Wall clock time and date at job start Tue Mar 31 2020 05:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81396 * 102.99897 * 2 1 4 4 H 1.08999 * 109.47003 * 55.00295 * 3 2 1 5 5 C 1.52992 * 109.47568 * 295.00498 * 3 2 1 6 6 C 1.53000 * 109.47431 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47270 * 59.99472 * 6 5 3 8 8 C 1.52991 * 109.47044 * 300.00333 * 7 6 5 9 9 H 1.09001 * 109.47046 * 180.02562 * 8 7 6 10 10 N 1.46899 * 109.47146 * 299.99962 * 8 7 6 11 11 C 1.46903 * 111.00195 * 275.00360 * 10 8 7 12 12 C 1.52996 * 109.47306 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.47474 * 54.99671 * 12 11 10 14 14 C 1.47198 * 109.46960 * 294.99833 * 12 11 10 15 15 N 7.12300 * 83.91295 * 17.08726 * 2 1 3 16 16 C 1.53006 * 109.47102 * 174.99634 * 12 11 10 17 17 C 1.50698 * 109.47184 * 184.99536 * 16 12 11 18 18 H 1.08005 * 119.99819 * 0.02562 * 17 16 12 19 19 C 1.37875 * 120.00046 * 179.97438 * 17 16 12 20 20 N 1.31511 * 120.00192 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47261 * 60.00310 * 21 19 17 24 24 H 1.48500 * 109.47454 * 300.00304 * 21 19 17 25 25 C 1.52995 * 109.47196 * 174.99863 * 3 2 1 26 26 H 1.09005 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47350 * 299.99544 * 1 2 3 28 28 H 1.08994 * 109.47646 * 59.99473 * 1 2 3 29 29 H 1.09008 * 109.46577 * 299.99746 * 5 3 2 30 30 H 1.09001 * 109.47326 * 59.99470 * 5 3 2 31 31 H 1.08997 * 109.47304 * 179.97438 * 6 5 3 32 32 H 1.08999 * 109.46880 * 299.99639 * 6 5 3 33 33 H 1.09000 * 109.46731 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.47033 * 60.00260 * 7 6 5 35 35 H 1.00900 * 111.00241 * 38.95399 * 10 8 7 36 36 H 1.08995 * 109.47308 * 59.99820 * 11 10 8 37 37 H 1.09004 * 109.46623 * 299.99613 * 11 10 8 38 38 H 1.09001 * 109.47002 * 65.00132 * 16 12 11 39 39 H 1.08993 * 109.46955 * 304.99694 * 16 12 11 40 40 H 0.97001 * 119.99934 * 359.97438 * 20 19 17 41 41 H 1.09008 * 109.47047 * 60.00193 * 25 3 2 42 42 H 1.08997 * 109.47311 * 300.00551 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2540 0.8418 5 6 1.7427 2.4016 -1.3072 6 6 2.0874 3.8923 -1.3074 7 6 3.6024 4.0655 -1.1820 8 6 4.0817 3.4313 0.1252 9 1 5.1609 3.5551 0.2148 10 7 3.4182 4.0875 1.2598 11 6 4.1385 5.3039 1.6592 12 6 3.4196 5.9574 2.8411 13 1 3.3118 5.2318 3.6472 14 6 2.0882 6.4163 2.4127 15 7 1.0587 6.7702 2.0811 16 6 4.2360 7.1528 3.3369 17 6 3.5926 7.7215 4.5753 18 1 2.6918 7.2748 4.9696 19 6 4.1545 8.8115 5.2055 20 7 5.2517 9.3552 4.7257 21 14 3.3575 9.5160 6.7410 22 1 4.1497 10.6763 7.2221 23 1 3.3128 8.4740 7.7982 24 1 1.9759 9.9582 6.4232 25 6 3.7369 1.9412 0.1258 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 2.2353 1.9150 -2.1491 30 1 0.6634 2.2779 -1.3968 31 1 1.7463 4.3440 -2.2389 32 1 1.5951 4.3791 -0.4656 33 1 3.8479 5.1275 -1.1817 34 1 4.0947 3.5786 -2.0239 35 1 2.4537 4.2923 1.0456 36 1 4.1681 6.0003 0.8213 37 1 5.1559 5.0441 1.9519 38 1 4.2687 7.9174 2.5607 39 1 5.2500 6.8285 3.5705 40 1 5.6658 8.9891 3.9286 41 1 4.2295 1.4546 -0.7161 42 1 4.0783 1.4894 1.0571 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568384021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:01 Heat of formation + Delta-G solvation = -25.270306 kcal Electronic energy + Delta-G solvation = -20116.621063 eV Core-core repulsion = 17220.610922 eV Total energy + Delta-G solvation = -2896.010141 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.45584 -38.45495 -36.11559 -35.30910 -33.13953 -31.84922 -30.54065 -29.50060 -27.45823 -24.55915 -23.94386 -23.61035 -23.32099 -20.06096 -19.07980 -18.30696 -17.86030 -16.74597 -16.19694 -16.02233 -15.72428 -15.61130 -15.28269 -15.06072 -14.60272 -14.57056 -14.25841 -14.15562 -14.01253 -13.79722 -13.41656 -13.37590 -13.10164 -13.06198 -12.77345 -12.66912 -12.50038 -12.37192 -12.06198 -11.98139 -11.78787 -11.64356 -11.49125 -11.09020 -10.71760 -10.64955 -10.53215 -9.39021 -8.67303 -8.64256 -6.35332 0.76544 1.53439 1.59353 1.65559 1.78463 1.82368 1.83980 2.55775 3.10930 3.11708 3.20947 3.61243 3.69338 3.92598 4.05654 4.10620 4.17986 4.27367 4.27801 4.31913 4.40203 4.40886 4.53039 4.60675 4.61084 4.77832 4.78508 4.84821 4.93686 5.00572 5.04118 5.06229 5.19348 5.20717 5.28735 5.33612 5.40025 5.91906 6.06187 6.20353 6.30495 6.62166 6.66384 7.42173 8.78002 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.026301 B = 0.003436 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.336877 B = 8147.505787 C = 8422.164404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.304 6.304 3 C -0.039 4.039 4 H 0.077 0.923 5 C -0.105 4.105 6 C -0.118 4.118 7 C -0.149 4.149 8 C 0.092 3.908 9 H 0.098 0.902 10 N -0.688 5.688 11 C 0.078 3.922 12 C 0.024 3.976 13 H 0.119 0.881 14 C 0.248 3.752 15 N -0.500 5.500 16 C 0.023 3.977 17 C -0.616 4.616 18 H 0.045 0.955 19 C -0.030 4.030 20 N -0.935 5.935 21 Si 1.105 2.895 22 H -0.282 1.282 23 H -0.265 1.265 24 H -0.283 1.283 25 C -0.079 4.079 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.334 0.666 36 H 0.034 0.966 37 H 0.107 0.893 38 H -0.003 1.003 39 H 0.033 0.967 40 H 0.262 0.738 41 H 0.083 0.917 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.536 -18.167 -13.263 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.075 6.075 3 C -0.168 4.168 4 H 0.095 0.905 5 C -0.144 4.144 6 C -0.157 4.157 7 C -0.188 4.188 8 C -0.019 4.019 9 H 0.116 0.884 10 N -0.320 5.320 11 C -0.053 4.053 12 C 0.002 3.998 13 H 0.137 0.863 14 C -0.068 4.068 15 N -0.177 5.177 16 C -0.016 4.016 17 C -0.654 4.654 18 H 0.063 0.937 19 C -0.228 4.228 20 N -0.572 5.572 21 Si 0.927 3.073 22 H -0.208 1.208 23 H -0.190 1.190 24 H -0.209 1.209 25 C -0.118 4.118 26 H 0.130 0.870 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.154 0.846 36 H 0.053 0.947 37 H 0.125 0.875 38 H 0.015 0.985 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.994 -17.801 -12.128 21.907 hybrid contribution -0.992 0.701 -1.561 1.977 sum -4.986 -17.100 -13.689 22.464 Atomic orbital electron populations 1.23419 0.92309 1.07205 1.05330 1.86856 1.09707 1.12924 1.97995 1.23105 1.00888 0.91911 1.00856 0.90468 1.21811 1.01052 0.95051 0.96520 1.21529 0.96430 0.96112 1.01655 1.22197 0.96007 1.01044 0.99517 1.21614 0.99420 0.93069 0.87785 0.88428 1.60752 1.06062 1.26154 1.39029 1.21971 0.98658 0.90227 0.94413 1.19105 0.83163 0.98415 0.99124 0.86304 1.29722 0.94694 0.91215 0.91174 1.81118 1.13607 1.11067 1.11925 1.19133 0.95632 0.91860 0.94936 1.22381 1.12787 1.17259 1.13018 0.93713 1.27044 0.95682 0.95083 1.05038 1.70910 1.19784 1.42680 1.23872 0.83069 0.74767 0.76441 0.72976 1.20768 1.18975 1.20920 1.21299 0.91924 0.95366 1.03179 0.87049 0.90623 0.89686 0.89866 0.91822 0.90690 0.93980 0.92483 0.89312 0.84580 0.94726 0.87499 0.98505 0.94869 0.92854 0.89831 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.45 113.37 1.18 -0.47 16 2 S -0.30 -5.89 21.79 -56.49 -1.23 -7.12 16 3 C -0.04 -0.73 2.41 30.59 0.07 -0.65 16 4 H 0.08 1.71 7.21 -2.39 -0.02 1.69 16 5 C -0.11 -1.71 5.11 30.59 0.16 -1.56 16 6 C -0.12 -2.12 5.67 30.60 0.17 -1.94 16 7 C -0.15 -2.55 5.52 30.59 0.17 -2.38 16 8 C 0.09 1.70 2.86 44.90 0.13 1.83 16 9 H 0.10 1.65 7.80 -2.39 -0.02 1.63 16 10 N -0.69 -16.22 5.76 -491.67 -2.83 -19.05 16 11 C 0.08 2.09 4.92 86.30 0.42 2.51 16 12 C 0.02 0.85 2.42 -12.60 -0.03 0.82 16 13 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 14 C 0.25 9.85 12.98 89.42 1.16 11.01 16 15 N -0.50 -21.39 18.55 20.03 0.37 -21.01 16 16 C 0.02 1.05 3.74 29.85 0.11 1.16 16 17 C -0.62 -32.98 8.60 25.60 0.22 -32.76 16 18 H 0.04 2.40 7.59 -2.91 -0.02 2.38 16 19 C -0.03 -1.65 5.46 84.65 0.46 -1.18 16 20 N -0.94 -55.18 13.65 21.45 0.29 -54.89 16 21 Si 1.10 49.77 29.90 68.60 2.05 51.82 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 25 C -0.08 -1.40 4.92 30.58 0.15 -1.25 16 26 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 1.07 7.14 -2.39 -0.02 1.06 16 29 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.06 1.00 6.92 -2.39 -0.02 0.99 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.04 0.94 6.26 -2.39 -0.01 0.92 16 33 H 0.06 1.10 7.45 -2.39 -0.02 1.08 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.33 8.56 4.64 -89.69 -0.42 8.14 16 36 H 0.03 0.94 7.43 -2.39 -0.02 0.92 16 37 H 0.11 2.59 8.06 -2.38 -0.02 2.57 16 38 H 0.00 -0.17 8.01 -2.39 -0.02 -0.19 16 39 H 0.03 1.49 8.01 -2.39 -0.02 1.48 16 40 H 0.26 15.23 7.22 -92.71 -0.67 14.56 16 41 H 0.08 1.30 8.14 -2.38 -0.02 1.29 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -62.68 344.91 3.72 -58.97 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.68 Total: 16.14 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 4.38 Total: -24.86 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -2.17 Total: -94.96 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 2.05 Total: 51.82 kcal Atomic # 16 Polarization: -5.89 SS G_CDS: -1.23 Total: -7.12 kcal Total: -62.68 3.72 -58.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568384021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.695 kcal (2) G-P(sol) polarization free energy of solvation -62.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds