Wall clock time and date at job start Tue Mar 31 2020 05:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00214 * 2 1 4 4 H 1.48498 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46924 * 300.00108 * 3 2 1 6 6 H 1.48495 * 109.46930 * 59.99999 * 3 2 1 7 7 C 1.38818 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99647 * 163.07085 * 7 2 1 9 9 N 1.36932 * 119.99987 * 343.06995 * 7 2 1 10 10 C 1.46924 * 120.63327 * 331.85150 * 9 7 2 11 11 C 1.53201 * 108.77349 * 233.58649 * 10 9 7 12 12 C 1.53039 * 109.31128 * 305.36074 * 11 10 9 13 13 C 1.53002 * 109.45899 * 181.38670 * 12 11 10 14 14 N 1.46496 * 109.47091 * 174.97620 * 13 12 11 15 15 C 1.34776 * 120.00177 * 180.02562 * 14 13 12 16 16 O 1.21513 * 119.99961 * 359.97438 * 15 14 13 17 17 O 1.34631 * 120.00603 * 179.97438 * 15 14 13 18 18 C 1.45198 * 117.00530 * 179.97438 * 17 15 14 19 19 C 1.53781 * 113.61676 * 150.00281 * 18 17 15 20 20 C 1.53784 * 87.08343 * 89.19894 * 19 18 17 21 21 C 1.53781 * 87.07875 * 25.43184 * 20 19 18 22 22 C 1.53037 * 109.52567 * 61.37415 * 12 11 10 23 23 C 1.46926 * 120.63037 * 151.82555 * 9 7 2 24 24 H 0.97004 * 119.99666 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.58832 * 113.79835 * 10 9 7 26 26 H 1.09004 * 109.70361 * 353.44110 * 10 9 7 27 27 H 1.09007 * 109.49419 * 185.41064 * 11 10 9 28 28 H 1.08997 * 109.52448 * 65.32971 * 11 10 9 29 29 H 1.08996 * 109.46274 * 301.36061 * 12 11 10 30 30 H 1.09003 * 109.46629 * 54.97262 * 13 12 11 31 31 H 1.09001 * 109.46928 * 294.97755 * 13 12 11 32 32 H 0.96998 * 120.00093 * 359.97438 * 14 13 12 33 33 H 1.08994 * 112.84777 * 18.80288 * 18 17 15 34 34 H 1.09005 * 113.61349 * 334.65270 * 19 18 17 35 35 H 1.09001 * 113.69148 * 203.76036 * 19 18 17 36 36 H 1.08995 * 113.61322 * 139.98159 * 20 19 18 37 37 H 1.08994 * 113.61409 * 270.88542 * 20 19 18 38 38 H 1.09002 * 113.61240 * 89.11668 * 21 20 19 39 39 H 1.08994 * 113.61857 * 220.01405 * 21 20 19 40 40 H 1.09003 * 109.49715 * 58.57441 * 22 12 11 41 41 H 1.09001 * 109.50064 * 178.67274 * 22 12 11 42 42 H 1.09001 * 109.59133 * 246.20422 * 23 9 7 43 43 H 1.09007 * 109.58677 * 6.48584 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2718 9 7 1.3700 -2.3622 0.3464 10 6 0.2260 -2.3398 1.2680 11 6 0.4974 -3.3188 2.4147 12 6 0.8118 -4.7005 1.8367 13 6 1.0495 -5.6892 2.9800 14 7 1.2318 -7.0353 2.4315 15 6 1.4561 -8.0754 3.2587 16 8 1.5076 -7.8965 4.4595 17 8 1.6232 -9.3126 2.7548 18 6 1.8615 -10.3847 3.7045 19 6 1.3367 -11.7518 3.2349 20 6 2.7089 -11.9634 2.5737 21 6 3.2745 -10.9852 3.6168 22 6 2.0673 -4.6170 0.9657 23 6 1.8136 -3.6529 -0.1976 24 1 -0.4850 0.8401 -0.0004 25 1 -0.6772 -2.6404 0.7369 26 1 0.0966 -1.3344 1.6688 27 1 -0.3833 -3.3836 3.0538 28 1 1.3469 -2.9675 3.0003 29 1 -0.0282 -5.0407 1.2312 30 1 0.1898 -5.6832 3.6501 31 1 1.9428 -5.3979 3.5324 32 1 1.1904 -7.1782 1.4730 33 1 1.5592 -10.1262 4.7193 34 1 0.5147 -11.6826 2.5223 35 1 1.1330 -12.4463 4.0499 36 1 3.0906 -12.9792 2.6756 37 1 2.7629 -11.5905 1.5510 38 1 3.6012 -11.4692 4.5372 39 1 4.0170 -10.2972 3.2127 40 1 2.9021 -4.2530 1.5646 41 1 2.3044 -5.6059 0.5733 42 1 1.0400 -4.0607 -0.8483 43 1 2.7331 -3.5132 -0.7662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496508375.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:20 Heat of formation + Delta-G solvation = -48.770210 kcal Electronic energy + Delta-G solvation = -22293.530630 eV Core-core repulsion = 18953.748586 eV Total energy + Delta-G solvation = -3339.782045 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.71757 -38.83462 -37.80672 -35.67536 -34.98996 -32.87624 -30.80651 -29.74594 -27.10464 -26.04292 -25.49341 -24.05354 -22.41322 -21.76204 -20.97601 -19.76170 -19.23639 -18.61640 -16.80820 -16.61700 -16.36923 -15.64948 -15.29003 -14.89928 -14.55798 -14.27735 -13.85106 -13.52670 -13.28927 -13.14609 -12.98092 -12.77836 -12.37277 -12.35067 -11.95005 -11.38109 -11.33023 -11.26810 -11.00400 -10.75022 -10.66955 -10.62704 -10.51598 -10.36624 -10.25959 -10.20120 -9.92971 -9.58263 -9.47932 -9.13575 -8.47853 -6.67600 -5.79614 -3.21977 2.06873 2.79611 3.36875 3.45019 3.47181 3.97707 4.23260 4.30451 4.49428 4.49754 4.71716 5.02050 5.16142 5.19757 5.27289 5.35135 5.37470 5.40102 5.54977 5.57905 5.62925 5.73530 5.80034 5.83133 5.91490 6.01493 6.09882 6.29818 6.31347 6.43542 6.43980 6.58223 6.66140 6.73950 6.79760 6.96941 7.34760 7.41998 7.64992 7.79615 8.31572 8.44836 9.21117 9.84538 10.41180 11.28983 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.045218 B = 0.002822 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.074371 B = 9920.944506 C =10097.583518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.132 4.132 12 C -0.090 4.090 13 C 0.140 3.860 14 N -0.702 5.702 15 C 0.644 3.356 16 O -0.576 6.576 17 O -0.352 6.352 18 C 0.077 3.923 19 C -0.139 4.139 20 C -0.137 4.137 21 C -0.153 4.153 22 C -0.128 4.128 23 C 0.145 3.855 24 H 0.253 0.747 25 H 0.018 0.982 26 H 0.088 0.912 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.407 0.593 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.017 0.983 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.454 -21.038 5.556 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.046 3.954 11 C -0.172 4.172 12 C -0.109 4.109 13 C 0.018 3.982 14 N -0.361 5.361 15 C 0.396 3.604 16 O -0.465 6.465 17 O -0.266 6.266 18 C 0.021 3.979 19 C -0.176 4.176 20 C -0.174 4.174 21 C -0.191 4.191 22 C -0.168 4.168 23 C 0.019 3.981 24 H 0.063 0.937 25 H 0.036 0.964 26 H 0.107 0.893 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.242 0.758 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.393 -20.849 6.156 21.870 hybrid contribution 0.371 0.806 -0.349 0.954 sum 2.765 -20.042 5.807 21.049 Atomic orbital electron populations 1.70037 1.05263 1.25390 1.54087 1.25051 0.95296 0.98430 1.00941 0.86236 0.79381 0.83969 0.77271 1.20268 1.21748 1.21549 1.19228 0.92557 0.84833 1.41480 0.91695 1.44064 1.35902 1.01541 1.50050 1.20765 0.88632 0.98147 0.87877 1.22187 1.00468 0.94385 1.00170 1.21344 0.99028 0.95229 0.95332 1.21652 1.01870 0.77868 0.96798 1.44851 1.75121 1.06025 1.10067 1.18184 0.76557 0.80989 0.84636 1.90973 1.56936 1.84597 1.13958 1.86231 1.84421 1.15849 1.40138 1.23555 0.97324 0.84198 0.92852 1.23198 0.98515 0.94366 1.01520 1.22876 0.95818 0.99574 0.99155 1.23368 0.96467 0.98844 1.00416 1.22092 0.96932 0.98860 0.98886 1.20890 0.97587 0.86983 0.92672 0.93686 0.96395 0.89338 0.92935 0.92275 0.91036 0.91432 0.91262 0.75774 0.88260 0.90225 0.88265 0.91142 0.89584 0.88555 0.90522 0.92073 0.93356 0.96552 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.01 11.19 55.49 0.62 -25.39 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.25 -6.83 9.58 -15.06 -0.14 -6.98 16 8 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 9 N -0.59 -14.54 2.99 -172.31 -0.52 -15.06 16 10 C 0.17 3.97 5.30 -3.71 -0.02 3.95 16 11 C -0.13 -2.39 5.36 -26.61 -0.14 -2.53 16 12 C -0.09 -1.39 2.19 -90.58 -0.20 -1.59 16 13 C 0.14 1.97 5.06 -4.04 -0.02 1.95 16 14 N -0.70 -9.12 5.27 -65.28 -0.34 -9.47 16 15 C 0.64 9.33 8.75 54.05 0.47 9.81 16 16 O -0.58 -10.00 15.56 -19.28 -0.30 -10.30 16 17 O -0.35 -4.41 10.22 -40.30 -0.41 -4.82 16 18 C 0.08 0.79 4.31 -25.92 -0.11 0.68 16 19 C -0.14 -1.03 7.92 -25.92 -0.21 -1.24 16 20 C -0.14 -0.98 8.03 -25.92 -0.21 -1.19 16 21 C -0.15 -1.28 7.92 -25.92 -0.21 -1.48 16 22 C -0.13 -2.08 5.25 -26.61 -0.14 -2.22 16 23 C 0.15 2.93 6.52 -3.71 -0.02 2.90 16 24 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.09 2.32 6.07 -51.93 -0.31 2.00 16 27 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.41 4.55 7.76 -40.82 -0.32 4.23 16 33 H 0.10 1.12 7.07 -51.93 -0.37 0.75 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.66 7.15 -51.93 -0.37 0.29 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 LS Contribution 343.42 15.07 5.18 5.18 Total: -1.00 -30.99 343.42 -9.09 -40.07 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -7.25 Total: 1.22 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -1.03 Total: 2.01 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.24 Total: -49.91 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.71 Total: -15.12 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.99 -9.09 -40.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496508375.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.698 kcal (2) G-P(sol) polarization free energy of solvation -30.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds