 0.92943 1.04817 1.22949 1.01424 0.95073 1.03566 0.92500 0.91689 0.94330 0.76817 0.77171 0.90761 0.91128 0.91547 0.91621 0.91437 0.91149 0.93510 0.93187 0.77424 0.90935 0.89467 0.89155 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 13.96 55.43 0.77 -25.75 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 3 Si 0.88 21.52 24.88 -169.99 -4.23 17.29 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.26 -6.05 5.74 56.52 0.32 -5.73 16 7 C -0.49 -12.77 9.29 -34.44 -0.32 -13.09 16 8 H 0.08 2.16 8.06 -52.48 -0.42 1.73 16 9 C -0.02 -0.34 0.81 -155.66 -0.13 -0.47 16 10 C 0.17 3.69 5.14 -4.04 -0.02 3.67 16 11 N -0.72 -13.31 5.46 -65.22 -0.36 -13.66 16 12 C 0.70 12.74 8.55 -86.91 -0.74 11.99 16 13 O -0.60 -13.23 16.03 5.29 0.08 -13.15 16 14 N -0.75 -10.11 4.35 -57.40 -0.25 -10.36 16 15 C 0.17 2.08 3.10 -66.63 -0.21 1.87 16 16 H 0.09 1.24 7.64 -51.93 -0.40 0.85 16 17 C -0.14 -1.63 6.61 -25.43 -0.17 -1.80 16 18 C -0.13 -1.20 6.83 -25.07 -0.17 -1.37 16 19 C -0.11 -1.06 6.21 -24.74 -0.15 -1.22 16 20 C -0.10 -0.98 3.09 -88.96 -0.27 -1.26 16 21 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 22 C 0.08 0.78 5.58 37.16 0.21 0.98 16 23 O -0.57 -5.22 13.54 -35.23 -0.48 -5.70 16 24 C -0.18 -3.35 9.96 -26.69 -0.27 -3.62 16 25 C -0.19 -3.90 7.60 -26.69 -0.20 -4.10 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.06 1.56 6.62 -51.93 -0.34 1.21 16 28 H 0.04 0.78 8.09 -51.92 -0.42 0.36 16 29 H 0.40 6.69 8.46 -40.82 -0.35 6.35 16 30 H 0.39 4.44 6.54 -40.82 -0.27 4.17 16 31 H 0.07 1.03 7.92 -51.93 -0.41 0.62 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.64 8.00 -51.93 -0.42 0.23 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.40 6.34 -51.93 -0.33 0.07 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.38 1.88 9.12 45.56 0.42 2.30 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 42 H 0.09 1.92 7.27 -51.93 -0.38 1.55 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 342.06 15.07 5.15 5.15 Total: -1.00 -32.17 342.06 -8.17 -40.35 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -6.33 Total: 12.11 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -2.54 Total: -6.27 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.17 Total: -49.78 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.39 Total: -18.84 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.23 Total: 17.29 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.17 -8.17 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458723870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.643 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds