Wall clock time and date at job start Tue Mar 31 2020 05:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99692 * 2 1 4 4 H 1.48507 * 109.46732 * 239.99396 * 3 2 1 5 5 H 1.48493 * 109.47511 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47091 * 119.99785 * 3 2 1 7 7 C 1.37874 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00194 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00039 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47264 * 179.97438 * 9 7 2 11 11 N 1.46494 * 109.47195 * 180.02562 * 10 9 7 12 12 C 1.34775 * 120.00170 * 179.97438 * 11 10 9 13 13 O 1.21592 * 120.00161 * 5.13729 * 12 11 10 14 14 N 1.34782 * 120.00297 * 185.13260 * 12 11 10 15 15 C 1.47149 * 120.98083 * 5.85298 * 14 12 11 16 16 C 1.53301 * 108.38433 * 129.48394 * 15 14 12 17 17 O 1.43050 * 109.25140 * 52.30476 * 16 15 14 18 18 C 1.42965 * 114.11266 * 297.45796 * 17 16 15 19 19 C 1.47151 * 120.98137 * 185.87581 * 14 12 11 20 20 H 1.08993 * 109.68176 * 110.79556 * 19 14 12 21 21 C 1.52997 * 109.71362 * 350.25398 * 19 14 12 22 22 C 1.53788 * 113.61685 * 284.54555 * 21 19 14 23 23 C 1.53783 * 87.08082 * 220.02003 * 22 21 19 24 24 C 1.53781 * 87.08012 * 25.43375 * 23 22 21 25 25 H 0.97004 * 119.99633 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47231 * 59.99792 * 9 7 2 27 27 H 1.09004 * 109.46954 * 300.00201 * 9 7 2 28 28 H 1.09000 * 109.47062 * 59.99815 * 10 9 7 29 29 H 1.08998 * 109.46985 * 300.00186 * 10 9 7 30 30 H 0.97003 * 120.00332 * 359.97438 * 11 10 9 31 31 H 1.08994 * 109.68395 * 249.20715 * 15 14 12 32 32 H 1.09006 * 109.68303 * 9.76481 * 15 14 12 33 33 H 1.09000 * 109.51104 * 172.22575 * 16 15 14 34 34 H 1.08998 * 109.51079 * 292.32718 * 16 15 14 35 35 H 1.08998 * 109.51313 * 302.60335 * 18 17 16 36 36 H 1.08996 * 109.51244 * 182.49403 * 18 17 16 37 37 H 1.09003 * 112.85020 * 55.85307 * 21 19 14 38 38 H 1.09001 * 113.61298 * 334.57022 * 22 21 19 39 39 H 1.09000 * 113.61135 * 105.46663 * 22 21 19 40 40 H 1.08993 * 113.61193 * 270.88601 * 23 22 21 41 41 H 1.09000 * 113.61341 * 139.98197 * 23 22 21 42 42 H 1.09004 * 113.61046 * 220.01416 * 24 23 22 43 43 H 1.09000 * 113.69345 * 89.12918 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9307 -0.0001 12 6 2.1867 -6.0979 -0.0007 13 8 3.3990 -6.1002 0.0935 14 7 1.5169 -7.2628 -0.1057 15 6 0.0657 -7.2829 -0.3486 16 6 -0.2142 -8.2212 -1.5281 17 8 0.4058 -9.4866 -1.2816 18 6 1.8305 -9.4286 -1.1778 19 6 2.2151 -8.5520 0.0197 20 1 1.9155 -9.0433 0.9454 21 6 3.7276 -8.3215 0.0248 22 6 4.3065 -7.9999 -1.3632 23 6 5.4998 -8.8935 -0.9857 24 6 4.5489 -9.6208 -0.0205 25 1 -0.4850 0.8401 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6043 -0.8894 30 1 0.5428 -4.9308 0.0000 31 1 -0.4503 -7.6463 0.5400 32 1 -0.2802 -6.2775 -0.5892 33 1 -1.2900 -8.3583 -1.6370 34 1 0.1920 -7.7881 -2.4422 35 1 2.2449 -9.0003 -2.0904 36 1 2.2264 -10.4340 -1.0350 37 1 4.0476 -7.6295 0.8039 38 1 3.7101 -8.3927 -2.1867 39 1 4.5707 -6.9505 -1.4936 40 1 6.3051 -8.3573 -0.4839 41 1 5.8529 -9.5195 -1.8052 42 1 5.0090 -9.8800 0.9331 43 1 4.0183 -10.4571 -0.4756 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564896990.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:44 Heat of formation + Delta-G solvation = -32.506811 kcal Electronic energy + Delta-G solvation = -23274.322628 eV Core-core repulsion = 19935.245818 eV Total energy + Delta-G solvation = -3339.076811 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.98759 -38.51657 -38.07174 -34.90759 -34.60685 -32.85046 -31.47885 -29.65329 -27.78147 -25.76662 -25.50822 -24.68429 -23.01075 -22.29628 -20.96117 -19.66830 -19.09914 -17.63156 -16.66022 -16.40659 -15.96493 -15.72027 -15.43181 -15.25184 -15.04750 -14.49092 -14.30216 -14.13788 -13.85578 -13.14797 -12.87736 -12.61210 -12.36879 -12.26119 -12.16623 -11.81922 -11.32527 -11.22279 -11.04220 -10.98301 -10.66289 -10.61929 -10.35971 -10.23004 -10.05783 -10.01604 -9.64021 -9.36153 -8.97575 -8.53387 -8.42733 -8.18151 -6.10303 -4.13088 2.75324 3.30545 3.34448 3.37802 3.51606 3.61140 4.18609 4.42721 4.55259 4.74498 4.75210 4.82846 4.88078 4.93491 4.97721 5.03603 5.19746 5.26827 5.28867 5.44328 5.55745 5.61253 5.71357 5.77280 5.85815 5.92909 6.07368 6.23572 6.37865 6.39222 6.41692 6.55664 6.75510 6.80616 6.89871 7.03976 7.14580 7.53770 7.61273 7.88488 8.23260 8.35625 8.91304 8.98716 9.51749 11.01321 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023609 B = 0.003857 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.714637 B = 7257.744445 C = 8185.132230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.141 3.859 11 N -0.740 5.740 12 C 0.703 3.297 13 O -0.579 6.579 14 N -0.635 5.635 15 C 0.076 3.924 16 C 0.048 3.952 17 O -0.382 6.382 18 C 0.044 3.956 19 C 0.141 3.859 20 H 0.074 0.926 21 C -0.091 4.091 22 C -0.131 4.131 23 C -0.139 4.139 24 C -0.152 4.152 25 H 0.262 0.738 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.390 0.610 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.128 0.872 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.399 -20.089 -2.155 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.018 3.982 11 N -0.395 5.395 12 C 0.405 3.595 13 O -0.457 6.457 14 N -0.374 5.374 15 C -0.048 4.048 16 C -0.029 4.029 17 O -0.300 6.300 18 C -0.034 4.034 19 C 0.037 3.963 20 H 0.092 0.908 21 C -0.109 4.109 22 C -0.168 4.168 23 C -0.177 4.177 24 C -0.190 4.190 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.225 0.775 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.146 0.854 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.043 -20.076 -2.080 20.287 hybrid contribution -0.115 1.230 -0.022 1.235 sum 1.928 -18.846 -2.102 19.061 Atomic orbital electron populations 1.69949 1.06094 1.26973 1.50350 1.24988 0.94886 0.99384 0.94971 0.86571 0.79520 0.82651 0.78790 1.20114 1.21245 1.20098 1.21004 0.93207 0.90357 1.51415 0.92297 1.19313 0.94257 0.91138 0.97702 1.21572 0.95622 0.80443 1.00564 1.45783 1.09848 1.05420 1.78463 1.15990 0.85370 0.80095 0.78033 1.90831 1.11555 1.85311 1.58046 1.47322 1.07554 1.04874 1.77681 1.22312 0.81861 1.01408 0.99235 1.22977 0.98866 0.84489 0.96610 1.87958 1.19754 1.29463 1.92843 1.23327 0.81206 1.00778 0.98046 1.21618 0.93564 0.82955 0.98131 0.90787 1.23021 0.90402 0.96207 1.01299 1.23078 0.96452 1.00983 0.96255 1.22728 0.97121 0.98806 0.99019 1.23206 0.98721 0.97265 0.99778 0.92800 0.96108 0.96038 0.92716 0.92923 0.77465 0.90726 0.89043 0.87697 0.92535 0.91812 0.87958 0.85432 0.91256 0.90193 0.90394 0.92210 0.91796 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.14 2.97 5.62 -4.05 -0.02 2.95 16 11 N -0.74 -12.99 5.41 -65.23 -0.35 -13.35 16 12 C 0.70 11.96 8.12 -86.91 -0.71 11.26 16 13 O -0.58 -11.11 10.39 5.28 0.05 -11.06 16 14 N -0.63 -8.59 3.02 -170.43 -0.51 -9.10 16 15 C 0.08 0.81 6.51 -3.53 -0.02 0.79 16 16 C 0.05 0.47 6.99 37.31 0.26 0.73 16 17 O -0.38 -4.31 10.75 -35.23 -0.38 -4.69 16 18 C 0.04 0.46 5.50 37.31 0.21 0.67 16 19 C 0.14 1.71 3.22 -67.42 -0.22 1.49 16 20 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 21 C -0.09 -1.17 2.50 -89.80 -0.22 -1.39 16 22 C -0.13 -1.71 6.53 -25.91 -0.17 -1.87 16 23 C -0.14 -1.53 8.08 -25.92 -0.21 -1.74 16 24 C -0.15 -1.54 7.45 -25.92 -0.19 -1.73 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.39 6.07 6.16 -40.82 -0.25 5.82 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.94 5.91 -51.93 -0.31 0.63 16 33 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.71 5.61 -51.93 -0.29 0.41 16 36 H 0.10 0.90 6.63 -51.93 -0.34 0.55 16 37 H 0.13 2.04 6.04 -51.94 -0.31 1.73 16 38 H 0.07 0.84 5.48 -51.93 -0.28 0.56 16 39 H 0.08 1.30 6.80 -51.93 -0.35 0.94 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.64 6.24 -51.93 -0.32 0.32 16 LS Contribution 328.36 15.07 4.95 4.95 Total: -1.00 -30.53 328.36 -9.04 -39.57 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.66 Total: 4.45 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.85 Total: -1.79 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.13 Total: -47.71 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.32 Total: -15.75 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.53 -9.04 -39.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564896990.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.063 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds