Wall clock time and date at job start Tue Mar 31 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99725 * 2 1 4 4 H 1.48500 * 109.47369 * 270.00306 * 3 2 1 5 5 H 1.48501 * 109.47091 * 30.00032 * 3 2 1 6 6 H 1.48499 * 109.47242 * 150.00076 * 3 2 1 7 7 C 1.37876 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99732 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00135 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47154 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47389 * 179.97438 * 10 9 7 12 12 C 1.34778 * 120.00263 * 180.02562 * 11 10 9 13 13 O 1.21587 * 119.99588 * 5.09862 * 12 11 10 14 14 N 1.34774 * 119.99986 * 185.10455 * 12 11 10 15 15 C 1.47151 * 120.98199 * 5.62681 * 14 12 11 16 16 C 1.53289 * 108.38423 * 230.55905 * 15 14 12 17 17 O 1.42966 * 109.22293 * 307.69769 * 16 15 14 18 18 C 1.42958 * 114.16465 * 62.58576 * 17 16 15 19 19 C 1.47155 * 120.97885 * 185.65205 * 14 12 11 20 20 H 1.08996 * 109.67689 * 249.16113 * 19 14 12 21 21 C 1.52994 * 109.68249 * 9.71943 * 19 14 12 22 22 C 1.53778 * 113.61446 * 271.17704 * 21 19 14 23 23 C 1.53961 * 87.02323 * 220.04828 * 22 21 19 24 24 C 1.53780 * 113.61481 * 173.56978 * 21 19 14 25 25 H 0.97003 * 120.00770 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47357 * 60.00168 * 9 7 2 27 27 H 1.08999 * 109.47173 * 299.99662 * 9 7 2 28 28 H 1.09001 * 109.47616 * 59.99398 * 10 9 7 29 29 H 1.09000 * 109.47201 * 299.99750 * 10 9 7 30 30 H 0.96996 * 119.99332 * 359.97438 * 11 10 9 31 31 H 1.08994 * 109.68331 * 350.28399 * 15 14 12 32 32 H 1.09000 * 109.67842 * 110.83373 * 15 14 12 33 33 H 1.09000 * 109.51438 * 67.62416 * 16 15 14 34 34 H 1.09001 * 109.51800 * 187.72538 * 16 15 14 35 35 H 1.09004 * 109.51598 * 177.49471 * 18 17 16 36 36 H 1.08997 * 109.51575 * 57.33985 * 18 17 16 37 37 H 1.08997 * 112.85309 * 42.37313 * 21 19 14 38 38 H 1.09000 * 113.61320 * 334.56767 * 22 21 19 39 39 H 1.09003 * 113.61348 * 105.47320 * 22 21 19 40 40 H 1.08995 * 113.53633 * 270.81574 * 23 22 21 41 41 H 1.08993 * 113.66605 * 139.92902 * 23 22 21 42 42 H 1.09004 * 113.61789 * 254.53076 * 24 21 19 43 43 H 1.09002 * 113.61538 * 25.34658 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5129 -4.9308 0.0001 12 6 2.1869 -6.0980 0.0007 13 8 3.3991 -6.0999 0.0944 14 7 1.5170 -7.2629 -0.1026 15 6 0.0650 -7.2833 -0.3400 16 6 -0.5817 -8.2080 0.6975 17 8 0.0826 -9.4739 0.6788 18 6 1.4646 -9.4149 1.0395 19 6 2.2162 -8.5520 0.0194 20 1 2.2300 -9.0550 -0.9475 21 6 3.6497 -8.3174 0.4996 22 6 4.6524 -8.0874 -0.6434 23 6 5.6422 -8.9522 0.1584 24 6 4.4159 -9.6144 0.8088 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8721 -3.6043 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 0.5430 -4.9308 0.0008 31 1 -0.3382 -6.2760 -0.2360 32 1 -0.1377 -7.6585 -1.3432 33 1 -0.4902 -7.7635 1.6886 34 1 -1.6357 -8.3455 0.4561 35 1 1.8832 -10.4214 1.0435 36 1 1.5635 -8.9748 2.0318 37 1 3.7138 -7.5727 1.2930 38 1 4.3472 -8.5360 -1.5888 39 1 4.9646 -7.0483 -0.7479 40 1 6.2520 -8.3806 0.8580 41 1 6.2292 -9.6319 -0.4591 42 1 4.5374 -9.8063 1.8749 43 1 4.0450 -10.4815 0.2623 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564896984.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:41 Heat of formation + Delta-G solvation = -39.521048 kcal Electronic energy + Delta-G solvation = -23158.774311 eV Core-core repulsion = 19819.393340 eV Total energy + Delta-G solvation = -3339.380971 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.85661 -38.40993 -38.16407 -34.89948 -34.60211 -32.86427 -31.61526 -29.64181 -27.85092 -25.88690 -25.15772 -24.61892 -23.02529 -22.08228 -20.86949 -19.69116 -19.39251 -17.84124 -16.62544 -16.36569 -15.94088 -15.67141 -15.49555 -15.12120 -15.04421 -14.50405 -14.19782 -14.05821 -13.81505 -13.07895 -12.90616 -12.67400 -12.37661 -12.27659 -12.09243 -11.73223 -11.37824 -11.29308 -11.09551 -11.05191 -10.63550 -10.51426 -10.41890 -10.26179 -10.05613 -9.93549 -9.64734 -9.36262 -9.05157 -8.58428 -8.45501 -8.17300 -6.10540 -4.13211 2.75972 3.28722 3.34978 3.39278 3.52443 3.60990 4.16995 4.42265 4.49766 4.69918 4.78280 4.81273 4.87984 4.98988 5.01254 5.07170 5.26734 5.28544 5.32327 5.44697 5.56289 5.60829 5.70068 5.75191 5.82027 5.92503 6.07850 6.23406 6.35709 6.38240 6.47354 6.61807 6.75804 6.78897 6.89030 7.03719 7.14633 7.54011 7.61246 7.88435 8.23303 8.35953 8.91589 8.99642 9.51708 11.01153 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021857 B = 0.003895 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.726937 B = 7186.872079 C = 8285.843841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.141 3.859 11 N -0.740 5.740 12 C 0.701 3.299 13 O -0.577 6.577 14 N -0.636 5.636 15 C 0.077 3.923 16 C 0.047 3.953 17 O -0.382 6.382 18 C 0.052 3.948 19 C 0.142 3.858 20 H 0.073 0.927 21 C -0.085 4.085 22 C -0.116 4.116 23 C -0.143 4.143 24 C -0.149 4.149 25 H 0.262 0.738 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.390 0.610 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.056 0.944 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.112 -20.178 0.875 20.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.018 3.982 11 N -0.396 5.396 12 C 0.403 3.597 13 O -0.456 6.456 14 N -0.376 5.376 15 C -0.047 4.047 16 C -0.031 4.031 17 O -0.300 6.300 18 C -0.026 4.026 19 C 0.038 3.962 20 H 0.091 0.909 21 C -0.104 4.104 22 C -0.154 4.154 23 C -0.181 4.181 24 C -0.187 4.187 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.225 0.775 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.074 0.926 37 H 0.128 0.872 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.777 -20.168 0.879 20.265 hybrid contribution -0.144 1.251 -0.028 1.259 sum 1.633 -18.918 0.851 19.007 Atomic orbital electron populations 1.69951 1.06100 1.26869 1.50448 1.24989 0.94881 0.99396 0.94983 0.86515 0.79854 0.83004 0.78205 1.20558 1.21175 1.19714 1.21042 0.93248 0.90343 1.51272 0.92241 1.19317 0.94267 0.91164 0.97694 1.21572 0.95611 0.80433 1.00565 1.45789 1.09815 1.05433 1.78573 1.16004 0.85476 0.80087 0.78137 1.90883 1.11387 1.85491 1.57800 1.47368 1.07480 1.04908 1.77856 1.22302 0.81181 1.01339 0.99907 1.22991 0.97007 0.84581 0.98515 1.87941 1.22721 1.29314 1.89996 1.23069 0.81447 1.00878 0.97155 1.21787 0.92563 0.83014 0.98821 0.90902 1.22703 0.90323 0.96352 1.00984 1.22977 0.95441 1.01109 0.95838 1.22812 0.96240 0.99177 0.99822 1.23129 0.97769 0.97408 1.00420 0.92856 0.96080 0.96073 0.92750 0.92895 0.77502 0.89123 0.90672 0.92484 0.87658 0.87850 0.92593 0.87171 0.91809 0.89441 0.90511 0.92193 0.91872 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 10 C 0.14 2.98 5.62 -4.04 -0.02 2.96 16 11 N -0.74 -13.03 5.45 -65.22 -0.36 -13.38 16 12 C 0.70 11.97 8.08 -86.92 -0.70 11.27 16 13 O -0.58 -11.09 10.19 5.29 0.05 -11.04 16 14 N -0.64 -8.65 3.02 -170.44 -0.51 -9.16 16 15 C 0.08 0.83 6.65 -3.54 -0.02 0.80 16 16 C 0.05 0.45 6.98 37.31 0.26 0.71 16 17 O -0.38 -4.27 10.74 -35.23 -0.38 -4.65 16 18 C 0.05 0.54 5.85 37.31 0.22 0.76 16 19 C 0.14 1.72 2.99 -67.42 -0.20 1.52 16 20 H 0.07 0.87 7.84 -51.93 -0.41 0.47 16 21 C -0.09 -1.09 2.10 -89.81 -0.19 -1.28 16 22 C -0.12 -1.57 6.68 -25.83 -0.17 -1.74 16 23 C -0.14 -1.59 8.09 -25.82 -0.21 -1.80 16 24 C -0.15 -1.50 6.71 -25.92 -0.17 -1.68 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.39 6.06 6.01 -40.82 -0.25 5.82 16 31 H 0.09 0.93 5.65 -51.93 -0.29 0.63 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 0.88 7.49 -51.93 -0.39 0.49 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.11 1.73 6.42 -51.93 -0.33 1.40 16 38 H 0.06 0.82 7.89 -51.93 -0.41 0.41 16 39 H 0.09 1.45 6.44 -51.93 -0.33 1.11 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.66 7.89 -51.93 -0.41 0.25 16 LS Contribution 334.19 15.07 5.04 5.04 Total: -1.00 -30.63 334.19 -9.22 -39.85 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.01 Total: 3.74 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.77 Total: -1.42 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.13 Total: -47.80 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.32 Total: -15.68 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.63 -9.22 -39.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564896984.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.332 kcal (2) G-P(sol) polarization free energy of solvation -30.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds