Wall clock time and date at job start Tue Mar 31 2020 06:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00251 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00115 * 180.02562 * 13 12 11 16 16 C 1.46931 * 120.63134 * 359.72158 * 15 13 12 17 17 C 1.52762 * 109.00886 * 233.58589 * 16 15 13 18 18 C 1.53046 * 109.37988 * 305.58535 * 17 16 15 19 19 C 1.53035 * 109.53816 * 61.23972 * 18 17 16 20 20 H 1.09010 * 109.52564 * 58.60470 * 19 18 17 21 21 C 1.50702 * 109.49761 * 178.68163 * 19 18 17 22 22 N 1.34782 * 119.99995 * 299.84154 * 21 19 18 23 23 O 1.21279 * 119.99755 * 119.83522 * 21 19 18 24 24 C 1.46918 * 120.63470 * 179.97438 * 15 13 12 25 25 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 28 28 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 29 29 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 30 30 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 31 31 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 32 32 H 1.09002 * 109.47153 * 300.00216 * 12 11 10 33 33 H 1.09001 * 109.47289 * 60.00300 * 12 11 10 34 34 H 1.09008 * 109.58567 * 353.41427 * 16 15 13 35 35 H 1.08990 * 109.59351 * 113.83954 * 16 15 13 36 36 H 1.08995 * 109.56790 * 185.54661 * 17 16 15 37 37 H 1.08999 * 109.38786 * 65.50748 * 17 16 15 38 38 H 1.08997 * 109.45707 * 301.21916 * 18 17 16 39 39 H 1.08999 * 109.44258 * 181.25379 * 18 17 16 40 40 H 0.97000 * 119.99869 * 359.97438 * 22 21 19 41 41 H 0.97001 * 119.99597 * 179.97438 * 22 21 19 42 42 H 1.09000 * 109.59222 * 246.15666 * 24 15 13 43 43 H 1.09008 * 109.58650 * 6.43686 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 6 6.0613 -4.0793 0.0004 13 6 7.5683 -4.0794 0.0010 14 8 8.1748 -3.0291 0.0005 15 7 8.2421 -5.2466 0.0010 16 6 7.5215 -6.5271 0.0066 17 6 8.0291 -7.3786 1.1688 18 6 9.5506 -7.5136 1.0729 19 6 10.1944 -6.1286 1.1694 20 1 9.9105 -5.6597 2.1116 21 6 11.6939 -6.2656 1.1074 22 7 12.3437 -6.9890 2.0406 23 8 12.3159 -5.7248 0.2176 24 6 9.7112 -5.2629 0.0010 25 1 -0.4850 0.8401 -0.0004 26 1 3.8751 -0.6798 -0.8895 27 1 3.8745 -0.6810 0.8905 28 1 3.6577 -3.1507 0.8897 29 1 3.6584 -3.1504 -0.8902 30 1 5.9147 -2.1229 -0.8901 31 1 5.9147 -2.1231 0.8899 32 1 5.6979 -4.5928 0.8906 33 1 5.6979 -4.5935 -0.8894 34 1 6.4537 -6.3449 0.1280 35 1 7.7003 -7.0512 -0.9322 36 1 7.5725 -8.3673 1.1236 37 1 7.7652 -6.8987 2.1112 38 1 9.8151 -7.9715 0.1198 39 1 9.9114 -8.1395 1.8891 40 1 11.8462 -7.4212 2.7524 41 1 13.3088 -7.0774 2.0005 42 1 10.0721 -5.6821 -0.9383 43 1 10.0880 -4.2465 0.1161 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588147371.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:17 Heat of formation + Delta-G solvation = -105.606930 kcal Electronic energy + Delta-G solvation = -21950.869553 eV Core-core repulsion = 18608.622884 eV Total energy + Delta-G solvation = -3342.246670 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.82173 -39.57910 -37.39102 -35.04815 -34.31910 -33.09632 -32.53423 -31.68129 -30.03637 -26.56926 -25.38072 -24.44251 -22.28666 -21.69159 -20.35936 -20.01890 -19.04784 -17.96017 -17.22538 -16.91763 -16.52153 -15.89013 -15.74486 -15.47352 -14.83622 -14.67006 -14.18516 -14.11903 -13.98213 -13.48086 -13.25393 -13.05745 -12.63163 -12.32182 -12.11521 -11.96767 -11.71115 -11.50563 -11.47875 -11.09801 -11.08457 -10.69994 -10.51860 -10.29901 -10.15453 -9.90197 -9.78620 -9.62785 -9.40034 -9.10205 -8.86456 -8.47836 -5.99230 -3.96527 2.19191 2.60547 2.70677 3.19737 3.37019 3.43932 3.50267 4.10056 4.23344 4.29559 4.51704 4.55305 4.60933 4.69697 4.87234 5.00466 5.09426 5.21864 5.27680 5.33182 5.35984 5.39448 5.40201 5.51682 5.68503 5.77381 5.82775 6.04541 6.15073 6.27817 6.30155 6.44419 6.70298 6.82685 6.84179 7.00995 7.25131 7.40219 7.52940 7.80193 7.86388 8.16823 8.59730 9.05762 9.64353 11.14256 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036008 B = 0.002703 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.417691 B =10354.799575 C =10865.778839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.107 4.107 12 C -0.137 4.137 13 C 0.515 3.485 14 O -0.534 6.534 15 N -0.621 5.621 16 C 0.103 3.897 17 C -0.135 4.135 18 C -0.110 4.110 19 C -0.125 4.125 20 H 0.104 0.896 21 C 0.526 3.474 22 N -0.855 5.855 23 O -0.538 6.538 24 C 0.131 3.869 25 H 0.262 0.738 26 H 0.011 0.989 27 H 0.015 0.985 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.401 0.599 41 H 0.402 0.598 42 H 0.075 0.925 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.170 -21.390 5.031 31.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.139 4.139 11 C -0.145 4.145 12 C -0.177 4.177 13 C 0.305 3.695 14 O -0.409 6.409 15 N -0.356 5.356 16 C -0.020 4.020 17 C -0.173 4.173 18 C -0.148 4.148 19 C -0.147 4.147 20 H 0.122 0.878 21 C 0.310 3.690 22 N -0.419 5.419 23 O -0.414 6.414 24 C 0.007 3.993 25 H 0.072 0.928 26 H 0.030 0.970 27 H 0.034 0.966 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.230 0.770 41 H 0.233 0.767 42 H 0.093 0.907 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 22.556 -20.256 4.369 30.629 hybrid contribution 0.536 0.450 0.455 0.835 sum 23.092 -19.806 4.824 30.802 Atomic orbital electron populations 1.69922 1.06303 1.26809 1.51530 1.25044 0.94737 0.99233 0.94628 0.86773 0.80433 0.83535 0.78558 1.20313 1.21483 1.18886 1.21183 0.89668 0.94359 1.50460 0.91114 1.19579 0.96889 0.92523 0.96330 1.21468 0.91681 0.99911 1.00882 1.21500 0.97197 0.92866 1.02940 1.21803 0.90199 1.01685 1.03991 1.21117 0.90913 0.82651 0.74857 1.90703 1.70470 1.30912 1.48835 1.48193 1.06220 1.06291 1.74870 1.21713 0.97555 0.84061 0.98699 1.21864 0.95092 1.00842 0.99540 1.21525 0.95842 0.94363 1.03043 1.21720 0.91412 0.98959 1.02610 0.87844 1.20489 0.90016 0.77416 0.81093 1.43876 1.11862 1.55090 1.31090 1.90783 1.69168 1.46461 1.34971 1.21266 0.79573 1.01750 0.96673 0.92835 0.97040 0.96633 0.92874 0.92872 0.91757 0.91818 0.89007 0.88954 0.88790 0.91139 0.89864 0.90922 0.90940 0.91106 0.77018 0.76745 0.90709 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.46 13.96 55.43 0.77 -27.69 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.51 27.47 -169.99 -4.67 17.84 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 7 C -0.52 -15.11 9.66 -34.44 -0.33 -15.45 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 10 C -0.10 -2.00 5.15 -26.74 -0.14 -2.14 16 11 C -0.11 -1.82 4.50 -26.74 -0.12 -1.94 16 12 C -0.14 -1.74 4.05 -27.88 -0.11 -1.85 16 13 C 0.52 7.16 7.70 -10.98 -0.08 7.07 16 14 O -0.53 -9.72 15.39 5.56 0.09 -9.64 16 15 N -0.62 -6.47 2.98 -173.01 -0.52 -6.98 16 16 C 0.10 0.69 6.31 -3.93 -0.02 0.66 16 17 C -0.14 -0.63 6.07 -26.83 -0.16 -0.79 16 18 C -0.11 -0.51 5.08 -26.69 -0.14 -0.64 16 19 C -0.12 -0.90 2.68 -91.63 -0.25 -1.15 16 20 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 21 C 0.53 4.40 7.43 -10.98 -0.08 4.32 16 22 N -0.86 -3.63 8.76 31.22 0.27 -3.36 16 23 O -0.54 -7.03 16.76 5.56 0.09 -6.94 16 24 C 0.13 1.39 5.07 -3.69 -0.02 1.37 16 25 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 27 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 31 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 32 H 0.09 0.98 7.68 -51.93 -0.40 0.58 16 33 H 0.09 1.01 7.95 -51.93 -0.41 0.60 16 34 H 0.09 0.57 5.94 -51.92 -0.31 0.26 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.18 7.54 -51.93 -0.39 -0.21 16 40 H 0.40 0.54 8.24 -40.82 -0.34 0.20 16 41 H 0.40 1.42 8.93 -40.82 -0.36 1.06 16 42 H 0.07 0.81 7.96 -51.93 -0.41 0.39 16 43 H 0.10 1.35 7.00 -51.92 -0.36 0.98 16 LS Contribution 344.78 15.07 5.20 5.20 Total: -1.00 -37.35 344.78 -7.57 -44.92 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -7.14 Total: -4.13 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -1.67 Total: -9.22 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.53 Total: -38.03 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.18 Total: -16.58 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.35 -7.57 -44.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588147371.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.687 kcal (2) G-P(sol) polarization free energy of solvation -37.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds