Wall clock time and date at job start Tue Mar 31 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 O 1.21278 * 119.99985 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00161 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00271 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47194 * 180.02562 * 16 15 13 18 18 H 1.09004 * 109.29870 * 65.41991 * 17 16 15 19 19 C 1.52919 * 109.30022 * 184.99951 * 17 16 15 20 20 C 1.53349 * 108.67640 * 171.06375 * 19 17 16 21 21 C 1.53072 * 108.42735 * 292.47764 * 20 19 17 22 22 C 1.50170 * 109.89261 * 48.89299 * 21 20 19 23 23 O 1.21284 * 118.24702 * 162.40037 * 22 21 20 24 24 N 1.33355 * 123.51216 * 342.42092 * 22 21 20 25 25 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 27 27 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 28 28 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 29 29 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 30 30 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 31 31 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 32 32 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 33 33 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 34 34 H 0.97005 * 119.99463 * 0.02562 * 15 13 12 35 35 H 1.08998 * 109.47245 * 300.00900 * 16 15 13 36 36 H 1.09002 * 109.47021 * 60.00278 * 16 15 13 37 37 H 1.08992 * 109.60746 * 290.82578 * 19 17 16 38 38 H 1.09006 * 109.60110 * 51.31259 * 19 17 16 39 39 H 1.09002 * 109.66765 * 52.20305 * 20 19 17 40 40 H 1.08996 * 109.67647 * 172.69781 * 20 19 17 41 41 H 1.08995 * 109.40463 * 169.02807 * 21 20 19 42 42 H 1.09000 * 109.39616 * 288.85154 * 21 20 19 43 43 H 0.96996 * 117.94657 * 182.22095 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0018 13 6 1.7212 -7.4551 0.0031 14 8 0.5084 -7.4551 0.0030 15 7 2.3951 -8.6223 0.0033 16 6 1.6626 -9.8910 0.0051 17 6 2.6569 -11.0539 0.0056 18 1 3.2169 -11.0486 0.9408 19 6 1.8924 -12.3725 -0.1183 20 6 2.9011 -13.5057 -0.3416 21 6 3.5427 -13.3180 -1.7187 22 6 4.0085 -11.8991 -1.8762 23 8 4.8137 -11.6528 -2.7491 24 7 3.5844 -10.8953 -1.1075 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6042 -0.8894 30 1 0.8534 -5.0451 -0.8886 31 1 0.8541 -5.0445 0.8914 32 1 3.1014 -6.0927 -0.8882 33 1 3.1013 -6.0918 0.8917 34 1 3.3651 -8.6222 0.0030 35 1 1.0368 -9.9480 0.8957 36 1 1.0351 -9.9495 -0.8842 37 1 1.3315 -12.5575 0.7977 38 1 1.2079 -12.3202 -0.9649 39 1 3.6705 -13.4694 0.4296 40 1 2.3881 -14.4666 -0.3031 41 1 4.3941 -13.9915 -1.8164 42 1 2.8104 -13.5455 -2.4933 43 1 3.9138 -10.0038 -1.3013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588165718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:15 Heat of formation + Delta-G solvation = -138.065204 kcal Electronic energy + Delta-G solvation = -21322.176731 eV Core-core repulsion = 17978.522565 eV Total energy + Delta-G solvation = -3343.654166 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.55087 -40.63457 -38.16244 -36.66005 -35.63491 -34.61112 -33.74067 -31.94327 -31.04609 -28.12871 -26.85617 -24.48977 -23.65915 -23.22249 -21.78255 -21.26938 -20.12867 -18.58389 -18.42521 -17.69978 -17.42796 -17.08616 -16.74683 -16.50805 -16.26813 -15.73508 -15.24690 -15.06089 -14.66527 -14.53677 -14.49055 -13.99236 -13.82027 -13.58880 -13.37604 -13.27177 -12.82231 -12.71140 -12.38471 -12.30711 -12.16086 -12.13122 -11.91099 -11.83787 -11.38093 -11.36477 -11.17592 -10.88972 -10.74159 -10.55384 -10.20009 -10.17296 -8.19151 -6.31230 1.39959 1.42196 1.53266 1.58380 1.62460 1.99303 2.38191 2.42151 3.13420 3.48390 3.62493 3.73923 3.86368 3.93034 4.06006 4.14311 4.16958 4.23751 4.51689 4.58791 4.63953 4.68926 4.76183 4.85033 4.87673 4.89845 4.96341 5.06793 5.11917 5.19294 5.31623 5.32811 5.35099 5.41113 5.57026 5.72336 5.77927 5.87888 6.25032 6.28336 6.45333 6.87229 7.14820 7.22651 7.38282 8.93033 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040291 B = 0.002212 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.784562 B =12656.052559 C =13132.726625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.096 4.096 12 C -0.131 4.131 13 C 0.514 3.486 14 O -0.584 6.584 15 N -0.723 5.723 16 C 0.106 3.894 17 C 0.137 3.863 18 H 0.108 0.892 19 C -0.132 4.132 20 C -0.114 4.114 21 C -0.134 4.134 22 C 0.514 3.486 23 O -0.613 6.613 24 N -0.712 5.712 25 H 0.263 0.737 26 H -0.016 1.016 27 H -0.014 1.014 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.413 0.587 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.327 -31.458 2.826 32.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.019 4.019 10 C -0.134 4.134 11 C -0.134 4.134 12 C -0.171 4.171 13 C 0.302 3.698 14 O -0.463 6.463 15 N -0.377 5.377 16 C -0.018 4.018 17 C 0.033 3.967 18 H 0.126 0.874 19 C -0.170 4.170 20 C -0.152 4.152 21 C -0.174 4.174 22 C 0.303 3.697 23 O -0.496 6.496 24 N -0.364 5.364 25 H 0.071 0.929 26 H 0.002 0.998 27 H 0.004 0.996 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.251 0.749 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.130 0.870 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 7.636 -31.482 2.457 32.488 hybrid contribution 0.290 1.656 -0.310 1.710 sum 7.926 -29.826 2.147 30.936 Atomic orbital electron populations 1.70131 1.08028 1.27743 1.51881 1.26103 0.95817 1.03756 0.94829 0.85378 0.78678 0.78068 0.78492 1.19789 1.20889 1.18319 1.21755 0.93726 0.92251 1.50204 0.91631 1.19062 0.94711 0.93804 0.94333 1.21450 0.97821 0.92846 1.01270 1.21242 0.97505 0.93621 1.01062 1.21693 0.98997 0.89693 1.06688 1.21116 0.87730 0.86626 0.74331 1.90709 1.16359 1.88319 1.50924 1.45885 1.10943 1.05148 1.75754 1.21844 0.94905 0.81875 1.03202 1.21424 0.90012 0.95349 0.89946 0.87434 1.21956 0.98189 0.91585 1.05251 1.21646 0.98728 0.99950 0.94865 1.21721 1.03591 0.90748 1.01336 1.20907 0.79701 0.89493 0.79597 1.90764 1.37038 1.85470 1.36309 1.45740 1.46779 1.10915 1.32928 0.92851 0.99799 0.99571 0.91992 0.92272 0.94014 0.93628 0.86651 0.86123 0.74934 0.89441 0.92309 0.86996 0.90786 0.90215 0.88071 0.87719 0.87405 0.76911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.23 13.29 21.45 0.28 -58.94 16 2 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 3 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.54 -31.58 9.11 25.60 0.23 -31.34 16 8 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.02 0.99 4.97 29.84 0.15 1.14 16 10 C -0.10 -3.93 5.15 30.59 0.16 -3.77 16 11 C -0.10 -3.42 4.50 30.59 0.14 -3.28 16 12 C -0.13 -3.08 5.70 29.85 0.17 -2.91 16 13 C 0.51 12.68 7.83 87.66 0.69 13.36 16 14 O -0.58 -20.43 15.98 -3.02 -0.05 -20.47 16 15 N -0.72 -10.72 5.17 -463.07 -2.39 -13.11 16 16 C 0.11 1.30 5.35 86.38 0.46 1.76 16 17 C 0.14 0.89 3.24 45.10 0.15 1.03 16 18 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 19 C -0.13 -0.44 5.30 30.68 0.16 -0.28 16 20 C -0.11 -0.30 6.03 30.74 0.19 -0.11 16 21 C -0.13 -1.12 6.03 29.71 0.18 -0.94 16 22 C 0.51 8.46 7.71 87.71 0.68 9.14 16 23 O -0.61 -16.71 17.78 -3.04 -0.05 -16.77 16 24 N -0.71 -8.33 5.11 -446.64 -2.28 -10.61 16 25 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 26 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 27 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 31 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 32 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.41 3.66 7.35 -92.70 -0.68 2.97 16 35 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 0.95 8.12 -2.39 -0.02 0.94 16 37 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.07 0.37 8.09 -2.38 -0.02 0.35 16 39 H 0.08 0.15 8.13 -2.39 -0.02 0.13 16 40 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.40 4.96 7.16 -92.71 -0.66 4.29 16 Total: -1.00 -84.12 353.39 0.99 -83.12 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -0.35 Total: 5.90 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 3.81 Total: -16.21 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -4.39 Total: -82.67 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -0.10 Total: -37.24 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -84.12 0.99 -83.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588165718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.942 kcal (2) G-P(sol) polarization free energy of solvation -84.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds