Wall clock time and date at job start Tue Mar 31 2020 05:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48503 * 109.47276 * 239.99768 * 3 2 1 5 5 H 1.48496 * 109.46966 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99896 * 3 2 1 7 7 C 1.37885 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47126 * 180.02562 * 12 11 10 14 14 O 1.21279 * 119.99926 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99773 * 180.02562 * 13 12 11 16 16 C 1.46504 * 119.99531 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46883 * 179.97438 * 16 15 13 18 18 N 1.46496 * 109.46995 * 180.02562 * 17 16 15 19 19 C 1.34775 * 119.99642 * 180.02562 * 18 17 16 20 20 O 1.21279 * 120.00300 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.99773 * 180.02562 * 19 18 17 22 22 C 1.53001 * 117.49924 * 248.61926 * 21 19 18 23 23 C 1.52997 * 60.00080 * 252.51036 * 22 21 19 24 24 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47351 * 59.99818 * 9 7 2 26 26 H 1.09004 * 109.47113 * 300.00244 * 9 7 2 27 27 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 28 28 H 1.08996 * 109.47261 * 299.99589 * 10 9 7 29 29 H 1.09001 * 109.47289 * 59.99704 * 11 10 9 30 30 H 1.08996 * 109.47853 * 299.99816 * 11 10 9 31 31 H 1.08998 * 109.46509 * 60.00429 * 12 11 10 32 32 H 1.08993 * 109.46955 * 299.99989 * 12 11 10 33 33 H 0.96992 * 120.00503 * 359.97438 * 15 13 12 34 34 H 1.09001 * 109.46891 * 60.00097 * 16 15 13 35 35 H 1.08993 * 109.47378 * 299.99469 * 16 15 13 36 36 H 1.09001 * 109.46801 * 300.00349 * 17 16 15 37 37 H 1.09001 * 109.46998 * 59.99945 * 17 16 15 38 38 H 0.96998 * 120.00192 * 359.97438 * 18 17 16 39 39 H 1.09006 * 115.55393 * 34.32883 * 21 19 18 40 40 H 1.08997 * 117.49878 * 0.02562 * 22 21 19 41 41 H 1.09002 * 117.50200 * 145.02129 * 22 21 19 42 42 H 1.09000 * 117.50332 * 252.50780 * 23 22 21 43 43 H 1.09000 * 117.51934 * 107.48216 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 6 2.4742 -6.1501 -0.0005 13 6 1.7206 -7.4552 -0.0005 14 8 0.5078 -7.4551 0.0004 15 7 2.3944 -8.6224 -0.0005 16 6 1.6617 -9.8911 0.0000 17 6 2.6559 -11.0541 -0.0007 18 7 1.9233 -12.3228 -0.0008 19 6 2.5972 -13.4900 -0.0009 20 8 3.8100 -13.4901 -0.0014 21 6 1.8436 -14.7950 -0.0015 22 6 1.9183 -15.6546 1.2620 23 6 2.6656 -16.0855 -0.0017 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8902 26 1 0.6245 -2.5571 0.8897 27 1 2.8717 -3.6045 0.8895 28 1 2.8716 -3.6045 -0.8905 29 1 0.8529 -5.0451 -0.8896 30 1 0.8536 -5.0447 0.8903 31 1 3.1013 -6.0923 0.8890 32 1 3.1001 -6.0925 -0.8909 33 1 3.3643 -8.6225 -0.0009 34 1 1.0347 -9.9489 -0.8897 35 1 1.0355 -9.9486 0.8902 36 1 3.2819 -10.9964 -0.8912 37 1 3.2833 -10.9964 0.8888 38 1 0.9534 -12.3227 0.0000 39 1 0.9053 -14.7960 -0.5564 40 1 2.5122 -15.2760 2.0938 41 1 1.0292 -16.2211 1.5387 42 1 2.2681 -16.9354 -0.5564 43 1 3.7514 -15.9905 -0.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588147349.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:20 Heat of formation + Delta-G solvation = -79.396818 kcal Electronic energy + Delta-G solvation = -20435.713889 eV Core-core repulsion = 17094.603775 eV Total energy + Delta-G solvation = -3341.110114 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.45563 -39.71573 -37.02157 -36.02229 -34.89714 -34.21959 -32.61991 -30.36601 -29.07964 -25.91702 -24.80470 -23.00284 -22.85629 -22.17309 -20.65743 -20.28358 -19.96816 -18.05191 -17.04683 -16.42004 -16.32658 -16.18926 -15.81581 -15.58274 -15.29787 -14.67241 -14.44406 -14.40278 -13.72867 -13.66016 -13.05932 -12.61291 -12.49084 -12.27469 -12.07985 -11.97734 -11.69052 -11.59412 -11.16872 -11.06472 -10.96335 -10.53430 -10.52709 -10.40789 -10.39821 -9.89415 -9.64059 -9.60594 -9.30783 -9.22182 -8.98642 -8.29396 -5.94355 -3.96915 2.00703 2.37458 2.65682 3.23469 3.34248 3.36035 3.40384 3.42701 4.10405 4.22826 4.30530 4.34869 4.49707 4.57526 4.62497 4.85182 4.97480 5.07659 5.22513 5.30643 5.34080 5.40621 5.40909 5.43060 5.47532 5.60191 5.81758 5.87125 6.13726 6.17168 6.30237 6.54606 6.84111 6.94197 7.01907 7.20266 7.32296 7.71643 7.74649 7.90801 8.06882 8.17638 8.48727 9.10545 9.66626 11.16877 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.075739 B = 0.001743 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.599972 B =16064.702192 C =16317.510983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.111 4.111 11 C -0.104 4.104 12 C -0.138 4.138 13 C 0.514 3.486 14 O -0.533 6.533 15 N -0.737 5.737 16 C 0.109 3.891 17 C 0.108 3.892 18 N -0.724 5.724 19 C 0.544 3.456 20 O -0.539 6.539 21 C -0.197 4.197 22 C -0.152 4.152 23 C -0.147 4.147 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.403 0.597 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.405 0.595 39 H 0.126 0.874 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.449 -31.830 0.550 32.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.178 4.178 13 C 0.302 3.698 14 O -0.409 6.409 15 N -0.392 5.392 16 C -0.016 4.016 17 C -0.016 4.016 18 N -0.376 5.376 19 C 0.331 3.669 20 O -0.415 6.415 21 C -0.218 4.218 22 C -0.189 4.189 23 C -0.185 4.185 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.237 0.763 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.240 0.760 39 H 0.144 0.856 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.277 -31.680 0.547 31.972 hybrid contribution 0.354 0.984 -0.059 1.048 sum 4.630 -30.696 0.488 31.047 Atomic orbital electron populations 1.69967 1.06046 1.26598 1.50834 1.25039 0.94843 0.99211 0.95438 0.86667 0.79570 0.83245 0.78541 1.20292 1.21318 1.20299 1.21255 0.92960 0.91226 1.50560 0.92797 1.19094 0.94065 0.91266 0.97316 1.21653 0.99091 0.93980 1.00109 1.21460 0.97020 0.92716 1.02972 1.21801 1.00121 0.91726 1.04159 1.21140 0.88440 0.85431 0.74788 1.90714 1.14249 1.87603 1.48313 1.45904 1.10426 1.05195 1.77653 1.21346 0.94505 0.82560 1.03197 1.21457 0.94701 0.82067 1.03352 1.45711 1.10677 1.05220 1.76015 1.19684 0.87469 0.84406 0.75336 1.90718 1.13926 1.87520 1.49371 1.22192 1.02865 0.90664 1.06121 1.22961 1.03324 1.01287 0.91367 1.22971 1.00127 0.95083 1.00274 0.93007 0.96580 0.96593 0.93449 0.93442 0.91795 0.91787 0.88982 0.88988 0.76299 0.90875 0.90865 0.90602 0.90638 0.75999 0.85640 0.88172 0.87597 0.87765 0.87342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 11 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 12 C -0.14 -1.76 5.70 -27.88 -0.16 -1.92 16 13 C 0.51 6.77 7.83 -10.98 -0.09 6.69 16 14 O -0.53 -9.33 15.98 5.56 0.09 -9.24 16 15 N -0.74 -6.64 5.56 -60.29 -0.33 -6.98 16 16 C 0.11 0.84 5.79 -4.04 -0.02 0.82 16 17 C 0.11 0.73 5.79 -4.04 -0.02 0.71 16 18 N -0.72 -4.52 5.56 -60.29 -0.33 -4.85 16 19 C 0.54 4.51 7.61 -10.98 -0.08 4.43 16 20 O -0.54 -6.61 16.26 5.56 0.09 -6.52 16 21 C -0.20 -1.07 6.19 -91.77 -0.57 -1.64 16 22 C -0.15 -0.70 10.23 -26.73 -0.27 -0.97 16 23 C -0.15 -0.78 10.04 -26.73 -0.27 -1.05 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 30 H 0.06 1.21 8.10 -51.93 -0.42 0.78 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.40 2.52 8.47 -40.82 -0.35 2.18 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.41 1.55 8.47 -40.82 -0.35 1.21 16 39 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.11 0.75 7.67 -51.93 -0.40 0.36 16 LS Contribution 366.73 15.07 5.53 5.53 Total: -1.00 -36.53 366.73 -8.93 -45.46 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -7.39 Total: -2.76 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -2.29 Total: -10.77 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.07 Total: -38.62 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.18 Total: -15.75 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.53 -8.93 -45.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588147349.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.932 kcal (2) G-P(sol) polarization free energy of solvation -36.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds