Wall clock time and date at job start Tue Mar 31 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 O 1.21278 * 119.99985 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00161 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00271 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47194 * 180.02562 * 16 15 13 18 18 H 1.09004 * 109.29870 * 65.41991 * 17 16 15 19 19 C 1.52919 * 109.30022 * 184.99951 * 17 16 15 20 20 C 1.53349 * 108.67640 * 171.06375 * 19 17 16 21 21 C 1.53072 * 108.42735 * 292.47764 * 20 19 17 22 22 C 1.50170 * 109.89261 * 48.89299 * 21 20 19 23 23 O 1.21284 * 118.24702 * 162.40037 * 22 21 20 24 24 N 1.33355 * 123.51216 * 342.42092 * 22 21 20 25 25 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 27 27 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 28 28 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 29 29 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 30 30 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 31 31 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 32 32 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 33 33 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 34 34 H 0.97005 * 119.99463 * 0.02562 * 15 13 12 35 35 H 1.08998 * 109.47245 * 300.00900 * 16 15 13 36 36 H 1.09002 * 109.47021 * 60.00278 * 16 15 13 37 37 H 1.08992 * 109.60746 * 290.82578 * 19 17 16 38 38 H 1.09006 * 109.60110 * 51.31259 * 19 17 16 39 39 H 1.09002 * 109.66765 * 52.20305 * 20 19 17 40 40 H 1.08996 * 109.67647 * 172.69781 * 20 19 17 41 41 H 1.08995 * 109.40463 * 169.02807 * 21 20 19 42 42 H 1.09000 * 109.39616 * 288.85154 * 21 20 19 43 43 H 0.96996 * 117.94657 * 182.22095 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0018 13 6 1.7212 -7.4551 0.0031 14 8 0.5084 -7.4551 0.0030 15 7 2.3951 -8.6223 0.0033 16 6 1.6626 -9.8910 0.0051 17 6 2.6569 -11.0539 0.0056 18 1 3.2169 -11.0486 0.9408 19 6 1.8924 -12.3725 -0.1183 20 6 2.9011 -13.5057 -0.3416 21 6 3.5427 -13.3180 -1.7187 22 6 4.0085 -11.8991 -1.8762 23 8 4.8137 -11.6528 -2.7491 24 7 3.5844 -10.8953 -1.1075 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6042 -0.8894 30 1 0.8534 -5.0451 -0.8886 31 1 0.8541 -5.0445 0.8914 32 1 3.1014 -6.0927 -0.8882 33 1 3.1013 -6.0918 0.8917 34 1 3.3651 -8.6222 0.0030 35 1 1.0368 -9.9480 0.8957 36 1 1.0351 -9.9495 -0.8842 37 1 1.3315 -12.5575 0.7977 38 1 1.2079 -12.3202 -0.9649 39 1 3.6705 -13.4694 0.4296 40 1 2.3881 -14.4666 -0.3031 41 1 4.3941 -13.9915 -1.8164 42 1 2.8104 -13.5455 -2.4933 43 1 3.9138 -10.0038 -1.3013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588165718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:15 Heat of formation + Delta-G solvation = -110.883548 kcal Electronic energy + Delta-G solvation = -21320.998046 eV Core-core repulsion = 17978.522565 eV Total energy + Delta-G solvation = -3342.475481 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.94122 -39.66197 -37.47215 -35.13595 -34.74944 -33.21518 -32.62239 -31.02478 -29.68093 -27.16575 -25.44063 -23.58348 -22.94534 -22.08776 -20.36634 -19.98161 -19.71634 -17.91474 -16.86312 -16.78694 -16.34477 -16.06585 -15.76602 -15.62437 -14.83099 -14.56637 -14.42659 -14.25478 -14.09175 -13.73577 -13.28043 -12.94694 -12.62345 -12.28075 -12.06650 -11.93782 -11.70065 -11.63527 -11.59087 -11.55491 -10.98167 -10.54779 -10.50522 -10.41468 -10.19762 -9.90539 -9.61652 -9.60261 -9.35125 -9.22557 -8.98031 -8.29911 -5.94723 -3.97201 2.22336 2.58707 2.67778 3.05639 3.34591 3.40563 3.43782 3.91757 4.05367 4.09239 4.22974 4.49327 4.50650 4.61066 4.80447 4.83126 5.02985 5.12458 5.24037 5.28675 5.30351 5.32168 5.36779 5.40654 5.41837 5.58725 5.83062 6.09461 6.12743 6.29239 6.29922 6.53790 6.83370 6.84938 7.01020 7.18994 7.26295 7.74550 7.77036 7.90350 8.06566 8.14830 8.48428 9.10485 9.66407 11.16590 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040291 B = 0.002212 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.784562 B =12656.052559 C =13132.726625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.140 4.140 13 C 0.514 3.486 14 O -0.531 6.531 15 N -0.743 5.743 16 C 0.107 3.893 17 C 0.130 3.870 18 H 0.085 0.915 19 C -0.132 4.132 20 C -0.123 4.123 21 C -0.137 4.137 22 C 0.520 3.480 23 O -0.556 6.556 24 N -0.717 5.717 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.398 0.602 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.364 -30.246 1.806 30.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.302 3.698 14 O -0.406 6.406 15 N -0.398 5.398 16 C -0.018 4.018 17 C 0.024 3.976 18 H 0.103 0.897 19 C -0.170 4.170 20 C -0.160 4.160 21 C -0.176 4.176 22 C 0.307 3.693 23 O -0.434 6.434 24 N -0.371 5.371 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.232 0.768 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 5.640 -30.229 1.406 30.783 hybrid contribution 0.955 1.302 -0.002 1.615 sum 6.595 -28.927 1.404 29.703 Atomic orbital electron populations 1.69977 1.06039 1.26500 1.50957 1.25050 0.94857 0.99250 0.95480 0.86604 0.79808 0.83574 0.78053 1.20707 1.21264 1.19929 1.21282 0.92981 0.91196 1.50364 0.92756 1.19097 0.94066 0.91285 0.97312 1.21649 0.99084 0.93979 1.00098 1.21455 0.97002 0.92712 1.02967 1.21814 1.00156 0.91874 1.04104 1.21135 0.88457 0.85467 0.74761 1.90719 1.14206 1.87584 1.48091 1.46089 1.10110 1.05746 1.77877 1.21735 0.94366 0.81951 1.03718 1.21289 0.90637 0.95663 0.89979 0.89728 1.21896 0.98222 0.92521 1.04348 1.21657 0.98753 0.99237 0.96399 1.21673 1.03174 0.93283 0.99501 1.20231 0.80578 0.87935 0.80515 1.90795 1.34286 1.84450 1.33851 1.45663 1.47198 1.11307 1.32934 0.93053 0.96600 0.96579 0.93466 0.93451 0.91792 0.91787 0.89030 0.89031 0.76802 0.89873 0.90714 0.89071 0.90233 0.90889 0.90034 0.88037 0.88059 0.76499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.29 55.43 0.74 -26.88 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.11 -2.27 5.15 -26.74 -0.14 -2.41 16 11 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 12 C -0.14 -1.77 5.70 -27.88 -0.16 -1.93 16 13 C 0.51 6.61 7.83 -10.98 -0.09 6.52 16 14 O -0.53 -9.16 15.98 5.56 0.09 -9.07 16 15 N -0.74 -6.23 5.17 -60.30 -0.31 -6.54 16 16 C 0.11 0.75 5.35 -4.05 -0.02 0.72 16 17 C 0.13 0.58 3.24 -68.38 -0.22 0.36 16 18 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 19 C -0.13 -0.41 5.30 -26.59 -0.14 -0.55 16 20 C -0.12 -0.35 6.03 -26.51 -0.16 -0.51 16 21 C -0.14 -0.68 6.03 -28.10 -0.17 -0.85 16 22 C 0.52 4.48 7.71 -11.87 -0.09 4.39 16 23 O -0.56 -7.46 17.78 5.55 0.10 -7.36 16 24 N -0.72 -4.74 5.11 -54.86 -0.28 -5.02 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.40 2.31 7.35 -40.82 -0.30 2.01 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 37 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 38 H 0.08 0.29 8.09 -51.93 -0.42 -0.13 16 39 H 0.07 0.20 8.13 -51.93 -0.42 -0.22 16 40 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.40 2.77 7.16 -40.82 -0.29 2.48 16 LS Contribution 353.39 15.07 5.33 5.33 Total: -1.00 -36.92 353.39 -8.53 -45.46 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -7.31 Total: -3.24 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -1.86 Total: -9.66 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.14 Total: -38.44 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.19 Total: -16.43 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.92 -8.53 -45.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588165718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.426 kcal (2) G-P(sol) polarization free energy of solvation -36.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds