Wall clock time and date at job start Tue Mar 31 2020 06:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99771 * 2 1 4 4 H 1.48494 * 109.47043 * 270.00020 * 3 2 1 5 5 H 1.48498 * 109.46787 * 29.99911 * 3 2 1 6 6 H 1.48496 * 109.47046 * 149.99874 * 3 2 1 7 7 C 1.37876 * 120.00541 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99842 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00459 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47358 * 180.02562 * 9 7 2 11 11 C 1.53034 * 109.45994 * 175.00326 * 10 9 7 12 12 C 1.53192 * 109.31466 * 181.38532 * 11 10 9 13 13 N 1.46922 * 108.77421 * 305.36775 * 12 11 10 14 14 C 1.34784 * 120.62780 * 233.58402 * 13 12 11 15 15 O 1.21276 * 120.00051 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99728 * 179.97438 * 14 13 12 17 17 O 1.42899 * 109.46785 * 179.97438 * 16 14 13 18 18 C 1.42905 * 113.99778 * 179.97438 * 17 16 14 19 19 C 1.53931 * 113.73439 * 246.72590 * 18 17 16 20 20 N 1.47954 * 86.18314 * 221.92154 * 19 18 17 21 21 C 1.47958 * 90.76257 * 24.69268 * 20 19 18 22 22 C 1.46919 * 118.74005 * 53.85520 * 13 12 11 23 23 C 1.53040 * 109.45767 * 295.07268 * 10 9 7 24 24 H 0.96995 * 120.00496 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46703 * 60.00248 * 9 7 2 26 26 H 1.08997 * 109.47156 * 300.01023 * 9 7 2 27 27 H 1.08998 * 109.45581 * 55.02822 * 10 9 7 28 28 H 1.09003 * 109.49668 * 61.43062 * 11 10 9 29 29 H 1.09009 * 109.52502 * 301.35619 * 11 10 9 30 30 H 1.08998 * 109.58638 * 185.57341 * 12 11 10 31 31 H 1.09006 * 109.69926 * 65.22301 * 12 11 10 32 32 H 1.08997 * 109.47198 * 59.99898 * 16 14 13 33 33 H 1.08997 * 109.47040 * 299.99932 * 16 14 13 34 34 H 1.08993 * 112.93943 * 18.43571 * 18 17 16 35 35 H 1.09005 * 113.76262 * 336.24345 * 19 18 17 36 36 H 1.09006 * 113.75723 * 107.60348 * 19 18 17 37 37 H 1.00900 * 110.99940 * 137.58000 * 20 19 18 38 38 H 1.09005 * 113.76092 * 220.99282 * 21 20 19 39 39 H 1.08996 * 113.86318 * 89.63922 * 21 20 19 40 40 H 1.09006 * 109.58321 * 65.93068 * 22 13 12 41 41 H 1.09004 * 109.58929 * 186.34994 * 22 13 12 42 42 H 1.09001 * 109.49617 * 298.56081 * 23 10 9 43 43 H 1.08999 * 109.49831 * 58.66259 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0000 10 6 4.0217 -2.6364 0.0001 11 6 5.5469 -2.6379 -0.1262 12 6 6.0510 -4.0841 -0.1606 13 7 5.5429 -4.7902 1.0234 14 6 6.3862 -5.4405 1.8496 15 8 7.5768 -5.4460 1.6192 16 6 5.8495 -6.1598 3.0603 17 8 6.9302 -6.7669 3.7714 18 6 6.5277 -7.4781 4.9437 19 6 7.0269 -6.8445 6.2547 20 7 7.3209 -8.2261 6.6949 21 6 7.4387 -8.6702 5.2884 22 6 4.0974 -4.7792 1.2862 23 6 3.6157 -3.3206 1.3074 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6795 0.8895 26 1 3.8746 -0.6806 -0.8904 27 1 3.5871 -3.1753 -0.8418 28 1 5.9831 -2.1207 0.7284 29 1 5.8368 -2.1295 -1.0459 30 1 7.1410 -4.0914 -0.1507 31 1 5.6905 -4.5775 -1.0632 32 1 5.1457 -6.9293 2.7434 33 1 5.3410 -5.4477 3.7102 34 1 5.4654 -7.7219 4.9489 35 1 7.9148 -6.2241 6.1325 36 1 6.2422 -6.3569 6.8334 37 1 8.2125 -8.2738 7.1649 38 1 6.9831 -9.6414 5.0949 39 1 8.4464 -8.5847 4.8819 40 1 3.5788 -5.3268 0.4992 41 1 3.8978 -5.2455 2.2510 42 1 4.0702 -2.7970 2.1485 43 1 2.5306 -3.2984 1.4079 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567925073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:30 Heat of formation + Delta-G solvation = -53.833728 kcal Electronic energy + Delta-G solvation = -22333.315984 eV Core-core repulsion = 18993.314369 eV Total energy + Delta-G solvation = -3340.001615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.33432 -39.71481 -37.58730 -36.40771 -34.13932 -32.26821 -31.09058 -29.11076 -28.10893 -26.44020 -26.37600 -24.47889 -22.97671 -21.61081 -20.47921 -19.93728 -18.81748 -18.04682 -16.96110 -16.77989 -16.48303 -16.21715 -15.56741 -14.83723 -14.44711 -14.33648 -13.98699 -13.85174 -13.68055 -13.25745 -13.24579 -13.03629 -12.69605 -12.34619 -12.32845 -12.15669 -11.70068 -11.51503 -11.27057 -11.19667 -10.95656 -10.70790 -10.39217 -9.98847 -9.88665 -9.76872 -9.64184 -9.53544 -9.44233 -9.11520 -8.57753 -8.49017 -6.08759 -4.06451 2.58480 2.65391 3.27478 3.35683 3.39069 3.57546 3.70516 4.11041 4.41243 4.41905 4.64720 4.83283 4.92856 4.98082 5.00226 5.04792 5.23572 5.25338 5.28329 5.36250 5.36878 5.37318 5.50598 5.55839 5.60763 5.61391 5.85415 5.95290 6.21388 6.22828 6.36335 6.51638 6.73109 6.73268 6.79818 6.81866 6.90015 7.20248 7.38413 7.44189 7.75323 8.18157 8.48537 8.95336 9.54493 11.04367 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.003187 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.171179 B = 8784.128320 C = 9254.882099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.072 4.072 11 C -0.132 4.132 12 C 0.114 3.886 13 N -0.605 5.605 14 C 0.515 3.485 15 O -0.532 6.532 16 C 0.044 3.956 17 O -0.352 6.352 18 C 0.055 3.945 19 C -0.013 4.013 20 N -0.634 5.634 21 C 0.007 3.993 22 C 0.101 3.899 23 C -0.121 4.121 24 H 0.263 0.737 25 H 0.015 0.985 26 H 0.012 0.988 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.326 0.674 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.906 -14.585 8.278 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.092 0.908 9 C -0.047 4.047 10 C -0.091 4.091 11 C -0.171 4.171 12 C -0.008 4.008 13 N -0.340 5.340 14 C 0.302 3.698 15 O -0.408 6.408 16 C -0.036 4.036 17 O -0.269 6.269 18 C -0.004 4.004 19 C -0.144 4.144 20 N -0.261 5.261 21 C -0.123 4.123 22 C -0.021 4.021 23 C -0.159 4.159 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.030 0.970 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.139 0.861 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.855 -14.787 8.405 20.733 hybrid contribution 0.763 1.420 -0.271 1.634 sum 12.618 -13.367 8.134 20.101 Atomic orbital electron populations 1.69904 1.06277 1.26884 1.51232 1.25025 0.94689 0.99133 0.94636 0.86816 0.80378 0.83807 0.78493 1.20366 1.21482 1.19067 1.21125 0.89385 0.94316 1.50646 0.90840 1.19620 0.97188 0.91608 0.96276 1.21005 0.92205 0.99094 0.96788 1.22069 0.97916 0.94780 1.02285 1.21652 1.00123 0.92636 0.86347 1.48127 1.07794 1.51881 1.26219 1.20145 0.86539 0.79365 0.83762 1.90691 1.15513 1.60966 1.73642 1.22356 0.90268 0.97686 0.93285 1.88076 1.31066 1.69250 1.38480 1.24250 0.99491 0.92393 0.84236 1.24328 1.02011 0.92411 0.95606 1.66829 1.34714 1.11802 1.12708 1.24040 1.00350 0.98831 0.89120 1.22081 0.79249 0.99563 1.01197 1.21995 1.02799 0.92344 0.98719 0.92761 0.96668 0.97005 0.91652 0.92035 0.91012 0.89563 0.91528 0.90100 0.89908 0.88280 0.90377 0.88897 0.86089 0.88710 0.90320 0.90963 0.90590 0.92228 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 2 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 3 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -13.78 8.94 -34.44 -0.31 -14.08 16 8 H 0.07 2.07 7.30 -52.49 -0.38 1.69 16 9 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 10 C -0.07 -1.28 2.10 -90.58 -0.19 -1.47 16 11 C -0.13 -2.03 5.36 -26.61 -0.14 -2.17 16 12 C 0.11 1.60 6.43 -3.71 -0.02 1.57 16 13 N -0.61 -8.28 2.97 -172.50 -0.51 -8.79 16 14 C 0.52 7.49 7.78 -10.98 -0.09 7.40 16 15 O -0.53 -9.77 15.91 -14.35 -0.23 -10.00 16 16 C 0.04 0.48 4.60 36.01 0.17 0.64 16 17 O -0.35 -4.31 9.90 -55.14 -0.55 -4.85 16 18 C 0.06 0.50 4.50 -25.80 -0.12 0.39 16 19 C -0.01 -0.11 8.73 -2.77 -0.02 -0.14 16 20 N -0.63 -5.17 8.53 -117.24 -1.00 -6.17 16 21 C 0.01 0.05 8.73 -2.77 -0.02 0.03 16 22 C 0.10 1.24 6.37 -3.49 -0.02 1.22 16 23 C -0.12 -1.91 5.21 -26.39 -0.14 -2.05 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.02 0.35 7.20 -51.93 -0.37 -0.03 16 26 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 30 H 0.09 1.26 7.01 -51.93 -0.36 0.90 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.69 7.93 -51.93 -0.41 0.28 16 33 H 0.08 0.77 7.70 -51.93 -0.40 0.37 16 34 H 0.10 0.76 7.87 -51.93 -0.41 0.35 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.33 2.17 8.91 -39.29 -0.35 1.82 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.73 5.93 -51.93 -0.31 0.42 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.09 1.60 6.91 -51.93 -0.36 1.24 16 LS Contribution 341.29 15.07 5.14 5.14 Total: -1.00 -32.59 341.29 -9.29 -41.88 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -7.15 Total: -0.33 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -1.10 Total: -7.20 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: -0.74 Total: -41.20 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.77 Total: -14.85 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.59 -9.29 -41.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567925073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.957 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds