Wall clock time and date at job start Tue Mar 31 2020 06:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00148 * 2 1 4 4 H 1.48502 * 109.47408 * 270.00018 * 3 2 1 5 5 H 1.48502 * 109.47396 * 30.00015 * 3 2 1 6 6 H 1.48495 * 109.47355 * 149.99890 * 3 2 1 7 7 C 1.37876 * 119.99503 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00235 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99472 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.53346 * 109.41904 * 295.13082 * 10 9 7 12 12 C 1.53195 * 109.14901 * 178.67276 * 11 10 9 13 13 N 1.46919 * 108.89273 * 54.57640 * 12 11 10 14 14 C 1.34778 * 120.63255 * 126.34238 * 13 12 11 15 15 O 1.21279 * 120.00169 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00023 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.46931 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47098 * 180.02562 * 17 16 14 19 19 C 1.50702 * 109.47531 * 179.97438 * 18 17 16 20 20 N 1.34770 * 120.00583 * 179.97438 * 19 18 17 21 21 O 1.21282 * 119.99516 * 0.02562 * 19 18 17 22 22 C 1.46933 * 118.74003 * 306.32349 * 13 12 11 23 23 C 1.53034 * 109.46014 * 174.99948 * 10 9 7 24 24 H 0.97004 * 120.00347 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47447 * 60.00201 * 9 7 2 26 26 H 1.08997 * 109.47449 * 299.99919 * 9 7 2 27 27 H 1.09001 * 109.45799 * 55.03110 * 10 9 7 28 28 H 1.08997 * 109.68637 * 58.70485 * 11 10 9 29 29 H 1.09002 * 109.47277 * 298.50741 * 11 10 9 30 30 H 1.09002 * 109.58720 * 294.71670 * 12 11 10 31 31 H 1.08996 * 109.58651 * 174.43567 * 12 11 10 32 32 H 1.09001 * 109.47488 * 299.99559 * 16 14 13 33 33 H 1.09001 * 109.47269 * 59.99982 * 16 14 13 34 34 H 1.08996 * 109.47074 * 299.99864 * 17 16 14 35 35 H 1.09001 * 109.47188 * 59.99897 * 17 16 14 36 36 H 1.09005 * 109.47553 * 300.00005 * 18 17 16 37 37 H 1.09001 * 109.47240 * 59.99862 * 18 17 16 38 38 H 0.97001 * 119.99784 * 0.02562 * 20 19 18 39 39 H 0.97005 * 120.00352 * 179.97438 * 20 19 18 40 40 H 1.08994 * 109.58580 * 173.39910 * 22 13 12 41 41 H 1.09006 * 109.57831 * 293.67403 * 22 13 12 42 42 H 1.08994 * 109.50232 * 61.43679 * 23 10 9 43 43 H 1.09007 * 109.52628 * 301.35340 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0023 11 6 3.6118 -3.3212 1.3119 12 6 4.0966 -4.7743 1.2924 13 7 5.5416 -4.7902 1.0276 14 6 6.3842 -5.4401 1.8547 15 8 5.9517 -6.0188 2.8288 16 6 7.8639 -5.4477 1.5691 17 6 8.5882 -6.2499 2.6522 18 6 10.0905 -6.2571 2.3626 19 6 10.8041 -7.0466 3.4297 20 7 12.1432 -7.1897 3.3801 21 8 10.1730 -7.5540 4.3326 22 6 6.0508 -4.0844 -0.1563 23 6 5.5467 -2.6383 -0.1229 24 1 -0.4851 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8752 -0.6805 -0.8888 27 1 3.5875 -3.1759 -0.8397 28 1 2.5267 -3.3009 1.4130 29 1 4.0659 -2.7974 2.1531 30 1 3.5753 -5.3229 0.5080 31 1 3.8969 -5.2391 2.2579 32 1 8.0440 -5.9059 0.5967 33 1 8.2381 -4.4240 1.5633 34 1 8.4082 -5.7921 3.6248 35 1 8.2139 -7.2736 2.6576 36 1 10.2710 -6.7146 1.3898 37 1 10.4645 -5.2332 2.3575 38 1 12.6479 -6.7842 2.6578 39 1 12.6025 -7.6976 4.0672 40 1 7.1406 -4.0919 -0.1456 41 1 5.6908 -4.5784 -1.0589 42 1 5.9824 -2.1208 0.7317 43 1 5.8373 -2.1304 -1.0426 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577755752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:23 Heat of formation + Delta-G solvation = -134.702018 kcal Electronic energy + Delta-G solvation = -22019.902912 eV Core-core repulsion = 18676.394584 eV Total energy + Delta-G solvation = -3343.508327 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.23049 -40.40393 -38.75013 -35.67035 -35.25157 -34.55304 -34.02750 -32.11707 -30.55960 -29.18498 -26.24646 -24.59895 -23.59469 -22.81870 -21.26230 -21.00787 -19.83499 -18.86338 -18.36500 -17.73001 -17.55783 -17.07571 -16.66029 -16.35446 -16.15369 -15.29971 -15.10623 -15.01183 -14.84609 -14.59133 -14.26073 -14.15464 -13.97171 -13.53028 -13.11605 -12.99181 -12.77825 -12.71589 -12.39838 -12.32320 -12.08182 -12.00680 -11.70507 -11.67691 -11.31276 -11.14038 -11.07377 -10.96609 -10.72680 -10.62548 -10.59676 -9.56977 -8.25137 -6.27489 1.36131 1.39121 1.50146 1.69650 1.72714 2.07559 2.38600 2.73351 3.10453 3.58222 3.89919 4.01160 4.02680 4.08313 4.12696 4.16243 4.24960 4.42311 4.52788 4.65081 4.66338 4.71483 4.75682 4.85027 4.85589 4.91352 4.98818 5.13951 5.20228 5.23066 5.26795 5.31642 5.42732 5.49023 5.63567 5.74175 5.77356 5.95755 6.34756 6.53798 6.55638 6.80948 7.25051 7.36355 7.44459 8.91626 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034502 B = 0.002837 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.353701 B = 9867.206561 C =10193.606342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.003 4.003 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.247 1.247 7 C -0.519 4.519 8 H 0.034 0.966 9 C -0.007 4.007 10 C -0.071 4.071 11 C -0.111 4.111 12 C 0.116 3.884 13 N -0.609 5.609 14 C 0.500 3.500 15 O -0.600 6.600 16 C -0.127 4.127 17 C -0.089 4.089 18 C -0.131 4.131 19 C 0.504 3.496 20 N -0.839 5.839 21 O -0.607 6.607 22 C 0.108 3.892 23 C -0.127 4.127 24 H 0.263 0.737 25 H 0.011 0.989 26 H 0.023 0.977 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.040 0.960 35 H 0.044 0.956 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.421 0.579 39 H 0.403 0.597 40 H 0.127 0.873 41 H 0.083 0.917 42 H 0.061 0.939 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.125 -9.738 -3.090 30.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.199 4.199 3 Si 0.774 3.226 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.170 1.170 7 C -0.557 4.557 8 H 0.052 0.948 9 C -0.044 4.044 10 C -0.089 4.089 11 C -0.150 4.150 12 C -0.007 4.007 13 N -0.342 5.342 14 C 0.291 3.709 15 O -0.481 6.481 16 C -0.166 4.166 17 C -0.128 4.128 18 C -0.170 4.170 19 C 0.291 3.709 20 N -0.403 5.403 21 O -0.488 6.488 22 C -0.013 4.013 23 C -0.165 4.165 24 H 0.072 0.928 25 H 0.030 0.970 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.151 0.849 33 H 0.145 0.855 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.252 0.748 39 H 0.233 0.767 40 H 0.145 0.855 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 28.228 -10.170 -2.128 30.080 hybrid contribution -0.653 0.722 0.453 1.074 sum 27.575 -9.448 -1.676 29.197 Atomic orbital electron populations 1.70087 1.08369 1.27882 1.53387 1.26055 0.95579 1.03603 0.94629 0.85661 0.79427 0.78362 0.79179 1.18889 1.21736 1.17021 1.21522 0.92278 0.92821 1.49119 0.94818 1.19589 0.93721 0.94876 0.96234 1.20994 0.95748 0.95880 0.96309 1.21790 1.00327 0.94645 0.98192 1.21449 0.81098 0.96624 1.01518 1.48332 1.06769 1.52059 1.27029 1.21643 0.90795 0.77127 0.81348 1.90688 1.79847 1.46878 1.30690 1.21768 0.87908 1.04759 1.02183 1.20976 0.94101 0.99901 0.97798 1.21699 0.93603 1.03020 0.98682 1.21367 0.83350 0.79691 0.86500 1.43786 1.07130 1.57110 1.32280 1.90777 1.67712 1.51229 1.39061 1.22067 1.01431 0.91133 0.86709 1.22003 0.94131 0.97052 1.03326 0.92806 0.97028 0.95826 0.92387 0.92964 0.93548 0.91101 0.91514 0.84913 0.85490 0.94105 0.93682 0.84931 0.85252 0.74760 0.76686 0.85493 0.89909 0.91990 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.38 13.96 21.45 0.30 -60.09 16 2 C 0.00 -0.17 5.47 84.65 0.46 0.30 16 3 Si 0.95 43.97 27.47 68.60 1.88 45.86 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.25 -10.54 6.54 99.48 0.65 -9.89 16 7 C -0.52 -29.28 8.94 25.60 0.23 -29.05 16 8 H 0.03 2.10 7.30 -2.91 -0.02 2.08 16 9 C -0.01 -0.30 3.52 29.85 0.10 -0.20 16 10 C -0.07 -2.49 2.10 -10.66 -0.02 -2.51 16 11 C -0.11 -4.13 5.21 30.78 0.16 -3.97 16 12 C 0.12 3.72 6.42 86.36 0.55 4.28 16 13 N -0.61 -15.60 2.97 -818.91 -2.43 -18.03 16 14 C 0.50 13.33 7.70 87.66 0.67 14.01 16 15 O -0.60 -22.63 15.39 -3.03 -0.05 -22.68 16 16 C -0.13 -1.77 4.05 29.85 0.12 -1.65 16 17 C -0.09 -1.67 3.79 30.60 0.12 -1.56 16 18 C -0.13 -1.12 5.70 29.85 0.17 -0.95 16 19 C 0.50 7.96 8.10 87.66 0.71 8.67 16 20 N -0.84 -5.38 8.87 -173.54 -1.54 -6.92 16 21 O -0.61 -17.69 16.82 -3.03 -0.05 -17.74 16 22 C 0.11 1.89 6.34 86.36 0.55 2.43 16 23 C -0.13 -3.02 5.36 30.67 0.16 -2.86 16 24 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 25 H 0.01 0.52 7.20 -2.39 -0.02 0.50 16 26 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 27 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.05 2.28 6.93 -2.39 -0.02 2.26 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.07 2.39 7.00 -2.39 -0.02 2.37 16 32 H 0.13 0.87 7.94 -2.39 -0.02 0.85 16 33 H 0.13 1.02 7.69 -2.39 -0.02 1.01 16 34 H 0.04 1.06 8.06 -2.39 -0.02 1.04 16 35 H 0.04 1.13 8.06 -2.39 -0.02 1.11 16 36 H 0.13 0.21 8.14 -2.38 -0.02 0.19 16 37 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.42 -0.70 8.83 -92.71 -0.82 -1.51 16 39 H 0.40 2.55 8.93 -92.70 -0.83 1.72 16 40 H 0.13 1.07 5.93 -2.39 -0.01 1.05 16 41 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -88.28 343.84 1.42 -86.86 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -0.69 Total: 5.80 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 3.99 Total: -13.05 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -3.68 Total: -85.04 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -0.10 Total: -40.42 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.86 kcal Total: -88.28 1.42 -86.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577755752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.839 kcal (2) G-P(sol) polarization free energy of solvation -88.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds