Wall clock time and date at job start Tue Mar 31 2020 06:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47188 * 179.97438 * 12 11 10 14 14 O 1.21282 * 120.00025 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00035 * 179.97438 * 13 12 11 16 16 C 1.46499 * 120.00217 * 180.02562 * 15 13 12 17 17 H 1.09005 * 109.62951 * 325.40263 * 16 15 13 18 18 C 1.53063 * 109.63448 * 205.00343 * 16 15 13 19 19 C 1.51797 * 110.74339 * 155.38219 * 18 16 15 20 20 C 1.51783 * 113.81015 * 66.80536 * 19 18 16 21 21 C 1.52987 * 110.88316 * 292.99944 * 20 19 18 22 22 N 1.47190 * 108.66488 * 86.46850 * 21 20 19 23 23 C 1.33379 * 120.42531 * 288.03724 * 22 21 20 24 24 O 1.21274 * 119.88721 * 180.29035 * 23 22 21 25 25 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 27 27 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 28 28 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 29 29 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 30 30 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 31 31 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 32 32 H 1.09000 * 109.47380 * 300.00763 * 12 11 10 33 33 H 1.09001 * 109.46997 * 60.00426 * 12 11 10 34 34 H 0.97002 * 119.99767 * 0.02562 * 15 13 12 35 35 H 1.08996 * 109.22345 * 275.70572 * 18 16 15 36 36 H 1.08998 * 109.22302 * 35.10043 * 18 16 15 37 37 H 1.08997 * 108.61202 * 187.92827 * 19 18 16 38 38 H 1.08997 * 108.61202 * 305.83194 * 19 18 16 39 39 H 1.09004 * 109.19298 * 53.35711 * 20 19 18 40 40 H 1.08999 * 109.19093 * 172.68152 * 20 19 18 41 41 H 1.08998 * 109.60333 * 206.22497 * 21 20 19 42 42 H 1.09004 * 109.60486 * 326.70979 * 21 20 19 43 43 H 0.96996 * 119.79057 * 108.04376 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 6 1.7213 -7.4551 -0.0018 14 8 0.5085 -7.4551 -0.0018 15 7 2.3952 -8.6222 -0.0029 16 6 1.6628 -9.8910 -0.0034 17 1 0.7480 -9.7860 0.5800 18 6 2.5374 -10.9900 0.6048 19 6 1.6803 -12.1076 1.1711 20 6 0.9169 -12.8885 0.1169 21 6 -0.1480 -12.0126 -0.5459 22 7 0.4720 -11.2814 -1.6628 23 6 1.3217 -10.2809 -1.4263 24 8 1.8229 -9.6816 -2.3539 25 1 -0.4851 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 2.8721 -3.6042 -0.8905 29 1 2.8721 -3.6043 0.8895 30 1 0.8535 -5.0450 0.8885 31 1 0.8542 -5.0446 -0.8914 32 1 3.1014 -6.0917 -0.8917 33 1 3.1014 -6.0927 0.8882 34 1 3.3652 -8.6222 -0.0032 35 1 3.1922 -11.3956 -0.1664 36 1 3.1447 -10.5644 1.4037 37 1 2.3240 -12.7973 1.7169 38 1 0.9629 -11.6762 1.8691 39 1 1.6144 -13.2414 -0.6428 40 1 0.4339 -13.7457 0.5859 41 1 -0.9552 -12.6406 -0.9230 42 1 -0.5428 -11.3032 0.1815 43 1 0.2611 -11.5285 -2.5768 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588282552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:20 Heat of formation + Delta-G solvation = -134.514276 kcal Electronic energy + Delta-G solvation = -21941.993413 eV Core-core repulsion = 18598.493227 eV Total energy + Delta-G solvation = -3343.500186 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.76422 -40.25809 -37.78254 -36.72775 -36.08782 -34.62189 -34.00255 -31.88510 -30.79537 -27.89241 -26.71191 -25.09066 -24.17335 -22.11666 -21.73680 -21.07659 -20.70703 -18.49674 -18.40869 -18.19646 -17.88050 -16.84338 -16.78078 -16.48489 -16.01059 -15.51262 -15.12627 -15.05911 -14.79035 -14.55325 -14.40897 -14.07535 -13.69783 -13.59462 -13.33247 -13.22990 -12.82378 -12.64309 -12.34570 -12.17591 -12.14276 -12.11168 -11.73050 -11.60377 -11.40049 -11.37005 -11.30617 -11.18056 -10.81864 -10.55339 -10.20654 -10.06108 -8.18807 -6.31141 1.40016 1.42733 1.48264 1.53804 1.59624 2.01948 2.41486 2.44428 3.13721 3.41727 3.65621 3.78167 3.85277 4.01090 4.04760 4.13523 4.17091 4.33488 4.44962 4.60358 4.65963 4.68076 4.76688 4.82537 4.87334 4.97664 5.05028 5.15378 5.18086 5.20252 5.28651 5.32421 5.38207 5.42041 5.56350 5.77507 5.84008 5.87563 6.17744 6.25123 6.46702 6.87130 7.14666 7.21762 7.38382 8.93669 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043716 B = 0.002485 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.351189 B =11265.880405 C =11383.698364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.019 3.981 10 C -0.095 4.095 11 C -0.095 4.095 12 C -0.128 4.128 13 C 0.515 3.485 14 O -0.586 6.586 15 N -0.702 5.702 16 C 0.126 3.874 17 H 0.106 0.894 18 C -0.113 4.113 19 C -0.122 4.122 20 C -0.138 4.138 21 C 0.095 3.905 22 N -0.716 5.716 23 C 0.496 3.504 24 O -0.593 6.593 25 H 0.263 0.737 26 H -0.018 1.018 27 H -0.013 1.013 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.036 0.964 32 H 0.110 0.890 33 H 0.127 0.873 34 H 0.420 0.580 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.073 0.927 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.309 -32.454 3.850 33.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.182 1.182 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.018 4.018 10 C -0.133 4.133 11 C -0.133 4.133 12 C -0.167 4.167 13 C 0.304 3.696 14 O -0.465 6.465 15 N -0.355 5.355 16 C 0.017 3.983 17 H 0.124 0.876 18 C -0.151 4.151 19 C -0.159 4.159 20 C -0.176 4.176 21 C -0.028 4.028 22 N -0.367 5.367 23 C 0.282 3.718 24 O -0.474 6.474 25 H 0.072 0.928 26 H 0.000 1.000 27 H 0.006 0.994 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.128 0.872 33 H 0.145 0.855 34 H 0.257 0.743 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.122 0.878 41 H 0.133 0.867 42 H 0.092 0.908 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 5.612 -32.007 3.603 32.695 hybrid contribution -0.023 1.052 -0.779 1.309 sum 5.590 -30.955 2.824 31.582 Atomic orbital electron populations 1.70133 1.08100 1.27782 1.51902 1.26113 0.95809 1.03807 0.94762 0.85360 0.78696 0.77952 0.78495 1.19813 1.20800 1.18220 1.21754 0.93754 0.92200 1.50246 0.91563 1.19056 0.94678 0.93801 0.94299 1.21450 0.97839 0.92665 1.01342 1.21239 0.97463 0.93673 1.00946 1.21668 0.99023 0.89370 1.06664 1.21248 0.87859 0.86796 0.73691 1.90669 1.16327 1.88330 1.51198 1.45644 1.11035 1.03945 1.74842 1.21225 0.98895 0.85712 0.92443 0.87636 1.21579 0.97897 0.94037 1.01560 1.21169 0.99481 0.96768 0.98520 1.21842 0.98003 0.98979 0.98807 1.22177 0.96545 0.95468 0.88590 1.45999 1.44891 1.34259 1.11555 1.21464 0.78405 0.79339 0.92623 1.90720 1.54958 1.54584 1.47164 0.92825 0.99995 0.99444 0.92451 0.91631 0.93268 0.94557 0.87182 0.85494 0.74278 0.90977 0.87935 0.88932 0.90946 0.91436 0.87792 0.86698 0.90816 0.76029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.23 13.29 21.45 0.28 -59.94 16 2 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 3 Si 0.97 45.69 29.54 68.60 2.03 47.72 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 7 C -0.54 -32.21 9.11 25.60 0.23 -31.98 16 8 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 9 C 0.02 1.07 4.97 29.85 0.15 1.21 16 10 C -0.10 -4.10 5.15 30.60 0.16 -3.94 16 11 C -0.09 -3.68 4.50 30.59 0.14 -3.54 16 12 C -0.13 -3.54 5.70 29.85 0.17 -3.37 16 13 C 0.52 15.59 7.80 87.66 0.68 16.28 16 14 O -0.59 -23.19 15.64 -3.04 -0.05 -23.24 16 15 N -0.70 -15.23 4.58 -444.90 -2.04 -17.27 16 16 C 0.13 2.41 2.15 44.50 0.10 2.51 16 17 H 0.11 2.19 6.22 -2.38 -0.01 2.18 16 18 C -0.11 -1.10 5.19 30.22 0.16 -0.94 16 19 C -0.12 -0.66 5.28 29.80 0.16 -0.50 16 20 C -0.14 -0.64 5.74 30.19 0.17 -0.47 16 21 C 0.10 0.77 6.46 86.24 0.56 1.33 16 22 N -0.72 -11.57 5.27 -462.61 -2.44 -14.01 16 23 C 0.50 11.99 6.98 88.10 0.61 12.61 16 24 O -0.59 -20.24 17.31 -3.01 -0.05 -20.29 16 25 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 26 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 27 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.05 2.02 8.10 -2.39 -0.02 2.00 16 31 H 0.04 1.57 8.10 -2.39 -0.02 1.55 16 32 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.42 6.34 8.61 -92.71 -0.80 5.54 16 35 H 0.07 0.75 7.86 -2.39 -0.02 0.73 16 36 H 0.10 0.70 8.08 -2.39 -0.02 0.68 16 37 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.07 0.39 7.87 -2.39 -0.02 0.37 16 39 H 0.07 0.42 8.05 -2.38 -0.02 0.40 16 40 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.07 0.73 6.71 -2.38 -0.02 0.71 16 43 H 0.40 5.98 8.91 -92.71 -0.83 5.16 16 Total: -1.00 -86.61 349.28 0.87 -85.75 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -0.62 Total: 12.10 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 3.75 Total: -10.81 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -4.19 Total: -91.22 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -0.10 Total: -43.53 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -86.61 0.87 -85.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588282552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.768 kcal (2) G-P(sol) polarization free energy of solvation -86.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds