Wall clock time and date at job start Tue Mar 31 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99770 * 2 1 4 4 H 1.48496 * 109.47117 * 269.99861 * 3 2 1 5 5 H 1.48501 * 109.47010 * 29.99932 * 3 2 1 6 6 H 1.48506 * 109.47147 * 149.99518 * 3 2 1 7 7 C 1.37880 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99566 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.46983 * 180.02562 * 16 15 13 18 18 H 1.09000 * 109.29953 * 295.00112 * 17 16 15 19 19 C 1.52921 * 109.30365 * 175.41637 * 17 16 15 20 20 C 1.53270 * 108.71465 * 188.73409 * 19 17 16 21 21 C 1.53072 * 108.24343 * 67.82237 * 20 19 17 22 22 C 1.50179 * 109.88997 * 311.02820 * 21 20 19 23 23 O 1.21279 * 118.24984 * 197.60593 * 22 21 20 24 24 N 1.33358 * 123.50544 * 17.58255 * 22 21 20 25 25 H 0.97000 * 120.00500 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 27 27 H 1.09001 * 109.46927 * 300.00378 * 9 7 2 28 28 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 29 29 H 1.09001 * 109.46832 * 300.00193 * 10 9 7 30 30 H 1.09002 * 109.47103 * 59.99753 * 11 10 9 31 31 H 1.08998 * 109.46862 * 300.00565 * 11 10 9 32 32 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 33 33 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 34 34 H 0.96995 * 120.00011 * 0.02562 * 15 13 12 35 35 H 1.09001 * 109.47487 * 300.00114 * 16 15 13 36 36 H 1.09002 * 109.47182 * 60.00342 * 16 15 13 37 37 H 1.08997 * 109.60753 * 308.69603 * 19 17 16 38 38 H 1.09003 * 109.59959 * 69.17759 * 19 17 16 39 39 H 1.08992 * 109.81988 * 308.10822 * 20 19 17 40 40 H 1.09003 * 109.73556 * 187.47666 * 20 19 17 41 41 H 1.08995 * 109.40081 * 190.90594 * 21 20 19 42 42 H 1.08992 * 109.40488 * 71.15368 * 21 20 19 43 43 H 0.97003 * 117.94206 * 177.75090 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0022 12 6 6.0616 -4.0789 0.0028 13 6 7.5686 -4.0789 0.0033 14 8 8.1750 -3.0285 0.0038 15 7 8.2425 -5.2461 0.0044 16 6 9.7075 -5.2460 0.0055 17 6 10.2176 -6.6885 0.0059 18 1 9.9270 -7.1730 0.9380 19 6 11.7425 -6.6855 -0.1082 20 6 12.2221 -8.1247 -0.3268 21 6 11.7525 -8.5815 -1.7102 22 6 10.2922 -8.2749 -1.8810 23 8 9.6850 -8.8460 -2.7618 24 7 9.6275 -7.4085 -1.1156 25 1 -0.4851 0.8400 -0.0004 26 1 3.8746 -0.6800 0.8912 27 1 3.8752 -0.6803 -0.8888 28 1 3.6587 -3.1501 -0.8893 29 1 3.6579 -3.1505 0.8907 30 1 5.9142 -2.1229 0.8927 31 1 5.9156 -2.1222 -0.8872 32 1 5.6990 -4.5929 -0.8875 33 1 5.6976 -4.5927 0.8925 34 1 7.7576 -6.0861 0.0044 35 1 10.0716 -4.7325 -0.8844 36 1 10.0701 -4.7318 0.8956 37 1 12.0450 -6.0644 -0.9514 38 1 12.1773 -6.2943 0.8116 39 1 11.7986 -8.7755 0.4380 40 1 13.3105 -8.1613 -0.2782 41 1 11.9110 -9.6552 -1.8101 42 1 12.3241 -8.0593 -2.4774 43 1 8.6927 -7.2470 -1.3182 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588165719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:17 Heat of formation + Delta-G solvation = -135.500177 kcal Electronic energy + Delta-G solvation = -21373.873086 eV Core-core repulsion = 18030.330148 eV Total energy + Delta-G solvation = -3343.542938 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.55219 -40.62943 -38.16634 -36.69746 -35.63140 -34.60474 -33.74797 -32.14649 -31.21315 -28.27153 -26.87951 -24.31219 -23.59298 -23.12172 -21.74594 -21.26644 -20.13569 -18.85950 -18.57519 -17.69131 -17.43132 -17.09292 -16.75610 -16.35272 -16.24997 -15.76022 -15.27045 -15.11164 -14.77871 -14.61373 -14.49144 -14.05816 -13.83941 -13.71345 -13.49367 -13.39755 -12.84973 -12.71164 -12.35544 -12.32878 -12.07536 -11.90597 -11.84627 -11.75715 -11.52623 -11.35184 -11.26943 -10.91266 -10.76677 -10.76152 -10.19972 -10.16901 -8.30006 -6.33214 1.34713 1.35953 1.48912 1.58082 1.62928 1.99875 2.35622 2.38617 3.05230 3.48449 3.62442 3.73575 3.86125 3.92741 4.03340 4.14593 4.16788 4.23952 4.51513 4.57541 4.62005 4.65734 4.74659 4.78406 4.86447 4.89366 4.96147 5.06591 5.11560 5.14691 5.19687 5.26382 5.34250 5.38115 5.60316 5.65438 5.68424 5.72164 6.28080 6.29053 6.45350 6.74836 7.14642 7.22425 7.31545 8.86550 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039306 B = 0.002317 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.186009 B =12079.643812 C =12512.975119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.002 3.998 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.251 1.251 7 C -0.531 4.531 8 H 0.036 0.964 9 C -0.017 4.017 10 C -0.095 4.095 11 C -0.097 4.097 12 C -0.134 4.134 13 C 0.515 3.485 14 O -0.582 6.582 15 N -0.724 5.724 16 C 0.107 3.893 17 C 0.136 3.864 18 H 0.107 0.893 19 C -0.132 4.132 20 C -0.115 4.115 21 C -0.135 4.135 22 C 0.514 3.486 23 O -0.613 6.613 24 N -0.712 5.712 25 H 0.266 0.734 26 H 0.015 0.985 27 H 0.012 0.988 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.413 0.587 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.345 -18.690 2.875 35.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.773 3.227 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.175 1.175 7 C -0.569 4.569 8 H 0.054 0.946 9 C -0.055 4.055 10 C -0.132 4.132 11 C -0.136 4.136 12 C -0.174 4.174 13 C 0.303 3.697 14 O -0.461 6.461 15 N -0.378 5.378 16 C -0.017 4.017 17 C 0.032 3.968 18 H 0.125 0.875 19 C -0.170 4.170 20 C -0.152 4.152 21 C -0.174 4.174 22 C 0.303 3.697 23 O -0.496 6.496 24 N -0.364 5.364 25 H 0.075 0.925 26 H 0.033 0.967 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.250 0.750 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.130 0.870 39 H 0.098 0.902 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 30.591 -18.172 2.504 35.669 hybrid contribution -1.120 0.692 -0.325 1.356 sum 29.471 -17.479 2.179 34.334 Atomic orbital electron populations 1.70064 1.08139 1.28091 1.52866 1.26026 0.95656 1.03497 0.94309 0.85671 0.79410 0.78508 0.79147 1.19311 1.20710 1.17454 1.21550 0.92165 0.93178 1.49973 0.94562 1.19581 0.93846 0.95928 0.96114 1.21344 0.93893 0.96702 1.01284 1.21275 0.94679 0.95800 1.01806 1.21702 0.90046 0.99113 1.06541 1.21074 0.91021 0.83243 0.74331 1.90700 1.71407 1.33063 1.50937 1.45904 1.07480 1.08713 1.75736 1.21837 0.79804 0.96854 1.03252 1.21431 0.95722 0.89929 0.89720 0.87491 1.21940 0.91422 0.98308 1.05298 1.21639 1.03257 0.95555 0.94757 1.21725 0.89646 1.04753 1.01309 1.20907 0.91452 0.77621 0.79721 1.90765 1.70162 1.52786 1.35894 1.45740 1.14968 1.43153 1.32502 0.92523 0.96654 0.96973 0.92661 0.92393 0.92780 0.93095 0.86923 0.86395 0.75000 0.92229 0.89346 0.90705 0.87018 0.90245 0.88074 0.87814 0.87370 0.76929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 2 C 0.00 0.10 5.47 84.65 0.46 0.56 16 3 Si 0.95 46.04 27.47 68.60 1.88 47.93 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 5 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.25 -11.51 6.54 99.48 0.65 -10.86 16 7 C -0.53 -31.41 9.66 25.60 0.25 -31.16 16 8 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 9 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 10 C -0.09 -3.61 5.15 30.59 0.16 -3.46 16 11 C -0.10 -3.09 4.50 30.59 0.14 -2.95 16 12 C -0.13 -2.90 5.70 29.85 0.17 -2.73 16 13 C 0.52 11.64 7.83 87.66 0.69 12.33 16 14 O -0.58 -18.66 15.98 -3.03 -0.05 -18.71 16 15 N -0.72 -9.78 5.17 -463.06 -2.39 -12.18 16 16 C 0.11 1.17 5.34 86.38 0.46 1.63 16 17 C 0.14 0.77 3.24 45.11 0.15 0.92 16 18 H 0.11 0.25 8.14 -2.39 -0.02 0.24 16 19 C -0.13 -0.34 5.28 30.66 0.16 -0.18 16 20 C -0.11 -0.24 6.04 30.71 0.19 -0.06 16 21 C -0.13 -1.07 6.02 29.71 0.18 -0.89 16 22 C 0.51 8.25 7.71 87.71 0.68 8.93 16 23 O -0.61 -16.56 17.78 -3.02 -0.05 -16.61 16 24 N -0.71 -7.93 5.11 -446.64 -2.28 -10.21 16 25 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 26 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 27 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 28 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 31 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 32 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.12 1.99 8.14 -2.39 -0.02 1.98 16 34 H 0.41 3.30 7.39 -92.71 -0.69 2.62 16 35 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 37 H 0.07 0.31 8.09 -2.39 -0.02 0.29 16 38 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.08 0.12 8.13 -2.39 -0.02 0.10 16 40 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.39 4.76 7.20 -92.71 -0.67 4.09 16 Total: -1.00 -83.39 349.85 0.79 -82.60 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -0.41 Total: 5.47 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 3.79 Total: -17.77 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -4.38 Total: -82.91 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.10 Total: -35.32 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.88 Total: 47.93 kcal Total: -83.39 0.79 -82.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588165719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.899 kcal (2) G-P(sol) polarization free energy of solvation -83.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds