Wall clock time and date at job start Tue Mar 31 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99772 * 2 1 4 4 H 1.48495 * 109.47178 * 239.99960 * 3 2 1 5 5 H 1.48507 * 109.47081 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47169 * 119.99665 * 3 2 1 7 7 C 1.37874 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00231 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99878 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.46979 * 178.45992 * 9 7 2 11 11 C 1.46845 * 110.99226 * 300.30698 * 10 9 7 12 12 C 1.53044 * 109.51334 * 185.85000 * 11 10 9 13 13 C 1.53116 * 109.27864 * 300.81306 * 12 11 10 14 14 C 1.53130 * 109.16031 * 57.65453 * 13 12 11 15 15 C 1.46850 * 111.00050 * 64.51023 * 10 9 7 16 16 H 1.08994 * 109.46300 * 294.16653 * 15 10 9 17 17 C 1.53002 * 109.45912 * 54.14418 * 15 10 9 18 18 O 1.45204 * 109.47281 * 63.97494 * 17 15 10 19 19 C 1.34641 * 116.99778 * 179.97438 * 18 17 15 20 20 O 1.21503 * 120.00330 * 0.02562 * 19 18 17 21 21 N 1.34775 * 119.99737 * 180.02562 * 19 18 17 22 22 C 1.46501 * 120.00192 * 180.02562 * 21 19 18 23 23 C 1.52993 * 117.49987 * 223.62058 * 22 21 19 24 24 C 1.52995 * 117.50097 * 154.99676 * 22 21 19 25 25 H 0.96996 * 120.00604 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47264 * 58.46321 * 9 7 2 27 27 H 1.09000 * 109.47646 * 298.46052 * 9 7 2 28 28 H 1.08994 * 109.47146 * 65.83507 * 11 10 9 29 29 H 1.09001 * 109.46489 * 305.86005 * 11 10 9 30 30 H 1.08998 * 109.50327 * 180.87581 * 12 11 10 31 31 H 1.09002 * 109.50460 * 60.75526 * 12 11 10 32 32 H 1.09003 * 109.52856 * 297.75548 * 13 12 11 33 33 H 1.08997 * 109.52626 * 177.55677 * 13 12 11 34 34 H 1.08997 * 109.50054 * 182.40107 * 14 13 12 35 35 H 1.09003 * 109.52744 * 62.30727 * 14 13 12 36 36 H 1.08999 * 109.47133 * 183.97731 * 17 15 10 37 37 H 1.09003 * 109.47297 * 303.97428 * 17 15 10 38 38 H 0.97006 * 120.00157 * 359.97438 * 21 19 18 39 39 H 1.08998 * 115.54555 * 9.32876 * 22 21 19 40 40 H 1.09000 * 117.50074 * 0.02562 * 23 22 21 41 41 H 1.08999 * 117.50163 * 145.01557 * 23 22 21 42 42 H 1.08997 * 117.50043 * 214.97844 * 24 22 21 43 43 H 1.09005 * 117.49735 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2054 -3.6154 -0.0361 11 6 3.0458 -3.5498 -1.2385 12 6 3.9235 -4.8010 -1.3175 13 6 4.7991 -4.8844 -0.0642 14 6 3.9010 -4.9022 1.1760 15 6 3.0240 -3.6482 1.1827 16 1 3.6576 -2.7621 1.2186 17 6 2.1104 -3.6716 2.4098 18 8 1.3328 -4.8979 2.4110 19 6 0.4732 -5.0756 3.4319 20 8 0.3751 -4.2290 4.2979 21 7 -0.2785 -6.1925 3.4933 22 6 -1.2142 -6.3857 4.6038 23 6 -1.2632 -7.7699 5.2537 24 6 -2.4162 -7.3014 4.3638 25 1 -0.4851 0.8400 -0.0004 26 1 0.6043 -2.5452 -0.8756 27 1 0.6450 -2.5688 0.9037 28 1 3.6794 -2.6642 -1.1911 29 1 2.4109 -3.4951 -2.1228 30 1 4.5584 -4.7449 -2.2018 31 1 3.2906 -5.6863 -1.3789 32 1 5.4597 -4.0184 -0.0229 33 1 5.3945 -5.7968 -0.0958 34 1 4.5198 -4.9185 2.0731 35 1 3.2677 -5.7892 1.1545 36 1 2.7162 -3.6247 3.3147 37 1 1.4374 -2.8147 2.3782 38 1 -0.2005 -6.8683 2.8017 39 1 -1.3619 -5.5204 5.2500 40 1 -0.5989 -8.5367 4.8553 41 1 -1.4429 -7.8155 6.3278 42 1 -3.3544 -7.0389 4.8524 43 1 -2.5105 -7.7606 3.3796 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497265380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:04 Heat of formation + Delta-G solvation = -57.949911 kcal Electronic energy + Delta-G solvation = -23127.939516 eV Core-core repulsion = 19787.759410 eV Total energy + Delta-G solvation = -3340.180106 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.13267 -38.63624 -37.52632 -35.60533 -33.66914 -32.84122 -31.82498 -31.07511 -26.94992 -26.00987 -23.75178 -22.87848 -22.57387 -21.66441 -20.90894 -20.50143 -19.03566 -18.35749 -16.82197 -16.24413 -16.09274 -15.46867 -15.01589 -14.78142 -14.47807 -14.26800 -13.85859 -13.39463 -13.18594 -12.86761 -12.70892 -12.48877 -12.33191 -11.77846 -11.72173 -11.39695 -11.28086 -11.09524 -10.96393 -10.70313 -10.58416 -10.54704 -10.40337 -10.25817 -10.16488 -9.92543 -9.80391 -9.70485 -9.24454 -8.81232 -8.41225 -7.14930 -6.02333 -4.13031 2.41817 3.07162 3.28349 3.33945 3.35442 3.80665 4.39926 4.40429 4.61479 4.77727 4.84463 4.89702 5.25619 5.27371 5.29971 5.41125 5.42853 5.59986 5.72356 5.76155 5.78963 5.87401 5.88337 6.03453 6.12398 6.28010 6.32072 6.36716 6.42878 6.47267 6.50496 6.68945 6.74786 6.88824 6.93922 7.28137 7.53417 7.58443 7.90598 8.06280 8.28116 8.30554 8.67013 8.97636 9.54499 11.02067 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014455 B = 0.005126 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.634837 B = 5461.469561 C = 6754.719647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.554 4.554 8 H 0.056 0.944 9 C 0.183 3.817 10 N -0.529 5.529 11 C 0.065 3.935 12 C -0.117 4.117 13 C -0.117 4.117 14 C -0.111 4.111 15 C 0.095 3.905 16 H 0.066 0.934 17 C 0.096 3.904 18 O -0.347 6.347 19 C 0.649 3.351 20 O -0.575 6.575 21 N -0.687 5.687 22 C 0.101 3.899 23 C -0.196 4.196 24 C -0.189 4.189 25 H 0.263 0.737 26 H 0.032 0.968 27 H 0.034 0.966 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.406 0.594 39 H 0.140 0.860 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 -15.058 5.218 16.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.593 4.593 8 H 0.074 0.926 9 C 0.057 3.943 10 N -0.254 5.254 11 C -0.064 4.064 12 C -0.155 4.155 13 C -0.155 4.155 14 C -0.149 4.149 15 C -0.014 4.014 16 H 0.084 0.916 17 C 0.022 3.978 18 O -0.260 6.260 19 C 0.403 3.597 20 O -0.465 6.465 21 N -0.345 5.345 22 C -0.004 4.004 23 C -0.235 4.235 24 C -0.228 4.228 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.241 0.759 39 H 0.158 0.842 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.555 -14.862 5.567 15.946 hybrid contribution 0.878 1.602 -0.266 1.846 sum 2.433 -13.260 5.300 14.486 Atomic orbital electron populations 1.69929 1.06016 1.26993 1.49660 1.24949 0.94723 0.99077 0.94806 0.86738 0.79743 0.83441 0.78600 1.20285 1.21183 1.20221 1.21704 0.93204 0.92126 1.52289 0.92600 1.19839 0.90984 0.85328 0.98118 1.62465 1.16689 1.46436 0.99806 1.21847 0.95172 0.95405 0.93945 1.21634 0.97735 0.99510 0.96620 1.21540 0.97625 1.00739 0.95571 1.21597 0.97266 0.99104 0.96887 1.21537 0.92826 0.97052 0.90015 0.91614 1.23290 0.93109 0.83728 0.97723 1.86302 1.50702 1.44196 1.44778 1.18161 0.78725 0.81922 0.80905 1.90971 1.70455 1.43742 1.41292 1.43882 1.41792 1.20952 1.27841 1.21463 0.92232 0.95429 0.91322 1.23475 1.01881 0.98418 0.99691 1.23421 0.93887 1.03726 1.01716 0.92701 0.94998 0.94827 0.94433 0.91651 0.92714 0.91839 0.92634 0.92767 0.92717 0.90914 0.92089 0.88997 0.75852 0.84198 0.88430 0.87956 0.87719 0.88242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.55 -14.95 7.73 -34.44 -0.27 -15.22 16 8 H 0.06 1.48 5.84 -52.48 -0.31 1.18 16 9 C 0.18 4.66 4.72 -4.98 -0.02 4.63 16 10 N -0.53 -11.13 4.63 -228.12 -1.06 -12.19 16 11 C 0.06 1.24 5.04 -3.83 -0.02 1.22 16 12 C -0.12 -1.78 6.09 -26.65 -0.16 -1.95 16 13 C -0.12 -1.67 6.00 -26.60 -0.16 -1.83 16 14 C -0.11 -1.72 5.20 -26.65 -0.14 -1.86 16 15 C 0.09 1.80 1.88 -67.72 -0.13 1.68 16 16 H 0.07 1.35 6.90 -51.93 -0.36 0.99 16 17 C 0.10 1.88 4.69 37.16 0.17 2.06 16 18 O -0.35 -6.43 9.36 -40.33 -0.38 -6.81 16 19 C 0.65 11.68 8.75 54.05 0.47 12.15 16 20 O -0.58 -12.16 15.70 -19.27 -0.30 -12.46 16 21 N -0.69 -9.27 5.57 -58.74 -0.33 -9.60 16 22 C 0.10 1.16 6.43 -67.94 -0.44 0.72 16 23 C -0.20 -1.64 10.46 -26.74 -0.28 -1.92 16 24 C -0.19 -1.61 10.45 -26.74 -0.28 -1.89 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.03 0.93 5.86 -51.93 -0.30 0.63 16 28 H 0.04 0.78 6.68 -51.93 -0.35 0.43 16 29 H 0.06 1.28 8.12 -51.93 -0.42 0.86 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.15 7.55 -51.93 -0.39 0.76 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.09 2.14 5.99 -51.93 -0.31 1.82 16 38 H 0.41 4.52 8.94 -40.82 -0.36 4.16 16 39 H 0.14 1.81 7.40 -51.93 -0.38 1.42 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 343.46 15.07 5.18 5.18 Total: -1.00 -31.09 343.46 -9.49 -40.58 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.98 Total: 4.76 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -1.34 Total: -0.39 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.65 Total: -47.24 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.68 Total: -19.26 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.09 -9.49 -40.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497265380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.372 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds