Wall clock time and date at job start Tue Mar 31 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99770 * 2 1 4 4 H 1.48496 * 109.47117 * 269.99861 * 3 2 1 5 5 H 1.48501 * 109.47010 * 29.99932 * 3 2 1 6 6 H 1.48506 * 109.47147 * 149.99518 * 3 2 1 7 7 C 1.37880 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99566 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.46983 * 180.02562 * 16 15 13 18 18 H 1.09000 * 109.29953 * 295.00112 * 17 16 15 19 19 C 1.52921 * 109.30365 * 175.41637 * 17 16 15 20 20 C 1.53270 * 108.71465 * 188.73409 * 19 17 16 21 21 C 1.53072 * 108.24343 * 67.82237 * 20 19 17 22 22 C 1.50179 * 109.88997 * 311.02820 * 21 20 19 23 23 O 1.21279 * 118.24984 * 197.60593 * 22 21 20 24 24 N 1.33358 * 123.50544 * 17.58255 * 22 21 20 25 25 H 0.97000 * 120.00500 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 27 27 H 1.09001 * 109.46927 * 300.00378 * 9 7 2 28 28 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 29 29 H 1.09001 * 109.46832 * 300.00193 * 10 9 7 30 30 H 1.09002 * 109.47103 * 59.99753 * 11 10 9 31 31 H 1.08998 * 109.46862 * 300.00565 * 11 10 9 32 32 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 33 33 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 34 34 H 0.96995 * 120.00011 * 0.02562 * 15 13 12 35 35 H 1.09001 * 109.47487 * 300.00114 * 16 15 13 36 36 H 1.09002 * 109.47182 * 60.00342 * 16 15 13 37 37 H 1.08997 * 109.60753 * 308.69603 * 19 17 16 38 38 H 1.09003 * 109.59959 * 69.17759 * 19 17 16 39 39 H 1.08992 * 109.81988 * 308.10822 * 20 19 17 40 40 H 1.09003 * 109.73556 * 187.47666 * 20 19 17 41 41 H 1.08995 * 109.40081 * 190.90594 * 21 20 19 42 42 H 1.08992 * 109.40488 * 71.15368 * 21 20 19 43 43 H 0.97003 * 117.94206 * 177.75090 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0022 12 6 6.0616 -4.0789 0.0028 13 6 7.5686 -4.0789 0.0033 14 8 8.1750 -3.0285 0.0038 15 7 8.2425 -5.2461 0.0044 16 6 9.7075 -5.2460 0.0055 17 6 10.2176 -6.6885 0.0059 18 1 9.9270 -7.1730 0.9380 19 6 11.7425 -6.6855 -0.1082 20 6 12.2221 -8.1247 -0.3268 21 6 11.7525 -8.5815 -1.7102 22 6 10.2922 -8.2749 -1.8810 23 8 9.6850 -8.8460 -2.7618 24 7 9.6275 -7.4085 -1.1156 25 1 -0.4851 0.8400 -0.0004 26 1 3.8746 -0.6800 0.8912 27 1 3.8752 -0.6803 -0.8888 28 1 3.6587 -3.1501 -0.8893 29 1 3.6579 -3.1505 0.8907 30 1 5.9142 -2.1229 0.8927 31 1 5.9156 -2.1222 -0.8872 32 1 5.6990 -4.5929 -0.8875 33 1 5.6976 -4.5927 0.8925 34 1 7.7576 -6.0861 0.0044 35 1 10.0716 -4.7325 -0.8844 36 1 10.0701 -4.7318 0.8956 37 1 12.0450 -6.0644 -0.9514 38 1 12.1773 -6.2943 0.8116 39 1 11.7986 -8.7755 0.4380 40 1 13.3105 -8.1613 -0.2782 41 1 11.9110 -9.6552 -1.8101 42 1 12.3241 -8.0593 -2.4774 43 1 8.6927 -7.2470 -1.3182 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588165719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:18 Heat of formation + Delta-G solvation = -107.669587 kcal Electronic energy + Delta-G solvation = -21372.666261 eV Core-core repulsion = 18030.330148 eV Total energy + Delta-G solvation = -3342.336113 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.97280 -39.72366 -37.50789 -35.23862 -34.84025 -33.25204 -32.58825 -31.09516 -30.03583 -27.31103 -25.65267 -23.58794 -22.94956 -21.92375 -20.35966 -20.03466 -19.74918 -17.94515 -16.93986 -16.82952 -16.61607 -16.25832 -15.82000 -15.67661 -14.87979 -14.59675 -14.29070 -14.22845 -14.14699 -13.81507 -13.33275 -13.04247 -12.65350 -12.36493 -12.21032 -12.15350 -11.87850 -11.75895 -11.62905 -11.61759 -11.12366 -10.75149 -10.55169 -10.22219 -10.05397 -9.83472 -9.65487 -9.63057 -9.44186 -9.40787 -9.11888 -8.49136 -6.00214 -3.97733 2.20111 2.53564 2.62860 3.00885 3.35436 3.42352 3.48122 3.88730 4.02664 4.06269 4.20478 4.47499 4.50201 4.58183 4.74379 4.79992 4.99375 5.09439 5.18173 5.22484 5.25567 5.27612 5.31884 5.34601 5.37560 5.55970 5.74539 6.01089 6.04119 6.13503 6.27090 6.39735 6.66991 6.80670 6.82431 6.98446 7.19258 7.37889 7.50668 7.74813 7.84920 8.08047 8.58550 9.04754 9.63027 11.13246 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039306 B = 0.002317 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.186009 B =12079.643812 C =12512.975119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.103 4.103 11 C -0.106 4.106 12 C -0.140 4.140 13 C 0.515 3.485 14 O -0.533 6.533 15 N -0.743 5.743 16 C 0.107 3.893 17 C 0.130 3.870 18 H 0.085 0.915 19 C -0.132 4.132 20 C -0.123 4.123 21 C -0.137 4.137 22 C 0.520 3.480 23 O -0.555 6.555 24 N -0.717 5.717 25 H 0.262 0.738 26 H 0.015 0.985 27 H 0.011 0.989 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.398 0.602 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.737 -18.223 1.856 33.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.144 4.144 12 C -0.180 4.180 13 C 0.302 3.698 14 O -0.408 6.408 15 N -0.397 5.397 16 C -0.018 4.018 17 C 0.024 3.976 18 H 0.103 0.897 19 C -0.170 4.170 20 C -0.160 4.160 21 C -0.177 4.177 22 C 0.308 3.692 23 O -0.433 6.433 24 N -0.371 5.371 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.233 0.767 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 27.959 -17.664 1.453 33.104 hybrid contribution -0.251 0.614 -0.019 0.663 sum 27.708 -17.050 1.433 32.566 Atomic orbital electron populations 1.69922 1.06296 1.26820 1.51462 1.25052 0.94749 0.99243 0.94636 0.86766 0.80405 0.83543 0.78532 1.20323 1.21460 1.18917 1.21183 0.89660 0.94382 1.50502 0.91108 1.19578 0.96924 0.92487 0.96308 1.21477 0.91647 0.99951 1.00967 1.21483 0.97278 0.92753 1.02903 1.21795 0.89939 1.01901 1.04338 1.21112 0.90969 0.82945 0.74740 1.90713 1.70627 1.31220 1.48263 1.46078 1.06670 1.09235 1.77744 1.21739 0.80972 0.95348 1.03704 1.21287 0.94717 0.91702 0.89855 0.89684 1.21884 0.92763 0.98010 1.04348 1.21648 1.02087 0.95949 0.96357 1.21679 0.92181 1.04374 0.99432 1.20230 0.90157 0.78229 0.80630 1.90795 1.68711 1.50421 1.33382 1.45661 1.15098 1.43879 1.32491 0.92821 0.96622 0.97063 0.92833 0.92824 0.91781 0.91792 0.88870 0.88853 0.76722 0.90722 0.89863 0.90221 0.89124 0.90846 0.90024 0.88041 0.88061 0.76504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.45 13.96 55.43 0.77 -27.68 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.39 27.47 -169.99 -4.67 17.72 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 7 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16 10 C -0.10 -2.01 5.15 -26.74 -0.14 -2.14 16 11 C -0.11 -1.75 4.50 -26.74 -0.12 -1.87 16 12 C -0.14 -1.67 5.70 -27.88 -0.16 -1.83 16 13 C 0.51 6.26 7.83 -10.98 -0.09 6.17 16 14 O -0.53 -8.76 15.98 5.56 0.09 -8.67 16 15 N -0.74 -5.84 5.17 -60.30 -0.31 -6.15 16 16 C 0.11 0.70 5.34 -4.04 -0.02 0.68 16 17 C 0.13 0.54 3.24 -68.38 -0.22 0.32 16 18 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 19 C -0.13 -0.38 5.28 -26.63 -0.14 -0.52 16 20 C -0.12 -0.32 6.04 -26.55 -0.16 -0.48 16 21 C -0.14 -0.66 6.02 -28.10 -0.17 -0.83 16 22 C 0.52 4.37 7.71 -11.87 -0.09 4.28 16 23 O -0.56 -7.35 17.78 5.56 0.10 -7.25 16 24 N -0.72 -4.55 5.11 -54.85 -0.28 -4.83 16 25 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 27 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 31 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.40 2.14 7.39 -40.82 -0.30 1.84 16 35 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.26 8.09 -51.93 -0.42 -0.16 16 38 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.07 0.19 8.13 -51.93 -0.42 -0.24 16 40 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 41 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.40 2.66 7.20 -40.82 -0.29 2.36 16 LS Contribution 349.85 15.07 5.27 5.27 Total: -1.00 -37.23 349.85 -8.16 -45.39 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -7.28 Total: -3.46 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -1.85 Total: -10.35 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.18 Total: -38.65 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.19 Total: -15.92 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.67 Total: 17.72 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.23 -8.16 -45.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588165719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.280 kcal (2) G-P(sol) polarization free energy of solvation -37.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds