Wall clock time and date at job start Tue Mar 31 2020 05:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00023 * 2 1 4 4 H 1.48498 * 109.47355 * 269.99809 * 3 2 1 5 5 H 1.48505 * 109.46957 * 30.00098 * 3 2 1 6 6 H 1.48504 * 109.47181 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99525 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00109 * 0.02562 * 7 2 1 10 10 O 1.42906 * 109.47157 * 179.97438 * 9 7 2 11 11 C 1.42905 * 113.99814 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46648 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47077 * 62.14879 * 12 11 10 14 14 C 1.46951 * 110.96930 * 51.91013 * 13 12 11 15 15 C 1.53236 * 109.31611 * 187.06223 * 14 13 12 16 16 N 1.47080 * 108.67996 * 306.46597 * 15 14 13 17 17 C 1.34778 * 120.88226 * 231.06550 * 16 15 14 18 18 O 1.21273 * 120.00051 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99892 * 179.97438 * 17 16 15 20 20 C 1.52999 * 117.50039 * 248.62274 * 19 17 16 21 21 C 1.52999 * 117.49550 * 179.97438 * 19 17 16 22 22 C 1.47085 * 118.23679 * 51.08409 * 16 15 14 23 23 C 1.46904 * 110.99661 * 176.40755 * 13 12 11 24 24 H 0.97001 * 120.00220 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47737 * 59.99865 * 9 7 2 26 26 H 1.08999 * 109.47302 * 299.99466 * 9 7 2 27 27 H 1.08997 * 109.47109 * 60.00301 * 11 10 9 28 28 H 1.08994 * 109.47179 * 299.99602 * 11 10 9 29 29 H 1.09004 * 109.46972 * 302.14852 * 12 11 10 30 30 H 1.08998 * 109.46828 * 182.15339 * 12 11 10 31 31 H 1.09004 * 109.34704 * 67.20210 * 14 13 12 32 32 H 1.09005 * 109.67233 * 307.11220 * 14 13 12 33 33 H 1.08994 * 109.63102 * 186.66237 * 15 14 13 34 34 H 1.08997 * 109.63138 * 66.26906 * 15 14 13 35 35 H 1.09006 * 115.54829 * 34.33195 * 19 17 16 36 36 H 1.09002 * 117.49905 * 0.02562 * 20 19 17 37 37 H 1.08997 * 117.49863 * 145.02498 * 20 19 17 38 38 H 1.09008 * 117.49808 * 214.97613 * 21 19 17 39 39 H 1.08993 * 117.50361 * 0.02562 * 21 19 17 40 40 H 1.08995 * 109.62651 * 68.52765 * 22 16 15 41 41 H 1.09006 * 109.62812 * 188.91175 * 22 16 15 42 42 H 1.09002 * 109.49210 * 52.79177 * 23 13 12 43 43 H 1.08998 * 109.49710 * 292.70677 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5854 0.0005 11 6 1.5649 -4.8755 0.0011 12 6 2.6479 -5.9563 0.0004 13 7 3.4524 -5.8441 1.2243 14 6 2.5947 -5.8226 2.4174 15 6 3.4522 -5.5286 3.6529 16 7 4.5614 -6.4935 3.6970 17 6 4.8192 -7.2004 4.8151 18 8 4.1329 -7.0448 5.8027 19 6 5.9606 -8.1843 4.8381 20 6 5.6099 -9.6712 4.9210 21 6 6.2024 -8.9554 6.1372 22 6 5.3820 -6.6661 2.4886 23 6 4.4497 -6.9201 1.2992 24 1 -0.4850 0.8400 0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 0.9445 -4.9827 -0.8886 28 1 0.9452 -4.9822 0.8913 29 1 3.2907 -5.8259 -0.8702 30 1 2.1796 -6.9398 -0.0378 31 1 2.1117 -6.7930 2.5323 32 1 1.8350 -5.0484 2.3093 33 1 2.8446 -5.6279 4.5523 34 1 3.8502 -4.5159 3.5898 35 1 6.8340 -7.9049 4.2488 36 1 4.5537 -9.9379 4.9585 37 1 6.2527 -10.3704 4.3861 38 1 7.2348 -9.1841 6.4021 39 1 5.5358 -8.7516 6.9751 40 1 5.9654 -5.7629 2.3101 41 1 6.0527 -7.5153 2.6197 42 1 5.0324 -6.9408 0.3782 43 1 3.9437 -7.8765 1.4315 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573666089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:09 Heat of formation + Delta-G solvation = -64.700796 kcal Electronic energy + Delta-G solvation = -22486.232030 eV Core-core repulsion = 19145.759183 eV Total energy + Delta-G solvation = -3340.472847 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.43165 -39.69323 -38.26886 -37.05534 -35.82662 -34.81310 -32.31611 -31.26524 -29.19230 -27.44268 -25.93408 -24.48208 -24.14025 -23.32570 -22.99916 -21.53516 -19.71915 -18.74341 -18.58892 -17.44087 -17.18273 -17.08618 -16.45659 -16.35832 -16.03069 -15.76989 -15.68620 -15.29919 -15.12696 -14.81402 -14.26457 -13.88840 -13.61824 -13.50448 -13.18138 -13.00390 -12.78610 -12.70028 -12.51861 -12.43313 -12.34124 -12.19110 -12.05846 -11.67370 -11.52354 -11.40493 -11.24981 -10.87658 -10.82654 -10.17439 -9.86081 -9.18242 -8.31464 -6.43037 1.39874 1.41068 1.42703 1.54840 1.86596 2.35211 2.83506 2.91378 3.02524 3.24324 3.43205 3.80200 3.88600 3.92282 3.98505 4.00425 4.16353 4.17052 4.23144 4.32173 4.41749 4.46092 4.53211 4.66630 4.72930 4.74707 4.78672 4.82473 4.86256 4.90686 4.99023 5.02596 5.06206 5.19634 5.22992 5.38680 5.56401 5.96461 6.00178 6.13290 6.38745 6.57348 6.86294 7.07546 7.29137 8.80917 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024711 B = 0.003324 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.817861 B = 8420.957211 C = 8939.273075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.210 3.790 10 O -0.391 6.391 11 C 0.049 3.951 12 C 0.073 3.927 13 N -0.547 5.547 14 C 0.051 3.949 15 C 0.120 3.880 16 N -0.607 5.607 17 C 0.534 3.466 18 O -0.594 6.594 19 C -0.201 4.201 20 C -0.136 4.136 21 C -0.153 4.153 22 C 0.111 3.889 23 C 0.043 3.957 24 H 0.270 0.730 25 H -0.017 1.017 26 H -0.019 1.019 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.155 0.845 36 H 0.083 0.917 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.126 0.874 42 H 0.109 0.891 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.603 -21.189 4.755 25.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.805 3.195 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.135 3.865 10 O -0.310 6.310 11 C -0.028 4.028 12 C -0.054 4.054 13 N -0.272 5.272 14 C -0.078 4.078 15 C -0.004 4.004 16 N -0.339 5.339 17 C 0.324 3.676 18 O -0.475 6.475 19 C -0.221 4.221 20 C -0.173 4.173 21 C -0.190 4.190 22 C -0.011 4.011 23 C -0.085 4.085 24 H 0.079 0.921 25 H 0.001 0.999 26 H -0.002 1.002 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.173 0.827 36 H 0.101 0.899 37 H 0.156 0.844 38 H 0.148 0.852 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.144 0.856 42 H 0.127 0.873 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.542 -20.524 5.230 25.139 hybrid contribution -1.231 0.528 0.037 1.339 sum 12.311 -19.997 5.266 24.066 Atomic orbital electron populations 1.70071 1.07764 1.28559 1.50803 1.25957 0.95939 1.03388 0.94054 0.85201 0.78367 0.77105 0.78862 1.19149 1.20092 1.18925 1.21372 0.94055 0.90828 1.51770 0.92063 1.19773 0.88653 0.85045 0.93071 1.87919 1.34419 1.13633 1.95035 1.22710 0.95786 0.84894 0.99454 1.22065 0.94642 0.95569 0.93125 1.61753 1.16851 1.47147 1.01496 1.22355 0.95244 1.00262 0.89908 1.21514 0.88671 0.92370 0.97811 1.48231 1.32065 1.40268 1.13373 1.20474 0.84890 0.80653 0.81553 1.90654 1.52647 1.68685 1.35563 1.22285 0.99307 0.93703 1.06819 1.23043 1.02436 0.90641 1.01217 1.23035 1.03732 1.01231 0.91036 1.22132 0.92998 1.04097 0.81896 1.22567 0.94301 0.91647 0.99974 0.92129 0.99890 1.00167 0.93384 0.94382 0.89179 0.91391 0.94371 0.90821 0.90306 0.91801 0.82745 0.89879 0.84405 0.85165 0.90082 0.90601 0.85596 0.87277 0.93778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.85 13.29 21.45 0.28 -56.57 16 2 C 0.00 0.28 5.46 84.66 0.46 0.74 16 3 Si 0.98 45.05 29.54 68.60 2.03 47.07 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.54 -32.74 9.43 25.60 0.24 -32.50 16 8 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 9 C 0.21 11.92 5.69 71.23 0.41 12.32 16 10 O -0.39 -18.99 10.23 -148.98 -1.52 -20.51 16 11 C 0.05 1.77 5.56 71.98 0.40 2.17 16 12 C 0.07 1.98 5.51 86.31 0.48 2.45 16 13 N -0.55 -15.03 4.63 -895.10 -4.15 -19.18 16 14 C 0.05 1.49 5.23 86.37 0.45 1.94 16 15 C 0.12 3.57 6.59 86.35 0.57 4.14 16 16 N -0.61 -14.86 3.01 -817.94 -2.46 -17.32 16 17 C 0.53 13.68 7.49 87.66 0.66 14.34 16 18 O -0.59 -20.60 15.71 -3.01 -0.05 -20.64 16 19 C -0.20 -3.10 4.95 -11.54 -0.06 -3.16 16 20 C -0.14 -1.61 10.24 30.61 0.31 -1.29 16 21 C -0.15 -2.19 10.05 30.61 0.31 -1.88 16 22 C 0.11 1.90 6.45 86.35 0.56 2.46 16 23 C 0.04 0.79 5.62 86.38 0.49 1.28 16 24 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 25 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 26 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.04 1.38 6.03 -2.39 -0.01 1.37 16 29 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 2.53 5.74 -2.38 -0.01 2.52 16 33 H 0.08 2.53 7.06 -2.39 -0.02 2.51 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.16 1.44 6.88 -2.38 -0.02 1.43 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.13 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.08 1.61 7.67 -2.39 -0.02 1.59 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.13 1.20 5.78 -2.38 -0.01 1.19 16 42 H 0.11 1.59 8.11 -2.39 -0.02 1.57 16 43 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -76.20 347.10 0.38 -75.82 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 0.98 Total: 8.32 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 5.27 Total: 3.00 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -6.33 Total: -93.06 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -1.57 Total: -41.16 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -76.20 0.38 -75.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573666089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.119 kcal (2) G-P(sol) polarization free energy of solvation -76.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds