Wall clock time and date at job start Tue Mar 31 2020 06:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00148 * 2 1 4 4 H 1.48502 * 109.47408 * 270.00018 * 3 2 1 5 5 H 1.48502 * 109.47396 * 30.00015 * 3 2 1 6 6 H 1.48495 * 109.47355 * 149.99890 * 3 2 1 7 7 C 1.37876 * 119.99503 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00235 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99472 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.53346 * 109.41904 * 295.13082 * 10 9 7 12 12 C 1.53195 * 109.14901 * 178.67276 * 11 10 9 13 13 N 1.46919 * 108.89273 * 54.57640 * 12 11 10 14 14 C 1.34778 * 120.63255 * 126.34238 * 13 12 11 15 15 O 1.21279 * 120.00169 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00023 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.46931 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47098 * 180.02562 * 17 16 14 19 19 C 1.50702 * 109.47531 * 179.97438 * 18 17 16 20 20 N 1.34770 * 120.00583 * 179.97438 * 19 18 17 21 21 O 1.21282 * 119.99516 * 0.02562 * 19 18 17 22 22 C 1.46933 * 118.74003 * 306.32349 * 13 12 11 23 23 C 1.53034 * 109.46014 * 174.99948 * 10 9 7 24 24 H 0.97004 * 120.00347 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47447 * 60.00201 * 9 7 2 26 26 H 1.08997 * 109.47449 * 299.99919 * 9 7 2 27 27 H 1.09001 * 109.45799 * 55.03110 * 10 9 7 28 28 H 1.08997 * 109.68637 * 58.70485 * 11 10 9 29 29 H 1.09002 * 109.47277 * 298.50741 * 11 10 9 30 30 H 1.09002 * 109.58720 * 294.71670 * 12 11 10 31 31 H 1.08996 * 109.58651 * 174.43567 * 12 11 10 32 32 H 1.09001 * 109.47488 * 299.99559 * 16 14 13 33 33 H 1.09001 * 109.47269 * 59.99982 * 16 14 13 34 34 H 1.08996 * 109.47074 * 299.99864 * 17 16 14 35 35 H 1.09001 * 109.47188 * 59.99897 * 17 16 14 36 36 H 1.09005 * 109.47553 * 300.00005 * 18 17 16 37 37 H 1.09001 * 109.47240 * 59.99862 * 18 17 16 38 38 H 0.97001 * 119.99784 * 0.02562 * 20 19 18 39 39 H 0.97005 * 120.00352 * 179.97438 * 20 19 18 40 40 H 1.08994 * 109.58580 * 173.39910 * 22 13 12 41 41 H 1.09006 * 109.57831 * 293.67403 * 22 13 12 42 42 H 1.08994 * 109.50232 * 61.43679 * 23 10 9 43 43 H 1.09007 * 109.52628 * 301.35340 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0023 11 6 3.6118 -3.3212 1.3119 12 6 4.0966 -4.7743 1.2924 13 7 5.5416 -4.7902 1.0276 14 6 6.3842 -5.4401 1.8547 15 8 5.9517 -6.0188 2.8288 16 6 7.8639 -5.4477 1.5691 17 6 8.5882 -6.2499 2.6522 18 6 10.0905 -6.2571 2.3626 19 6 10.8041 -7.0466 3.4297 20 7 12.1432 -7.1897 3.3801 21 8 10.1730 -7.5540 4.3326 22 6 6.0508 -4.0844 -0.1563 23 6 5.5467 -2.6383 -0.1229 24 1 -0.4851 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8752 -0.6805 -0.8888 27 1 3.5875 -3.1759 -0.8397 28 1 2.5267 -3.3009 1.4130 29 1 4.0659 -2.7974 2.1531 30 1 3.5753 -5.3229 0.5080 31 1 3.8969 -5.2391 2.2579 32 1 8.0440 -5.9059 0.5967 33 1 8.2381 -4.4240 1.5633 34 1 8.4082 -5.7921 3.6248 35 1 8.2139 -7.2736 2.6576 36 1 10.2710 -6.7146 1.3898 37 1 10.4645 -5.2332 2.3575 38 1 12.6479 -6.7842 2.6578 39 1 12.6025 -7.6976 4.0672 40 1 7.1406 -4.0919 -0.1456 41 1 5.6908 -4.5784 -1.0589 42 1 5.9824 -2.1208 0.7317 43 1 5.8373 -2.1304 -1.0426 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577755752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:24 Heat of formation + Delta-G solvation = -106.498654 kcal Electronic energy + Delta-G solvation = -22018.679922 eV Core-core repulsion = 18676.394584 eV Total energy + Delta-G solvation = -3342.285338 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.17402 -39.66241 -37.46935 -34.47570 -34.06473 -33.97292 -32.13285 -30.96270 -29.19649 -28.10170 -24.74904 -23.53403 -22.44612 -21.39204 -20.59877 -19.69466 -18.68710 -17.76679 -16.96282 -16.87950 -16.60251 -16.33437 -15.59638 -15.27081 -14.36730 -14.17388 -14.09109 -13.94746 -13.40400 -13.34231 -12.95952 -12.93636 -12.46573 -12.34796 -12.11625 -11.98861 -11.57494 -11.48303 -11.15218 -10.98202 -10.86108 -10.66150 -10.37452 -10.30285 -10.05794 -9.81417 -9.77271 -9.62765 -9.46663 -9.06873 -8.54238 -8.38941 -6.04735 -4.02238 2.33008 2.74693 3.02956 3.28501 3.28933 3.37151 3.40035 4.38875 4.44231 4.49941 4.71913 4.78858 4.94592 5.11436 5.16896 5.24805 5.26285 5.28471 5.35973 5.40242 5.54318 5.66193 5.76856 5.89239 5.93077 6.04023 6.19082 6.23355 6.31548 6.40376 6.43033 6.57761 6.82937 6.86596 6.94137 7.01766 7.22133 7.42056 7.57748 7.79081 7.92964 8.31252 8.53213 9.00220 9.58054 11.08569 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034502 B = 0.002837 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.353701 B = 9867.206561 C =10193.606342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.072 4.072 11 C -0.118 4.118 12 C 0.108 3.892 13 N -0.608 5.608 14 C 0.510 3.490 15 O -0.545 6.545 16 C -0.140 4.140 17 C -0.091 4.091 18 C -0.142 4.142 19 C 0.514 3.486 20 N -0.861 5.861 21 O -0.537 6.537 22 C 0.108 3.892 23 C -0.134 4.134 24 H 0.262 0.738 25 H 0.014 0.986 26 H 0.011 0.989 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.401 0.599 39 H 0.400 0.600 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.457 -10.807 -0.729 26.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.092 0.908 9 C -0.046 4.046 10 C -0.091 4.091 11 C -0.157 4.157 12 C -0.014 4.014 13 N -0.342 5.342 14 C 0.298 3.702 15 O -0.423 6.423 16 C -0.180 4.180 17 C -0.129 4.129 18 C -0.182 4.182 19 C 0.299 3.701 20 N -0.425 5.425 21 O -0.413 6.413 22 C -0.015 4.015 23 C -0.172 4.172 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.029 0.971 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.229 0.771 39 H 0.230 0.770 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 23.471 -11.252 0.296 26.031 hybrid contribution 0.859 1.134 -0.301 1.454 sum 24.330 -10.118 -0.005 26.350 Atomic orbital electron populations 1.69914 1.06278 1.26821 1.51269 1.25040 0.94708 0.99135 0.94718 0.86797 0.80367 0.83825 0.78371 1.20415 1.21497 1.19103 1.21138 0.89428 0.94353 1.50487 0.90839 1.19615 0.97240 0.91637 0.96124 1.21059 0.91963 0.99059 0.97029 1.21949 1.02660 0.92868 0.98173 1.21760 0.78827 0.98659 1.02131 1.48212 1.08016 1.51877 1.26071 1.20589 0.88642 0.78438 0.82484 1.90702 1.78607 1.44624 1.28320 1.21701 0.92567 1.02684 1.01028 1.21092 0.90871 1.02015 0.98922 1.21709 0.97142 1.01184 0.98216 1.20790 0.82357 0.80196 0.86782 1.43942 1.08269 1.58325 1.31966 1.90795 1.66086 1.48161 1.36258 1.21801 0.98630 0.93500 0.87600 1.22065 0.98380 0.94596 1.02134 0.92794 0.96723 0.97097 0.91752 0.89284 0.92470 0.91819 0.89584 0.89003 0.88857 0.90328 0.90379 0.88681 0.88638 0.77128 0.76998 0.90401 0.91393 0.91997 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 2 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 3 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -14.14 8.94 -34.44 -0.31 -14.45 16 8 H 0.07 2.16 7.30 -52.49 -0.38 1.77 16 9 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 10 C -0.07 -1.31 2.10 -90.42 -0.19 -1.50 16 11 C -0.12 -2.13 5.21 -26.45 -0.14 -2.27 16 12 C 0.11 1.70 6.42 -3.71 -0.02 1.68 16 13 N -0.61 -8.46 2.97 -172.77 -0.51 -8.97 16 14 C 0.51 7.23 7.70 -10.99 -0.08 7.15 16 15 O -0.54 -9.98 15.39 5.56 0.09 -9.89 16 16 C -0.14 -1.28 4.05 -27.88 -0.11 -1.40 16 17 C -0.09 -0.92 3.79 -26.73 -0.10 -1.02 16 18 C -0.14 -0.89 5.70 -27.88 -0.16 -1.05 16 19 C 0.51 4.49 8.10 -10.99 -0.09 4.40 16 20 N -0.86 -3.91 8.87 31.22 0.28 -3.64 16 21 O -0.54 -7.61 16.82 5.56 0.09 -7.52 16 22 C 0.11 1.21 6.34 -3.71 -0.02 1.19 16 23 C -0.13 -1.86 5.36 -26.62 -0.14 -2.01 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 26 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.09 1.79 6.93 -51.93 -0.36 1.43 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 1.44 7.00 -51.93 -0.36 1.08 16 32 H 0.09 0.62 7.94 -51.93 -0.41 0.21 16 33 H 0.09 0.69 7.69 -51.93 -0.40 0.29 16 34 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 35 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.40 0.48 8.83 -40.82 -0.36 0.12 16 39 H 0.40 1.64 8.93 -40.82 -0.36 1.27 16 40 H 0.08 0.63 5.93 -51.93 -0.31 0.32 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 LS Contribution 343.84 15.07 5.18 5.18 Total: -1.00 -36.31 343.84 -7.44 -43.75 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.10 Total: -1.08 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -1.57 Total: -7.82 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.54 Total: -39.40 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.18 Total: -17.41 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.31 -7.44 -43.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577755752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.746 kcal (2) G-P(sol) polarization free energy of solvation -36.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds