Wall clock time and date at job start Tue Mar 31 2020 05:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00023 * 2 1 4 4 H 1.48498 * 109.47355 * 269.99809 * 3 2 1 5 5 H 1.48505 * 109.46957 * 30.00098 * 3 2 1 6 6 H 1.48504 * 109.47181 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99525 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00109 * 0.02562 * 7 2 1 10 10 O 1.42906 * 109.47157 * 179.97438 * 9 7 2 11 11 C 1.42905 * 113.99814 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46648 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47077 * 62.14879 * 12 11 10 14 14 C 1.46951 * 110.96930 * 51.91013 * 13 12 11 15 15 C 1.53236 * 109.31611 * 187.06223 * 14 13 12 16 16 N 1.47080 * 108.67996 * 306.46597 * 15 14 13 17 17 C 1.34778 * 120.88226 * 231.06550 * 16 15 14 18 18 O 1.21273 * 120.00051 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99892 * 179.97438 * 17 16 15 20 20 C 1.52999 * 117.50039 * 248.62274 * 19 17 16 21 21 C 1.52999 * 117.49550 * 179.97438 * 19 17 16 22 22 C 1.47085 * 118.23679 * 51.08409 * 16 15 14 23 23 C 1.46904 * 110.99661 * 176.40755 * 13 12 11 24 24 H 0.97001 * 120.00220 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47737 * 59.99865 * 9 7 2 26 26 H 1.08999 * 109.47302 * 299.99466 * 9 7 2 27 27 H 1.08997 * 109.47109 * 60.00301 * 11 10 9 28 28 H 1.08994 * 109.47179 * 299.99602 * 11 10 9 29 29 H 1.09004 * 109.46972 * 302.14852 * 12 11 10 30 30 H 1.08998 * 109.46828 * 182.15339 * 12 11 10 31 31 H 1.09004 * 109.34704 * 67.20210 * 14 13 12 32 32 H 1.09005 * 109.67233 * 307.11220 * 14 13 12 33 33 H 1.08994 * 109.63102 * 186.66237 * 15 14 13 34 34 H 1.08997 * 109.63138 * 66.26906 * 15 14 13 35 35 H 1.09006 * 115.54829 * 34.33195 * 19 17 16 36 36 H 1.09002 * 117.49905 * 0.02562 * 20 19 17 37 37 H 1.08997 * 117.49863 * 145.02498 * 20 19 17 38 38 H 1.09008 * 117.49808 * 214.97613 * 21 19 17 39 39 H 1.08993 * 117.50361 * 0.02562 * 21 19 17 40 40 H 1.08995 * 109.62651 * 68.52765 * 22 16 15 41 41 H 1.09006 * 109.62812 * 188.91175 * 22 16 15 42 42 H 1.09002 * 109.49210 * 52.79177 * 23 13 12 43 43 H 1.08998 * 109.49710 * 292.70677 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5854 0.0005 11 6 1.5649 -4.8755 0.0011 12 6 2.6479 -5.9563 0.0004 13 7 3.4524 -5.8441 1.2243 14 6 2.5947 -5.8226 2.4174 15 6 3.4522 -5.5286 3.6529 16 7 4.5614 -6.4935 3.6970 17 6 4.8192 -7.2004 4.8151 18 8 4.1329 -7.0448 5.8027 19 6 5.9606 -8.1843 4.8381 20 6 5.6099 -9.6712 4.9210 21 6 6.2024 -8.9554 6.1372 22 6 5.3820 -6.6661 2.4886 23 6 4.4497 -6.9201 1.2992 24 1 -0.4850 0.8400 0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 0.9445 -4.9827 -0.8886 28 1 0.9452 -4.9822 0.8913 29 1 3.2907 -5.8259 -0.8702 30 1 2.1796 -6.9398 -0.0378 31 1 2.1117 -6.7930 2.5323 32 1 1.8350 -5.0484 2.3093 33 1 2.8446 -5.6279 4.5523 34 1 3.8502 -4.5159 3.5898 35 1 6.8340 -7.9049 4.2488 36 1 4.5537 -9.9379 4.9585 37 1 6.2527 -10.3704 4.3861 38 1 7.2348 -9.1841 6.4021 39 1 5.5358 -8.7516 6.9751 40 1 5.9654 -5.7629 2.3101 41 1 6.0527 -7.5153 2.6197 42 1 5.0324 -6.9408 0.3782 43 1 3.9437 -7.8765 1.4315 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573666089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:09 Heat of formation + Delta-G solvation = -40.892608 kcal Electronic energy + Delta-G solvation = -22485.199630 eV Core-core repulsion = 19145.759183 eV Total energy + Delta-G solvation = -3339.440446 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.44838 -38.56962 -36.70916 -36.19211 -34.59069 -32.66064 -31.30710 -29.90379 -27.30134 -26.10961 -24.96010 -23.21025 -22.74079 -22.31024 -21.84959 -20.43110 -18.78605 -17.82444 -16.41351 -16.14696 -15.84331 -15.67978 -15.41144 -15.14894 -14.69102 -14.58487 -14.34682 -14.24700 -13.78505 -13.18337 -13.09089 -12.73862 -12.47490 -12.05977 -11.88438 -11.83993 -11.49797 -11.41121 -11.21626 -10.99546 -10.90313 -10.80638 -10.75755 -10.68967 -10.40291 -9.99929 -9.82964 -9.07770 -8.82856 -8.77555 -8.15939 -8.10404 -6.08778 -4.09862 2.34696 2.81328 3.32102 3.37141 3.42884 3.57872 3.89434 4.23102 4.36782 4.46981 4.57953 4.72887 4.78041 4.85209 5.00270 5.06275 5.15756 5.26452 5.27889 5.30126 5.38901 5.44226 5.55945 5.58687 5.62334 5.71324 5.75693 5.79030 5.82667 5.99180 6.08246 6.11637 6.24465 6.41717 7.06813 7.12723 7.15285 7.34461 7.44197 7.82817 8.06834 8.18279 8.61627 9.04397 9.55021 11.02886 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024711 B = 0.003324 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.817861 B = 8420.957211 C = 8939.273075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.378 6.378 11 C 0.060 3.940 12 C 0.063 3.937 13 N -0.523 5.523 14 C 0.041 3.959 15 C 0.116 3.884 16 N -0.607 5.607 17 C 0.543 3.457 18 O -0.546 6.546 19 C -0.195 4.195 20 C -0.153 4.153 21 C -0.148 4.148 22 C 0.112 3.888 23 C 0.042 3.958 24 H 0.263 0.737 25 H 0.002 0.998 26 H 0.003 0.997 27 H 0.041 0.959 28 H 0.038 0.962 29 H 0.083 0.917 30 H 0.037 0.963 31 H 0.030 0.970 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.112 -19.853 5.621 23.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.549 4.549 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.298 6.298 11 C -0.018 4.018 12 C -0.064 4.064 13 N -0.248 5.248 14 C -0.088 4.088 15 C -0.006 4.006 16 N -0.340 5.340 17 C 0.331 3.669 18 O -0.424 6.424 19 C -0.216 4.216 20 C -0.190 4.190 21 C -0.186 4.186 22 C -0.011 4.011 23 C -0.087 4.087 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.021 0.979 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.143 0.857 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 11.032 -19.153 6.124 22.936 hybrid contribution -0.410 0.193 -0.250 0.518 sum 10.622 -18.960 5.874 22.513 Atomic orbital electron populations 1.69964 1.06111 1.27098 1.50794 1.24951 0.94959 0.99428 0.95241 0.86347 0.79715 0.82319 0.78180 1.20526 1.21137 1.19590 1.21049 0.94080 0.89292 1.50445 0.91501 1.20187 0.88841 0.83906 0.95120 1.87971 1.34579 1.12207 1.95019 1.22353 0.93945 0.86448 0.99099 1.22142 0.95468 0.95992 0.92804 1.61785 1.16355 1.44711 1.01965 1.22574 0.95711 1.00912 0.89575 1.21763 0.87944 0.92546 0.98333 1.48122 1.32521 1.41074 1.12318 1.19653 0.84381 0.80472 0.82385 1.90679 1.50677 1.67124 1.33873 1.22225 1.00090 0.93878 1.05366 1.22929 1.02602 0.91504 1.02003 1.22960 1.02637 1.01162 0.91807 1.21891 0.93137 1.02631 0.83451 1.22445 0.95019 0.92539 0.98673 0.92715 0.98007 0.97938 0.94104 0.94390 0.89839 0.94480 0.95179 0.88102 0.88880 0.89962 0.85740 0.88370 0.87796 0.87927 0.87440 0.90153 0.89459 0.89440 0.94870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -15.05 9.43 -34.44 -0.32 -15.37 16 8 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 9 C 0.19 5.29 5.69 36.00 0.20 5.49 16 10 O -0.38 -8.96 10.23 -35.23 -0.36 -9.32 16 11 C 0.06 1.07 5.56 37.16 0.21 1.27 16 12 C 0.06 0.91 5.51 -3.83 -0.02 0.89 16 13 N -0.52 -7.49 4.63 -234.27 -1.09 -8.57 16 14 C 0.04 0.58 5.23 -3.67 -0.02 0.56 16 15 C 0.12 1.66 6.59 -3.60 -0.02 1.63 16 16 N -0.61 -7.63 3.01 -172.46 -0.52 -8.15 16 17 C 0.54 7.09 7.49 -10.98 -0.08 7.01 16 18 O -0.55 -9.11 15.71 5.56 0.09 -9.02 16 19 C -0.19 -1.76 4.95 -91.77 -0.45 -2.21 16 20 C -0.15 -1.14 10.24 -26.70 -0.27 -1.41 16 21 C -0.15 -1.21 10.05 -26.70 -0.27 -1.48 16 22 C 0.11 1.11 6.45 -3.60 -0.02 1.09 16 23 C 0.04 0.45 5.62 -3.70 -0.02 0.43 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 25 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 26 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.67 6.03 -51.93 -0.31 0.35 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 1.63 5.74 -51.93 -0.30 1.33 16 33 H 0.09 1.38 7.06 -51.93 -0.37 1.01 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.12 0.86 6.88 -51.93 -0.36 0.50 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.11 1.06 7.67 -51.93 -0.40 0.67 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 0.61 5.78 -51.93 -0.30 0.31 16 42 H 0.09 0.81 8.11 -51.93 -0.42 0.39 16 43 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 347.10 15.07 5.23 5.23 Total: -1.00 -33.84 347.10 -9.20 -43.04 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -7.07 Total: -3.26 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -1.20 Total: -0.60 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: -0.87 Total: -43.04 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.27 Total: -18.34 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.84 -9.20 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573666089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.149 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds