Wall clock time and date at job start Tue Mar 31 2020 06:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47188 * 179.97438 * 12 11 10 14 14 O 1.21282 * 120.00025 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00035 * 179.97438 * 13 12 11 16 16 C 1.46499 * 120.00217 * 180.02562 * 15 13 12 17 17 H 1.09005 * 109.62951 * 325.40263 * 16 15 13 18 18 C 1.53063 * 109.63448 * 205.00343 * 16 15 13 19 19 C 1.51797 * 110.74339 * 155.38219 * 18 16 15 20 20 C 1.51783 * 113.81015 * 66.80536 * 19 18 16 21 21 C 1.52987 * 110.88316 * 292.99944 * 20 19 18 22 22 N 1.47190 * 108.66488 * 86.46850 * 21 20 19 23 23 C 1.33379 * 120.42531 * 288.03724 * 22 21 20 24 24 O 1.21274 * 119.88721 * 180.29035 * 23 22 21 25 25 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 27 27 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 28 28 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 29 29 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 30 30 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 31 31 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 32 32 H 1.09000 * 109.47380 * 300.00763 * 12 11 10 33 33 H 1.09001 * 109.46997 * 60.00426 * 12 11 10 34 34 H 0.97002 * 119.99767 * 0.02562 * 15 13 12 35 35 H 1.08996 * 109.22345 * 275.70572 * 18 16 15 36 36 H 1.08998 * 109.22302 * 35.10043 * 18 16 15 37 37 H 1.08997 * 108.61202 * 187.92827 * 19 18 16 38 38 H 1.08997 * 108.61202 * 305.83194 * 19 18 16 39 39 H 1.09004 * 109.19298 * 53.35711 * 20 19 18 40 40 H 1.08999 * 109.19093 * 172.68152 * 20 19 18 41 41 H 1.08998 * 109.60333 * 206.22497 * 21 20 19 42 42 H 1.09004 * 109.60486 * 326.70979 * 21 20 19 43 43 H 0.96996 * 119.79057 * 108.04376 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 6 1.7213 -7.4551 -0.0018 14 8 0.5085 -7.4551 -0.0018 15 7 2.3952 -8.6222 -0.0029 16 6 1.6628 -9.8910 -0.0034 17 1 0.7480 -9.7860 0.5800 18 6 2.5374 -10.9900 0.6048 19 6 1.6803 -12.1076 1.1711 20 6 0.9169 -12.8885 0.1169 21 6 -0.1480 -12.0126 -0.5459 22 7 0.4720 -11.2814 -1.6628 23 6 1.3217 -10.2809 -1.4263 24 8 1.8229 -9.6816 -2.3539 25 1 -0.4851 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 2.8721 -3.6042 -0.8905 29 1 2.8721 -3.6043 0.8895 30 1 0.8535 -5.0450 0.8885 31 1 0.8542 -5.0446 -0.8914 32 1 3.1014 -6.0917 -0.8917 33 1 3.1014 -6.0927 0.8882 34 1 3.3652 -8.6222 -0.0032 35 1 3.1922 -11.3956 -0.1664 36 1 3.1447 -10.5644 1.4037 37 1 2.3240 -12.7973 1.7169 38 1 0.9629 -11.6762 1.8691 39 1 1.6144 -13.2414 -0.6428 40 1 0.4339 -13.7457 0.5859 41 1 -0.9552 -12.6406 -0.9230 42 1 -0.5428 -11.3032 0.1815 43 1 0.2611 -11.5285 -2.5768 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588282552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:20 Heat of formation + Delta-G solvation = -105.945632 kcal Electronic energy + Delta-G solvation = -21940.754584 eV Core-core repulsion = 18598.493227 eV Total energy + Delta-G solvation = -3342.261357 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.89382 -39.14518 -37.06572 -35.38272 -34.74158 -33.29051 -32.56232 -30.73686 -29.44424 -26.76691 -25.25277 -24.48658 -22.42073 -21.43091 -20.22641 -19.89039 -19.84240 -17.66163 -17.47712 -16.78735 -16.18411 -15.86980 -15.46224 -15.23946 -14.60435 -14.51938 -14.40007 -14.04034 -13.83876 -13.62952 -13.26011 -12.66845 -12.55572 -12.18926 -12.02800 -11.74066 -11.60911 -11.50334 -11.34972 -11.21620 -10.93702 -10.48075 -10.45229 -10.34558 -10.33690 -9.80074 -9.54614 -9.44441 -9.17505 -9.11382 -8.92910 -8.25995 -5.90822 -3.93096 2.42227 2.63394 2.94010 3.22193 3.37387 3.43077 3.46482 4.02956 4.17045 4.28302 4.44757 4.52843 4.60481 4.81692 4.88765 4.94656 5.04389 5.17564 5.36699 5.40945 5.42649 5.44228 5.46633 5.47889 5.57294 5.73067 5.94311 6.18438 6.22072 6.38120 6.52968 6.62258 6.91656 6.93442 7.09290 7.26419 7.43677 7.79373 7.96112 8.00122 8.11192 8.29058 8.53060 9.14726 9.70264 11.20609 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043716 B = 0.002485 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.351189 B =11265.880405 C =11383.698364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.137 4.137 13 C 0.519 3.481 14 O -0.536 6.536 15 N -0.718 5.718 16 C 0.129 3.871 17 H 0.112 0.888 18 C -0.121 4.121 19 C -0.121 4.121 20 C -0.143 4.143 21 C 0.103 3.897 22 N -0.725 5.725 23 C 0.506 3.494 24 O -0.536 6.536 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.404 0.596 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.151 -31.024 2.751 31.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.177 4.177 13 C 0.307 3.693 14 O -0.411 6.411 15 N -0.371 5.371 16 C 0.020 3.980 17 H 0.130 0.870 18 C -0.160 4.160 19 C -0.159 4.159 20 C -0.182 4.182 21 C -0.021 4.021 22 N -0.378 5.378 23 C 0.291 3.709 24 O -0.412 6.412 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.239 0.761 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 3.429 -30.495 2.481 30.787 hybrid contribution 0.738 0.696 -0.432 1.103 sum 4.167 -29.798 2.049 30.158 Atomic orbital electron populations 1.69975 1.06049 1.26461 1.51065 1.25044 0.94840 0.99221 0.95521 0.86609 0.79809 0.83609 0.78038 1.20721 1.21285 1.19929 1.21294 0.92991 0.91214 1.50226 0.92750 1.19099 0.94080 0.91275 0.97301 1.21649 0.99071 0.93973 1.00086 1.21449 0.97030 0.92706 1.02913 1.21779 1.00117 0.91650 1.04118 1.21147 0.88446 0.85550 0.74123 1.90688 1.14294 1.87596 1.48547 1.45783 1.10185 1.04313 1.76780 1.20994 0.98259 0.85327 0.93445 0.86999 1.21557 0.98219 0.94819 1.01365 1.21122 0.99281 0.97096 0.98372 1.21866 0.98532 0.98729 0.99033 1.21849 0.95402 0.95355 0.89532 1.45907 1.46395 1.35308 1.10227 1.21031 0.78374 0.79146 0.92372 1.90756 1.52452 1.52351 1.45631 0.93078 0.96590 0.96596 0.93451 0.93463 0.91826 0.91833 0.88896 0.89049 0.76093 0.90935 0.89526 0.90867 0.91220 0.91012 0.90203 0.89249 0.90269 0.76342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.29 55.43 0.74 -27.32 16 2 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.31 9.11 -34.44 -0.31 -15.62 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.37 5.15 -26.73 -0.14 -2.51 16 11 C -0.10 -1.96 4.50 -26.73 -0.12 -2.08 16 12 C -0.14 -1.98 5.70 -27.89 -0.16 -2.14 16 13 C 0.52 7.90 7.80 -10.99 -0.09 7.81 16 14 O -0.54 -10.26 15.64 5.56 0.09 -10.17 16 15 N -0.72 -8.13 4.58 -54.55 -0.25 -8.38 16 16 C 0.13 1.28 2.15 -68.70 -0.15 1.13 16 17 H 0.11 1.18 6.22 -51.93 -0.32 0.85 16 18 C -0.12 -0.72 5.19 -27.31 -0.14 -0.86 16 19 C -0.12 -0.50 5.28 -27.96 -0.15 -0.64 16 20 C -0.14 -0.52 5.74 -27.36 -0.16 -0.68 16 21 C 0.10 0.50 6.46 -3.67 -0.02 0.48 16 22 N -0.72 -6.01 5.27 -59.90 -0.32 -6.33 16 23 C 0.51 6.09 6.98 -11.25 -0.08 6.01 16 24 O -0.54 -8.88 17.31 5.56 0.10 -8.78 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 31 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.40 3.44 8.61 -40.82 -0.35 3.09 16 35 H 0.07 0.45 7.86 -51.93 -0.41 0.04 16 36 H 0.09 0.43 8.08 -51.93 -0.42 0.01 16 37 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.07 0.28 7.87 -51.93 -0.41 -0.13 16 39 H 0.07 0.31 8.05 -51.93 -0.42 -0.11 16 40 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 41 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.08 0.43 6.71 -51.93 -0.35 0.08 16 43 H 0.40 2.99 8.91 -40.82 -0.36 2.63 16 LS Contribution 349.28 15.07 5.26 5.26 Total: -1.00 -38.06 349.28 -8.38 -46.44 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -7.23 Total: -0.83 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -1.75 Total: -7.17 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.17 Total: -42.03 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.18 Total: -18.96 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -38.06 -8.38 -46.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588282552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.507 kcal (2) G-P(sol) polarization free energy of solvation -38.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds