Wall clock time and date at job start Tue Mar 31 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99819 * 2 1 4 4 H 1.48499 * 109.47522 * 274.24288 * 3 2 1 5 5 H 1.48507 * 109.47256 * 34.24543 * 3 2 1 6 6 H 1.48507 * 109.46899 * 154.24341 * 3 2 1 7 7 C 1.37876 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99722 * 352.90883 * 7 2 1 9 9 C 1.50704 * 120.00263 * 173.19361 * 7 2 1 10 10 C 1.52998 * 115.54563 * 301.36461 * 9 7 2 11 11 N 1.46498 * 109.47310 * 294.79303 * 10 9 7 12 12 C 1.34778 * 119.99663 * 184.70876 * 11 10 9 13 13 O 1.21584 * 120.00258 * 4.73664 * 12 11 10 14 14 N 1.34779 * 119.99537 * 184.72934 * 12 11 10 15 15 C 1.46498 * 119.99961 * 184.68371 * 14 12 11 16 16 C 1.53003 * 109.47267 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.47042 * 180.02562 * 16 15 14 18 18 C 1.53784 * 113.61540 * 274.13663 * 17 16 15 19 19 C 1.53955 * 87.01989 * 220.04708 * 18 17 16 20 20 O 1.42896 * 113.74189 * 139.94312 * 19 18 17 21 21 C 1.53783 * 113.61477 * 176.52836 * 17 16 15 22 22 C 1.53001 * 117.50059 * 155.69605 * 9 7 2 23 23 C 1.53001 * 117.49864 * 87.03551 * 9 7 2 24 24 H 0.97001 * 120.00265 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47282 * 54.79452 * 10 9 7 26 26 H 1.09003 * 109.46587 * 174.78768 * 10 9 7 27 27 H 0.96995 * 119.99834 * 4.70303 * 11 10 9 28 28 H 0.97001 * 120.00031 * 4.69283 * 14 12 11 29 29 H 1.08997 * 109.47217 * 300.00835 * 15 14 12 30 30 H 1.08999 * 109.46843 * 60.00666 * 15 14 12 31 31 H 1.08995 * 109.46950 * 300.00257 * 16 15 14 32 32 H 1.08999 * 109.46888 * 60.00397 * 16 15 14 33 33 H 1.09001 * 112.84955 * 45.33505 * 17 16 15 34 34 H 1.09002 * 113.61490 * 334.56896 * 18 17 16 35 35 H 1.09000 * 113.61262 * 105.47432 * 18 17 16 36 36 H 1.08999 * 113.54088 * 270.81674 * 19 18 17 37 37 H 0.96698 * 114.00218 * 82.40372 * 20 19 18 38 38 H 1.08993 * 113.61815 * 254.53501 * 21 17 16 39 39 H 1.08999 * 113.61181 * 25.43367 * 21 17 16 40 40 H 1.09000 * 117.49568 * 0.02562 * 22 9 7 41 41 H 1.08993 * 117.49839 * 145.01790 * 22 9 7 42 42 H 1.08999 * 117.49851 * 214.98167 * 23 9 7 43 43 H 1.08997 * 117.49732 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4069 2.0983 -1.3962 5 1 1.4942 2.6252 0.7879 6 1 3.5886 1.4159 0.6084 7 6 2.0045 -1.1940 -0.0005 8 1 1.4707 -2.1258 0.1145 9 6 3.5036 -1.1985 -0.1552 10 6 4.0367 -0.5526 -1.4356 11 7 3.6011 -1.3348 -2.5952 12 6 4.0323 -1.0074 -3.8294 13 8 4.8494 -0.1184 -3.9719 14 7 3.5579 -1.6656 -4.9056 15 6 4.1009 -1.3813 -6.2362 16 6 3.3945 -2.2569 -7.2731 17 6 3.9621 -1.9604 -8.6626 18 6 3.2831 -0.7726 -9.3648 19 6 3.3604 -1.5987 -10.6616 20 8 2.1943 -1.4938 -11.4809 21 6 3.3764 -2.8518 -9.7704 22 6 4.2674 -2.4025 0.3997 23 6 4.3452 -1.0509 1.1140 24 1 -0.4850 0.8400 0.0004 25 1 3.6515 0.4637 -1.5175 26 1 5.1259 -0.5268 -1.4031 27 1 3.0024 -2.0884 -2.4746 28 1 2.8569 -2.3275 -4.7991 29 1 3.9394 -0.3307 -6.4776 30 1 5.1695 -1.5962 -6.2460 31 1 3.5558 -3.3075 -7.0318 32 1 2.3261 -2.0416 -7.2631 33 1 5.0509 -1.9096 -8.6731 34 1 2.2641 -0.5885 -9.0243 35 1 3.8937 0.1302 -9.3842 36 1 4.2846 -1.4479 -11.2195 37 1 2.1784 -0.7076 -12.0437 38 1 4.0619 -3.6252 -10.1167 39 1 2.3829 -3.2373 -9.5411 40 1 3.6856 -3.1915 0.8762 41 1 5.1500 -2.7342 -0.1472 42 1 5.2789 -0.4939 1.0367 43 1 3.8146 -0.9500 2.0607 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000559341867.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:39 Heat of formation + Delta-G solvation = -44.887887 kcal Electronic energy + Delta-G solvation = -21894.413255 eV Core-core repulsion = 18554.799560 eV Total energy + Delta-G solvation = -3339.613694 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.86763 -39.33150 -37.14486 -35.91752 -34.44358 -33.32780 -32.19983 -30.44877 -26.82880 -26.05826 -25.29529 -24.07930 -21.76662 -21.57255 -20.43439 -19.75835 -19.27040 -17.94632 -17.52954 -16.63482 -15.94088 -15.69188 -15.36145 -15.07538 -14.71971 -14.33297 -14.00393 -13.96442 -13.37866 -13.19024 -12.89654 -12.73379 -12.45129 -12.32021 -12.11303 -11.90224 -11.61123 -11.19971 -11.04742 -10.95684 -10.66542 -10.55571 -10.49433 -10.23254 -10.06889 -9.78783 -9.48919 -9.18706 -8.89849 -8.78546 -8.49008 -8.09594 -6.18661 -4.20034 3.14696 3.30774 3.39904 3.45612 3.72510 3.88172 4.20014 4.29545 4.38755 4.44770 4.57574 4.66254 4.90020 4.99218 5.17430 5.19705 5.23299 5.32417 5.43859 5.49117 5.56474 5.66515 5.69908 5.81567 5.95159 5.97747 6.03864 6.15944 6.17088 6.27840 6.46003 6.51770 6.71767 6.77754 6.94033 7.08991 7.23020 7.31753 7.47011 7.67470 8.40870 8.59368 8.83304 9.12797 9.45484 10.92302 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024303 B = 0.003144 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.841971 B = 8903.696232 C = 9323.649376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.083 3.917 3 Si 0.870 3.130 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.252 1.252 7 C -0.490 4.490 8 H 0.078 0.922 9 C -0.016 4.016 10 C 0.172 3.828 11 N -0.719 5.719 12 C 0.699 3.301 13 O -0.607 6.607 14 N -0.753 5.753 15 C 0.142 3.858 16 C -0.119 4.119 17 C -0.105 4.105 18 C -0.166 4.166 19 C 0.073 3.927 20 O -0.562 6.562 21 C -0.124 4.124 22 C -0.180 4.180 23 C -0.189 4.189 24 H 0.266 0.734 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.403 0.597 28 H 0.396 0.604 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.377 0.623 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.216 -4.838 -18.111 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.120 4.120 3 Si 0.698 3.302 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.176 1.176 7 C -0.526 4.526 8 H 0.096 0.904 9 C -0.017 4.017 10 C 0.048 3.952 11 N -0.372 5.372 12 C 0.399 3.601 13 O -0.487 6.487 14 N -0.410 5.410 15 C 0.018 3.982 16 C -0.157 4.157 17 C -0.124 4.124 18 C -0.204 4.204 19 C 0.014 3.986 20 O -0.367 6.367 21 C -0.161 4.161 22 C -0.218 4.218 23 C -0.227 4.227 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.238 0.762 28 H 0.230 0.770 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.224 0.776 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.654 -4.452 -17.911 19.980 hybrid contribution -0.106 0.902 -0.105 0.914 sum 7.548 -3.550 -18.016 19.853 Atomic orbital electron populations 1.69891 1.06386 1.27297 1.49251 1.24908 0.94511 0.99094 0.93502 0.87003 0.81291 0.83549 0.78317 1.20418 1.21990 1.17568 1.20253 0.86775 0.94640 1.50979 0.90419 1.19604 0.94708 0.97840 0.89559 1.20932 0.96596 0.93909 0.83774 1.44990 1.52213 1.35557 1.04472 1.16021 0.81453 0.81848 0.80768 1.90857 1.37947 1.34144 1.85728 1.45086 1.43782 1.45966 1.06166 1.21070 0.97465 0.99417 0.80273 1.21744 1.00547 1.00242 0.93177 1.22228 1.00190 0.96704 0.93236 1.23810 1.02080 0.97700 0.96801 1.23410 0.88141 0.97648 0.89419 1.86530 1.42678 1.48768 1.58731 1.23114 1.02250 0.96033 0.94726 1.22771 1.01777 0.91864 1.05342 1.23062 1.01235 0.99758 0.98646 0.92458 0.92981 0.93314 0.76238 0.77038 0.91920 0.92134 0.90946 0.90909 0.88625 0.89034 0.91143 0.90229 0.77602 0.90872 0.89040 0.89699 0.90877 0.91117 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 2 C 0.08 2.32 5.46 -17.82 -0.10 2.22 16 3 Si 0.87 21.70 24.69 -169.99 -4.20 17.50 16 4 H -0.28 -7.12 6.96 56.52 0.39 -6.73 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.25 -5.95 6.12 56.52 0.35 -5.60 16 7 C -0.49 -12.88 9.19 -34.44 -0.32 -13.20 16 8 H 0.08 2.20 8.06 -52.48 -0.42 1.78 16 9 C -0.02 -0.35 0.85 -155.66 -0.13 -0.49 16 10 C 0.17 3.80 5.08 -4.04 -0.02 3.78 16 11 N -0.72 -14.25 5.48 -65.23 -0.36 -14.61 16 12 C 0.70 13.63 8.55 -86.92 -0.74 12.88 16 13 O -0.61 -14.03 16.33 5.29 0.09 -13.94 16 14 N -0.75 -10.97 5.56 -65.23 -0.36 -11.33 16 15 C 0.14 1.75 5.68 -4.04 -0.02 1.72 16 16 C -0.12 -1.06 5.15 -26.73 -0.14 -1.19 16 17 C -0.10 -0.81 3.64 -89.81 -0.33 -1.14 16 18 C -0.17 -1.33 7.48 -25.83 -0.19 -1.53 16 19 C 0.07 0.54 5.21 -25.83 -0.13 0.41 16 20 O -0.56 -4.75 13.68 -35.23 -0.48 -5.23 16 21 C -0.12 -0.95 7.48 -25.92 -0.19 -1.14 16 22 C -0.18 -3.49 9.96 -26.69 -0.27 -3.75 16 23 C -0.19 -3.88 8.70 -26.69 -0.23 -4.11 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.05 1.28 4.25 -51.93 -0.22 1.06 16 26 H 0.05 1.05 8.06 -51.93 -0.42 0.63 16 27 H 0.40 7.38 8.36 -40.82 -0.34 7.04 16 28 H 0.40 4.78 8.50 -40.82 -0.35 4.44 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.66 7.88 -51.93 -0.41 0.26 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.83 7.92 -51.93 -0.41 0.42 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.38 1.60 9.12 45.56 0.42 2.02 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 350.41 15.07 5.28 5.28 Total: -1.00 -33.17 350.41 -8.50 -41.67 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -6.42 Total: 11.70 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -2.82 Total: -5.53 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.05 Total: -51.44 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.40 Total: -19.18 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.20 Total: 17.50 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.17 -8.50 -41.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559341867.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.220 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds