Wall clock time and date at job start Tue Mar 31 2020 05:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81396 * 102.99897 * 2 1 4 4 H 1.08999 * 109.47003 * 55.00295 * 3 2 1 5 5 C 1.52992 * 109.47568 * 295.00498 * 3 2 1 6 6 C 1.53000 * 109.47431 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47270 * 59.99472 * 6 5 3 8 8 C 1.52991 * 109.47044 * 300.00333 * 7 6 5 9 9 H 1.09001 * 109.47046 * 180.02562 * 8 7 6 10 10 N 1.46899 * 109.47146 * 299.99962 * 8 7 6 11 11 C 1.46903 * 111.00195 * 275.00360 * 10 8 7 12 12 C 1.52996 * 109.47306 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.47474 * 54.99671 * 12 11 10 14 14 C 1.47198 * 109.46960 * 294.99833 * 12 11 10 15 15 N 7.12300 * 83.91295 * 17.08726 * 2 1 3 16 16 C 1.53006 * 109.47102 * 174.99634 * 12 11 10 17 17 C 1.50698 * 109.47184 * 184.99536 * 16 12 11 18 18 H 1.08005 * 119.99819 * 0.02562 * 17 16 12 19 19 C 1.37875 * 120.00046 * 179.97438 * 17 16 12 20 20 N 1.31511 * 120.00192 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47261 * 60.00310 * 21 19 17 24 24 H 1.48500 * 109.47454 * 300.00304 * 21 19 17 25 25 C 1.52995 * 109.47196 * 174.99863 * 3 2 1 26 26 H 1.09005 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47350 * 299.99544 * 1 2 3 28 28 H 1.08994 * 109.47646 * 59.99473 * 1 2 3 29 29 H 1.09008 * 109.46577 * 299.99746 * 5 3 2 30 30 H 1.09001 * 109.47326 * 59.99470 * 5 3 2 31 31 H 1.08997 * 109.47304 * 179.97438 * 6 5 3 32 32 H 1.08999 * 109.46880 * 299.99639 * 6 5 3 33 33 H 1.09000 * 109.46731 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.47033 * 60.00260 * 7 6 5 35 35 H 1.00900 * 111.00241 * 38.95399 * 10 8 7 36 36 H 1.08995 * 109.47308 * 59.99820 * 11 10 8 37 37 H 1.09004 * 109.46623 * 299.99613 * 11 10 8 38 38 H 1.09001 * 109.47002 * 65.00132 * 16 12 11 39 39 H 1.08993 * 109.46955 * 304.99694 * 16 12 11 40 40 H 0.97001 * 119.99934 * 359.97438 * 20 19 17 41 41 H 1.09008 * 109.47047 * 60.00193 * 25 3 2 42 42 H 1.08997 * 109.47311 * 300.00551 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2540 0.8418 5 6 1.7427 2.4016 -1.3072 6 6 2.0874 3.8923 -1.3074 7 6 3.6024 4.0655 -1.1820 8 6 4.0817 3.4313 0.1252 9 1 5.1609 3.5551 0.2148 10 7 3.4182 4.0875 1.2598 11 6 4.1385 5.3039 1.6592 12 6 3.4196 5.9574 2.8411 13 1 3.3118 5.2318 3.6472 14 6 2.0882 6.4163 2.4127 15 7 1.0587 6.7702 2.0811 16 6 4.2360 7.1528 3.3369 17 6 3.5926 7.7215 4.5753 18 1 2.6918 7.2748 4.9696 19 6 4.1545 8.8115 5.2055 20 7 5.2517 9.3552 4.7257 21 14 3.3575 9.5160 6.7410 22 1 4.1497 10.6763 7.2221 23 1 3.3128 8.4740 7.7982 24 1 1.9759 9.9582 6.4232 25 6 3.7369 1.9412 0.1258 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 2.2353 1.9150 -2.1491 30 1 0.6634 2.2779 -1.3968 31 1 1.7463 4.3440 -2.2389 32 1 1.5951 4.3791 -0.4656 33 1 3.8479 5.1275 -1.1817 34 1 4.0947 3.5786 -2.0239 35 1 2.4537 4.2923 1.0456 36 1 4.1681 6.0003 0.8213 37 1 5.1559 5.0441 1.9519 38 1 4.2687 7.9174 2.5607 39 1 5.2500 6.8285 3.5705 40 1 5.6658 8.9891 3.9286 41 1 4.2295 1.4546 -0.7161 42 1 4.0783 1.4894 1.0571 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568384021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:01 Heat of formation + Delta-G solvation = -9.473147 kcal Electronic energy + Delta-G solvation = -20115.936047 eV Core-core repulsion = 17220.610922 eV Total energy + Delta-G solvation = -2895.325125 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.56386 -36.96649 -34.61932 -33.65543 -31.66545 -31.07108 -29.55402 -28.69438 -25.77920 -23.13526 -22.73569 -22.69057 -22.03079 -19.21570 -17.31179 -16.88346 -16.65858 -15.78260 -15.38935 -14.90049 -14.78254 -14.10332 -13.88732 -13.78404 -13.60925 -13.52309 -13.23702 -13.03443 -12.75431 -12.34491 -12.26130 -12.13550 -12.04709 -11.88433 -11.55297 -11.43340 -11.13033 -10.95679 -10.75418 -10.66279 -10.43468 -10.33881 -10.16792 -9.93102 -9.87571 -8.68843 -8.43150 -8.38910 -7.87440 -6.44959 -4.16196 1.50325 2.38508 3.41280 3.43694 3.44697 3.48621 3.62193 4.12532 4.38002 4.47579 4.50309 4.66314 4.71284 4.88179 4.88497 4.90556 4.95461 5.16345 5.19222 5.29172 5.33549 5.36467 5.41748 5.48291 5.57009 5.60449 5.75078 5.78454 5.83021 5.95167 6.02379 6.04259 6.11267 6.24692 6.37548 7.01502 7.08034 7.22461 7.35125 8.01286 8.25070 8.37038 8.77510 9.54898 10.95850 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.026301 B = 0.003436 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.336877 B = 8147.505787 C = 8422.164404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.272 6.272 3 C -0.046 4.046 4 H 0.094 0.906 5 C -0.113 4.113 6 C -0.119 4.119 7 C -0.153 4.153 8 C 0.092 3.908 9 H 0.088 0.912 10 N -0.686 5.686 11 C 0.066 3.934 12 C 0.013 3.987 13 H 0.112 0.888 14 C 0.240 3.760 15 N -0.474 5.474 16 C 0.020 3.980 17 C -0.607 4.607 18 H 0.050 0.950 19 C 0.021 3.979 20 N -0.908 5.908 21 Si 1.065 2.935 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.289 1.289 25 C -0.084 4.084 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.338 0.662 36 H 0.035 0.965 37 H 0.091 0.909 38 H 0.014 0.986 39 H 0.031 0.969 40 H 0.269 0.731 41 H 0.071 0.929 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.349 -16.967 -12.732 21.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.043 6.043 3 C -0.175 4.175 4 H 0.112 0.888 5 C -0.152 4.152 6 C -0.159 4.159 7 C -0.192 4.192 8 C -0.020 4.020 9 H 0.106 0.894 10 N -0.319 5.319 11 C -0.064 4.064 12 C -0.009 4.009 13 H 0.130 0.870 14 C -0.077 4.077 15 N -0.151 5.151 16 C -0.019 4.019 17 C -0.645 4.645 18 H 0.069 0.931 19 C -0.184 4.184 20 N -0.544 5.544 21 Si 0.893 3.107 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.215 1.215 25 C -0.123 4.123 26 H 0.116 0.884 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.159 0.841 36 H 0.053 0.947 37 H 0.110 0.890 38 H 0.033 0.967 39 H 0.049 0.951 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.806 -16.574 -11.585 20.576 hybrid contribution -1.015 0.373 -1.698 2.013 sum -4.821 -16.201 -13.282 21.498 Atomic orbital electron populations 1.23371 0.94463 1.06184 1.04948 1.86773 1.07206 1.12381 1.97935 1.23182 1.00870 0.92417 1.01006 0.88757 1.21867 1.00772 0.95703 0.96845 1.21552 0.96381 0.95788 1.02184 1.22232 0.96116 1.01518 0.99312 1.21538 0.99082 0.93073 0.88328 0.89406 1.60766 1.06290 1.27254 1.37565 1.22129 0.98500 0.89707 0.96109 1.19170 0.84481 1.00003 0.97202 0.87016 1.29360 0.94537 0.91856 0.91925 1.81122 1.12707 1.10421 1.10815 1.19269 0.95077 0.90725 0.96831 1.21968 1.13128 1.17476 1.11899 0.93124 1.25788 0.95672 0.94313 1.02607 1.70808 1.18515 1.41697 1.23378 0.83582 0.75442 0.76466 0.75162 1.20666 1.21191 1.21508 1.21344 0.92009 0.95842 1.03144 0.88353 0.90467 0.90626 0.90742 0.92112 0.91408 0.91957 0.91579 0.91110 0.84093 0.94718 0.89034 0.96732 0.95128 0.92055 0.91081 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.45 101.05 1.06 0.09 16 2 S -0.27 -2.81 21.79 -107.50 -2.34 -5.15 16 3 C -0.05 -0.46 2.41 -26.74 -0.06 -0.53 16 4 H 0.09 1.08 7.21 -51.92 -0.37 0.70 16 5 C -0.11 -1.02 5.11 -26.73 -0.14 -1.15 16 6 C -0.12 -1.16 5.67 -26.73 -0.15 -1.31 16 7 C -0.15 -1.46 5.52 -26.73 -0.15 -1.60 16 8 C 0.09 0.93 2.86 -67.74 -0.19 0.74 16 9 H 0.09 0.85 7.80 -51.93 -0.40 0.45 16 10 N -0.69 -8.54 5.76 -106.76 -0.62 -9.16 16 11 C 0.07 0.93 4.92 -3.82 -0.02 0.91 16 12 C 0.01 0.24 2.42 -93.41 -0.23 0.02 16 13 H 0.11 1.99 8.14 -51.93 -0.42 1.57 16 14 C 0.24 4.81 12.98 -20.69 -0.27 4.54 16 15 N -0.47 -10.18 18.55 42.23 0.78 -9.40 16 16 C 0.02 0.45 3.74 -27.88 -0.10 0.34 16 17 C -0.61 -16.28 8.60 -34.44 -0.30 -16.58 16 18 H 0.05 1.37 7.59 -52.48 -0.40 0.97 16 19 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 20 N -0.91 -26.64 13.65 55.43 0.76 -25.89 16 21 Si 1.07 24.96 29.90 -169.99 -5.08 19.87 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 C -0.08 -0.82 4.92 -26.76 -0.13 -0.95 16 26 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.07 0.55 7.14 -51.93 -0.37 0.18 16 29 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.06 0.53 6.92 -51.93 -0.36 0.17 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.72 6.26 -51.93 -0.32 0.39 16 33 H 0.07 0.69 7.45 -51.93 -0.39 0.30 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.34 4.47 4.64 -39.29 -0.18 4.29 16 36 H 0.03 0.49 7.43 -51.93 -0.39 0.11 16 37 H 0.09 1.20 8.06 -51.93 -0.42 0.79 16 38 H 0.01 0.35 8.01 -51.93 -0.42 -0.07 16 39 H 0.03 0.69 8.01 -51.93 -0.42 0.28 16 40 H 0.27 7.71 7.22 -40.82 -0.29 7.42 16 41 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -29.64 344.91 -8.99 -38.64 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.91 Total: 0.89 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -0.78 Total: -15.01 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.93 Total: -44.44 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.08 Total: 19.87 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -2.34 Total: -5.15 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.64 -8.99 -38.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568384021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.162 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds