Wall clock time and date at job start Tue Mar 31 2020 05:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00190 * 2 1 4 4 H 1.48505 * 109.47032 * 269.99566 * 3 2 1 5 5 H 1.48498 * 109.47207 * 29.99353 * 3 2 1 6 6 H 1.48501 * 109.47227 * 149.99820 * 3 2 1 7 7 C 1.37886 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99461 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00372 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47381 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47217 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46886 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47050 * 180.02562 * 12 11 10 14 14 O 1.21285 * 120.00087 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00245 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00006 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.47106 * 179.97438 * 16 15 13 18 18 O 1.21279 * 119.99507 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00020 * 179.97438 * 17 16 15 20 20 C 1.46496 * 119.99544 * 180.02562 * 19 17 16 21 21 C 1.53005 * 109.47059 * 180.02562 * 20 19 17 22 22 C 1.53004 * 117.49759 * 243.62370 * 21 20 19 23 23 C 1.52996 * 117.50145 * 175.00164 * 21 20 19 24 24 H 0.96997 * 120.00191 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47545 * 59.99578 * 9 7 2 26 26 H 1.09004 * 109.46897 * 299.99900 * 9 7 2 27 27 H 1.09001 * 109.47364 * 59.99175 * 10 9 7 28 28 H 1.09004 * 109.46785 * 299.99676 * 10 9 7 29 29 H 1.08992 * 109.47056 * 59.99458 * 11 10 9 30 30 H 1.08996 * 109.46698 * 299.99574 * 11 10 9 31 31 H 1.08998 * 109.46879 * 59.99409 * 12 11 10 32 32 H 1.09001 * 109.46611 * 299.99697 * 12 11 10 33 33 H 0.96998 * 119.99803 * 359.97438 * 15 13 12 34 34 H 1.09001 * 109.47001 * 59.99676 * 16 15 13 35 35 H 1.09000 * 109.47574 * 299.99892 * 16 15 13 36 36 H 0.96994 * 119.99756 * 0.02562 * 19 17 16 37 37 H 1.08996 * 109.47366 * 299.99598 * 20 19 17 38 38 H 1.08992 * 109.47635 * 60.00246 * 20 19 17 39 39 H 1.09001 * 115.54850 * 29.32521 * 21 20 19 40 40 H 1.08996 * 117.49992 * 359.97438 * 22 21 20 41 41 H 1.09001 * 117.49660 * 145.01544 * 22 21 20 42 42 H 1.09007 * 117.49716 * 214.97980 * 23 21 20 43 43 H 1.08993 * 117.49910 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5516 -2.6366 0.0009 12 6 6.0615 -4.0791 0.0015 13 6 7.5685 -4.0792 0.0020 14 8 8.1749 -3.0288 0.0016 15 7 8.2424 -5.2463 0.0020 16 6 9.7074 -5.2463 0.0020 17 6 10.2097 -6.6672 0.0027 18 8 9.4216 -7.5889 0.0026 19 7 11.5348 -6.9134 0.0023 20 6 12.0230 -8.2946 0.0023 21 6 13.5531 -8.2947 0.0024 22 6 14.2596 -8.8977 -1.2134 23 6 14.2595 -9.6466 0.1207 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6800 0.8911 26 1 3.8752 -0.6805 -0.8889 27 1 3.6585 -3.1503 -0.8892 28 1 3.6579 -3.1506 0.8908 29 1 5.9149 -2.1227 0.8908 30 1 5.9148 -2.1227 -0.8890 31 1 5.6981 -4.5933 -0.8883 32 1 5.6982 -4.5925 0.8917 33 1 7.7574 -6.0864 0.0020 34 1 10.0707 -4.7324 0.8920 35 1 10.0708 -4.7325 -0.8879 36 1 12.1651 -6.1761 0.0019 37 1 11.6601 -8.8083 0.8925 38 1 11.6595 -8.8086 -0.8874 39 1 14.0232 -7.4373 0.4841 40 1 13.6344 -9.2947 -2.0131 41 1 15.1947 -8.4369 -1.5319 42 1 15.1946 -9.6786 0.6801 43 1 13.6343 -10.5360 0.1989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588163357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:36 Heat of formation + Delta-G solvation = -74.876236 kcal Electronic energy + Delta-G solvation = -20594.128307 eV Core-core repulsion = 17253.214220 eV Total energy + Delta-G solvation = -3340.914087 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.54915 -39.42276 -38.09047 -35.14141 -34.79045 -34.48108 -32.55729 -30.47049 -29.13676 -26.86677 -25.32158 -23.00687 -22.09286 -21.65571 -20.86794 -20.31759 -19.98574 -17.92932 -17.20718 -16.61585 -16.46376 -16.30092 -16.01280 -15.59293 -15.06819 -14.65337 -14.42461 -14.16775 -13.95561 -13.75504 -13.36529 -12.91130 -12.61803 -12.21651 -12.14750 -12.08095 -12.03911 -11.72199 -11.18212 -11.07982 -10.86301 -10.70597 -10.50601 -10.41512 -10.01532 -9.80127 -9.64859 -9.61364 -9.40982 -9.31332 -9.08802 -8.46705 -5.97817 -3.95110 2.06519 2.36351 2.64349 3.09509 3.24341 3.37270 3.44136 3.50288 3.98519 4.13619 4.26816 4.35962 4.52503 4.57375 4.81222 4.92490 5.00905 5.05097 5.06849 5.14805 5.28066 5.28683 5.34406 5.37771 5.49002 5.49905 5.81418 5.84745 6.07329 6.12394 6.19344 6.45252 6.72205 6.85557 6.87524 7.02941 7.37062 7.41803 7.54479 7.61067 7.87750 8.16674 8.61476 9.07515 9.65585 11.15729 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.064120 B = 0.001907 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.577452 B =14677.148951 C =14998.980707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.103 4.103 11 C -0.106 4.106 12 C -0.138 4.138 13 C 0.516 3.484 14 O -0.539 6.539 15 N -0.727 5.727 16 C 0.100 3.900 17 C 0.510 3.490 18 O -0.535 6.535 19 N -0.725 5.725 20 C 0.150 3.850 21 C -0.174 4.174 22 C -0.176 4.176 23 C -0.170 4.170 24 H 0.262 0.738 25 H 0.016 0.984 26 H 0.011 0.989 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.412 0.588 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.405 0.595 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.039 -18.812 -0.270 36.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.141 4.141 11 C -0.144 4.144 12 C -0.177 4.177 13 C 0.304 3.696 14 O -0.415 6.415 15 N -0.384 5.384 16 C -0.027 4.027 17 C 0.296 3.704 18 O -0.411 6.411 19 N -0.378 5.378 20 C 0.027 3.973 21 C -0.192 4.192 22 C -0.213 4.213 23 C -0.207 4.207 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.029 0.971 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.250 0.750 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.240 0.760 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.130 0.870 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 30.748 -18.615 -0.268 35.945 hybrid contribution 0.588 0.799 -0.016 0.992 sum 31.336 -17.816 -0.284 36.047 Atomic orbital electron populations 1.69919 1.06310 1.26793 1.51533 1.25043 0.94723 0.99204 0.94633 0.86773 0.80436 0.83567 0.78510 1.20343 1.21476 1.18901 1.21200 0.89707 0.94397 1.50440 0.91093 1.19577 0.96883 0.92526 0.96302 1.21485 0.91697 0.99903 1.01023 1.21488 0.97226 0.92768 1.02896 1.21769 0.89653 1.01790 1.04528 1.21118 0.91043 0.82673 0.74746 1.90701 1.70592 1.31318 1.48910 1.45850 1.05206 1.10302 1.77082 1.20995 0.83515 0.93363 1.04856 1.20646 0.82504 0.91467 0.75785 1.90722 1.55122 1.46070 1.49213 1.45865 1.06904 1.09198 1.75828 1.20917 0.90972 0.82732 1.02683 1.22462 0.93773 0.98767 1.04199 1.23115 1.02680 1.03830 0.91709 1.22969 1.02399 0.94805 1.00531 0.92843 0.96613 0.97061 0.92812 0.92781 0.91772 0.91772 0.88755 0.88761 0.75048 0.88399 0.88386 0.76020 0.90798 0.91033 0.87018 0.88405 0.88468 0.88295 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.61 13.96 55.43 0.77 -27.84 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.51 27.47 -169.99 -4.67 17.84 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 7 C -0.52 -15.28 9.66 -34.44 -0.33 -15.61 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.02 -0.38 4.04 -27.89 -0.11 -0.50 16 10 C -0.10 -2.07 5.15 -26.73 -0.14 -2.21 16 11 C -0.11 -1.80 4.50 -26.73 -0.12 -1.92 16 12 C -0.14 -1.80 5.70 -27.88 -0.16 -1.95 16 13 C 0.52 6.96 7.83 -10.99 -0.09 6.88 16 14 O -0.54 -9.13 15.98 5.55 0.09 -9.04 16 15 N -0.73 -7.73 5.53 -61.47 -0.34 -8.07 16 16 C 0.10 0.84 6.15 -5.19 -0.03 0.81 16 17 C 0.51 4.29 7.90 -10.98 -0.09 4.20 16 18 O -0.53 -6.37 15.67 5.56 0.09 -6.28 16 19 N -0.73 -3.97 5.56 -60.30 -0.33 -4.31 16 20 C 0.15 0.82 5.96 -4.04 -0.02 0.80 16 21 C -0.17 -0.64 5.85 -90.62 -0.53 -1.17 16 22 C -0.18 -0.63 10.18 -26.73 -0.27 -0.90 16 23 C -0.17 -0.58 10.25 -26.73 -0.27 -0.86 16 24 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 25 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 26 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 30 H 0.06 1.14 8.10 -51.93 -0.42 0.71 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.41 4.08 7.44 -40.82 -0.30 3.78 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.41 1.16 8.40 -40.82 -0.34 0.82 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.46 7.88 -51.93 -0.41 0.05 16 39 H 0.11 0.31 8.04 -51.93 -0.42 -0.10 16 40 H 0.10 0.36 8.03 -51.93 -0.42 -0.05 16 41 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -36.03 362.02 -8.52 -44.55 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.31 Total: -1.73 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -2.26 Total: -10.57 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.10 Total: -40.22 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.18 Total: -15.32 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.03 -8.52 -44.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588163357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.328 kcal (2) G-P(sol) polarization free energy of solvation -36.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds