Wall clock time and date at job start Tue Mar 31 2020 06:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99949 * 2 1 4 4 H 1.48504 * 109.47033 * 270.00235 * 3 2 1 5 5 H 1.48499 * 109.47159 * 30.00006 * 3 2 1 6 6 H 1.48496 * 109.47125 * 150.00337 * 3 2 1 7 7 C 1.37871 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99900 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00219 * 179.72114 * 7 2 1 10 10 C 1.53006 * 109.47110 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47189 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47490 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47411 * 179.97438 * 12 11 10 14 14 O 1.21273 * 119.99885 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99961 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00135 * 180.02562 * 15 13 12 17 17 H 1.08999 * 109.63297 * 42.95196 * 16 15 13 18 18 C 1.53058 * 109.63546 * 163.35301 * 16 15 13 19 19 C 1.51799 * 110.74280 * 34.78561 * 18 16 15 20 20 C 1.51779 * 113.80942 * 66.80945 * 19 18 16 21 21 C 1.52985 * 110.88252 * 292.99217 * 20 19 18 22 22 N 1.47203 * 108.66106 * 86.47041 * 21 20 19 23 23 C 1.33372 * 120.42751 * 288.04034 * 22 21 20 24 24 O 1.21273 * 119.89332 * 180.29212 * 23 22 21 25 25 H 0.96998 * 119.99982 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47356 * 299.99920 * 9 7 2 27 27 H 1.08998 * 109.46700 * 60.00002 * 9 7 2 28 28 H 1.09000 * 109.47019 * 300.00217 * 10 9 7 29 29 H 1.09000 * 109.46778 * 59.99850 * 10 9 7 30 30 H 1.09000 * 109.46899 * 300.00419 * 11 10 9 31 31 H 1.09004 * 109.47168 * 59.99787 * 11 10 9 32 32 H 1.09000 * 109.46970 * 300.00208 * 12 11 10 33 33 H 1.09004 * 109.46986 * 59.99801 * 12 11 10 34 34 H 0.97008 * 119.99823 * 0.02562 * 15 13 12 35 35 H 1.09001 * 109.22194 * 155.11086 * 18 16 15 36 36 H 1.08993 * 109.22493 * 274.50133 * 18 16 15 37 37 H 1.09001 * 108.61147 * 187.92524 * 19 18 16 38 38 H 1.08998 * 108.61705 * 305.68839 * 19 18 16 39 39 H 1.08991 * 109.19646 * 53.35630 * 20 19 18 40 40 H 1.09000 * 109.19258 * 172.68302 * 20 19 18 41 41 H 1.09001 * 109.60982 * 206.22363 * 21 20 19 42 42 H 1.08998 * 109.60511 * 326.55720 * 21 20 19 43 43 H 0.96990 * 119.78380 * 108.04321 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0069 10 6 4.0216 -2.6365 -0.0055 11 6 5.5515 -2.6365 -0.0113 12 6 6.0616 -4.0789 -0.0093 13 6 7.5687 -4.0788 -0.0157 14 8 8.1750 -3.0286 -0.0208 15 7 8.2426 -5.2460 -0.0146 16 6 9.7075 -5.2460 -0.0202 17 1 10.0764 -4.4924 0.6755 18 6 10.2234 -6.6259 0.3950 19 6 9.3040 -7.7200 -0.1167 20 6 9.2921 -7.8530 -1.6286 21 6 8.6654 -6.6185 -2.2797 22 7 9.7128 -5.6010 -2.4654 23 6 10.2110 -4.9451 -1.4164 24 8 11.0699 -4.1050 -1.5811 25 1 -0.4850 0.8400 -0.0004 26 1 3.8712 -0.6819 -0.8994 27 1 3.8785 -0.6783 0.8805 28 1 3.6620 -3.1481 0.8872 29 1 3.6545 -3.1524 -0.8927 30 1 5.9115 -2.1246 -0.9038 31 1 5.9183 -2.1205 0.8761 32 1 5.7017 -4.5903 0.8834 33 1 5.6949 -4.5952 -0.8965 34 1 7.7575 -6.0861 -0.0102 35 1 11.2218 -6.7745 -0.0164 36 1 10.2721 -6.6784 1.4826 37 1 9.6207 -8.6701 0.3137 38 1 8.2898 -7.5089 0.2221 39 1 10.3154 -7.9664 -1.9864 40 1 8.7156 -8.7353 -1.9062 41 1 8.2434 -6.8898 -3.2473 42 1 7.8795 -6.2245 -1.6354 43 1 10.0427 -5.4063 -3.3564 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588282553.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:23 Heat of formation + Delta-G solvation = -83.516844 kcal Electronic energy + Delta-G solvation = -22471.981366 eV Core-core repulsion = 19130.692594 eV Total energy + Delta-G solvation = -3341.288772 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.34121 -39.17311 -37.39567 -35.18601 -34.81252 -33.37705 -32.59526 -31.08310 -29.88551 -26.91387 -25.66050 -24.50026 -22.49571 -21.36592 -20.35578 -20.11477 -20.01878 -17.67882 -17.29811 -17.06469 -16.59800 -15.95639 -15.61319 -15.26138 -14.85273 -14.36969 -14.30107 -14.12655 -14.01991 -13.74034 -13.15581 -12.91819 -12.65596 -12.53488 -12.34564 -12.08794 -11.77032 -11.44597 -11.36208 -11.30737 -11.12818 -10.75209 -10.55127 -10.46908 -10.02734 -9.83272 -9.65107 -9.49431 -9.44752 -9.12351 -9.10778 -8.49285 -6.00650 -3.98202 2.24324 2.53267 2.98384 3.03227 3.36128 3.43219 3.49559 4.01114 4.11833 4.25418 4.29620 4.50522 4.52860 4.69756 4.80504 4.95683 4.98747 5.15567 5.22479 5.23813 5.25980 5.34397 5.36842 5.45250 5.51073 5.68178 5.71262 5.99995 6.02681 6.12251 6.38828 6.49980 6.66514 6.80903 6.93335 6.98142 7.18309 7.37907 7.50636 7.84724 7.97385 8.08543 8.57927 9.04058 9.62920 11.12823 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030310 B = 0.003024 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.566570 B = 9256.911488 C = 9601.801494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.107 4.107 12 C -0.137 4.137 13 C 0.505 3.495 14 O -0.520 6.520 15 N -0.732 5.732 16 C 0.133 3.867 17 H 0.118 0.882 18 C -0.123 4.123 19 C -0.127 4.127 20 C -0.143 4.143 21 C 0.090 3.910 22 N -0.720 5.720 23 C 0.514 3.486 24 O -0.539 6.539 25 H 0.262 0.738 26 H 0.011 0.989 27 H 0.016 0.984 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.404 0.596 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.125 -21.817 -1.811 29.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.139 4.139 11 C -0.145 4.145 12 C -0.177 4.177 13 C 0.293 3.707 14 O -0.393 6.393 15 N -0.395 5.395 16 C 0.024 3.976 17 H 0.135 0.865 18 C -0.161 4.161 19 C -0.165 4.165 20 C -0.182 4.182 21 C -0.035 4.035 22 N -0.372 5.372 23 C 0.298 3.702 24 O -0.415 6.415 25 H 0.072 0.928 26 H 0.029 0.971 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.246 0.754 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 20.781 -20.513 -1.680 29.248 hybrid contribution 0.176 0.452 -0.429 0.648 sum 20.958 -20.061 -2.109 29.088 Atomic orbital electron populations 1.69918 1.06309 1.26841 1.51487 1.25036 0.94730 0.99227 0.94586 0.86780 0.80449 0.83546 0.78569 1.20313 1.21442 1.18881 1.21179 0.89653 0.94370 1.50543 0.91110 1.19580 0.96909 0.92486 0.96358 1.21471 0.91579 0.99975 1.00914 1.21496 0.97284 0.92707 1.03041 1.21793 0.89661 1.02018 1.04262 1.21296 0.91129 0.83231 0.75047 1.90770 1.70388 1.31165 1.47012 1.46754 1.05693 1.09692 1.77316 1.21345 0.81657 1.00214 0.94357 0.86455 1.21576 1.00313 0.91664 1.02568 1.21172 1.00120 0.99262 0.95945 1.21863 1.02629 0.98348 0.95331 1.22176 0.90759 0.87866 1.02707 1.45842 1.40908 1.40715 1.09763 1.20849 0.81574 0.80101 0.87722 1.90769 1.32358 1.32444 1.85891 0.92809 0.97062 0.96584 0.92796 0.92876 0.91781 0.91678 0.88728 0.88973 0.75383 0.90067 0.89601 0.90601 0.91571 0.90921 0.90080 0.89458 0.89295 0.76475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.39 13.96 55.43 0.77 -27.61 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.47 27.47 -169.99 -4.67 17.80 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 7 C -0.52 -15.06 9.66 -34.44 -0.33 -15.40 16 8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 9 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 10 C -0.10 -1.96 5.15 -26.73 -0.14 -2.10 16 11 C -0.11 -1.77 4.50 -26.74 -0.12 -1.89 16 12 C -0.14 -1.61 5.70 -27.88 -0.16 -1.76 16 13 C 0.51 6.44 7.69 -10.99 -0.08 6.35 16 14 O -0.52 -9.30 15.68 5.56 0.09 -9.21 16 15 N -0.73 -6.25 3.10 -54.55 -0.17 -6.42 16 16 C 0.13 1.26 2.69 -68.69 -0.18 1.07 16 17 H 0.12 1.37 7.83 -51.93 -0.41 0.97 16 18 C -0.12 -0.67 5.57 -27.31 -0.15 -0.83 16 19 C -0.13 -0.43 5.19 -27.96 -0.15 -0.57 16 20 C -0.14 -0.49 5.73 -27.36 -0.16 -0.64 16 21 C 0.09 0.45 6.42 -3.67 -0.02 0.42 16 22 N -0.72 -6.04 5.27 -59.90 -0.32 -6.36 16 23 C 0.51 6.15 6.52 -11.25 -0.07 6.07 16 24 O -0.54 -9.10 17.92 5.56 0.10 -9.00 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.01 0.27 7.58 -51.93 -0.39 -0.12 16 27 H 0.02 0.40 7.19 -51.93 -0.37 0.02 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 31 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.40 2.11 4.35 -40.82 -0.18 1.93 16 35 H 0.08 0.47 7.86 -51.93 -0.41 0.06 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.07 0.17 5.72 -51.93 -0.30 -0.13 16 39 H 0.07 0.31 8.05 -51.93 -0.42 -0.11 16 40 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 41 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.09 0.47 4.51 -51.93 -0.23 0.23 16 43 H 0.40 3.12 8.91 -40.82 -0.36 2.75 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -37.95 338.14 -7.76 -45.71 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -6.88 Total: -2.06 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -1.78 Total: -7.94 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.29 Total: -40.39 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.19 Total: -18.21 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.67 Total: 17.80 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -37.95 -7.76 -45.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588282553.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.810 kcal (2) G-P(sol) polarization free energy of solvation -37.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds