Wall clock time and date at job start Tue Mar 31 2020 06:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99949 * 2 1 4 4 H 1.48504 * 109.47033 * 270.00235 * 3 2 1 5 5 H 1.48499 * 109.47159 * 30.00006 * 3 2 1 6 6 H 1.48496 * 109.47125 * 150.00337 * 3 2 1 7 7 C 1.37871 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99900 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00219 * 179.72114 * 7 2 1 10 10 C 1.53006 * 109.47110 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47189 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47490 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47411 * 179.97438 * 12 11 10 14 14 O 1.21273 * 119.99885 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99961 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00135 * 180.02562 * 15 13 12 17 17 H 1.08999 * 109.63297 * 42.95196 * 16 15 13 18 18 C 1.53058 * 109.63546 * 163.35301 * 16 15 13 19 19 C 1.51799 * 110.74280 * 34.78561 * 18 16 15 20 20 C 1.51779 * 113.80942 * 66.80945 * 19 18 16 21 21 C 1.52985 * 110.88252 * 292.99217 * 20 19 18 22 22 N 1.47203 * 108.66106 * 86.47041 * 21 20 19 23 23 C 1.33372 * 120.42751 * 288.04034 * 22 21 20 24 24 O 1.21273 * 119.89332 * 180.29212 * 23 22 21 25 25 H 0.96998 * 119.99982 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47356 * 299.99920 * 9 7 2 27 27 H 1.08998 * 109.46700 * 60.00002 * 9 7 2 28 28 H 1.09000 * 109.47019 * 300.00217 * 10 9 7 29 29 H 1.09000 * 109.46778 * 59.99850 * 10 9 7 30 30 H 1.09000 * 109.46899 * 300.00419 * 11 10 9 31 31 H 1.09004 * 109.47168 * 59.99787 * 11 10 9 32 32 H 1.09000 * 109.46970 * 300.00208 * 12 11 10 33 33 H 1.09004 * 109.46986 * 59.99801 * 12 11 10 34 34 H 0.97008 * 119.99823 * 0.02562 * 15 13 12 35 35 H 1.09001 * 109.22194 * 155.11086 * 18 16 15 36 36 H 1.08993 * 109.22493 * 274.50133 * 18 16 15 37 37 H 1.09001 * 108.61147 * 187.92524 * 19 18 16 38 38 H 1.08998 * 108.61705 * 305.68839 * 19 18 16 39 39 H 1.08991 * 109.19646 * 53.35630 * 20 19 18 40 40 H 1.09000 * 109.19258 * 172.68302 * 20 19 18 41 41 H 1.09001 * 109.60982 * 206.22363 * 21 20 19 42 42 H 1.08998 * 109.60511 * 326.55720 * 21 20 19 43 43 H 0.96990 * 119.78380 * 108.04321 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0069 10 6 4.0216 -2.6365 -0.0055 11 6 5.5515 -2.6365 -0.0113 12 6 6.0616 -4.0789 -0.0093 13 6 7.5687 -4.0788 -0.0157 14 8 8.1750 -3.0286 -0.0208 15 7 8.2426 -5.2460 -0.0146 16 6 9.7075 -5.2460 -0.0202 17 1 10.0764 -4.4924 0.6755 18 6 10.2234 -6.6259 0.3950 19 6 9.3040 -7.7200 -0.1167 20 6 9.2921 -7.8530 -1.6286 21 6 8.6654 -6.6185 -2.2797 22 7 9.7128 -5.6010 -2.4654 23 6 10.2110 -4.9451 -1.4164 24 8 11.0699 -4.1050 -1.5811 25 1 -0.4850 0.8400 -0.0004 26 1 3.8712 -0.6819 -0.8994 27 1 3.8785 -0.6783 0.8805 28 1 3.6620 -3.1481 0.8872 29 1 3.6545 -3.1524 -0.8927 30 1 5.9115 -2.1246 -0.9038 31 1 5.9183 -2.1205 0.8761 32 1 5.7017 -4.5903 0.8834 33 1 5.6949 -4.5952 -0.8965 34 1 7.7575 -6.0861 -0.0102 35 1 11.2218 -6.7745 -0.0164 36 1 10.2721 -6.6784 1.4826 37 1 9.6207 -8.6701 0.3137 38 1 8.2898 -7.5089 0.2221 39 1 10.3154 -7.9664 -1.9864 40 1 8.7156 -8.7353 -1.9062 41 1 8.2434 -6.8898 -3.2473 42 1 7.8795 -6.2245 -1.6354 43 1 10.0427 -5.4063 -3.3564 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588282553.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:22 Heat of formation + Delta-G solvation = -111.984103 kcal Electronic energy + Delta-G solvation = -22473.215799 eV Core-core repulsion = 19130.692594 eV Total energy + Delta-G solvation = -3342.523205 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.13037 -40.19114 -38.19254 -36.68767 -35.64776 -34.61426 -34.00770 -32.20815 -31.13470 -27.96777 -26.84486 -25.08098 -23.99063 -22.17127 -21.72128 -21.19614 -20.71991 -18.85815 -18.45534 -18.15838 -17.84495 -16.97303 -16.47959 -16.28786 -15.98533 -15.75587 -15.18055 -15.07025 -14.95277 -14.70268 -14.48319 -13.93694 -13.79422 -13.60633 -13.54186 -13.40772 -12.93242 -12.86274 -12.34960 -12.07893 -12.00106 -11.76704 -11.74504 -11.66468 -11.51186 -11.34225 -11.27012 -11.25806 -10.86808 -10.76098 -10.26637 -9.92877 -8.29926 -6.32391 1.33909 1.35559 1.35816 1.48150 1.56682 2.15214 2.32340 2.35305 3.05749 3.41830 3.64680 3.75376 3.85248 3.92914 4.01493 4.14144 4.16056 4.31789 4.55112 4.61580 4.65066 4.66199 4.69579 4.78036 4.85307 4.92132 5.04141 5.14245 5.16099 5.19328 5.21390 5.25234 5.31859 5.42150 5.61547 5.66585 5.69138 5.81630 6.18058 6.29688 6.41864 6.75710 7.13404 7.18704 7.32626 8.86564 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030310 B = 0.003024 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.566570 B = 9256.911488 C = 9601.801494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.528 4.528 8 H 0.041 0.959 9 C -0.019 4.019 10 C -0.092 4.092 11 C -0.100 4.100 12 C -0.128 4.128 13 C 0.505 3.495 14 O -0.580 6.580 15 N -0.705 5.705 16 C 0.134 3.866 17 H 0.088 0.912 18 C -0.116 4.116 19 C -0.127 4.127 20 C -0.139 4.139 21 C 0.081 3.919 22 N -0.710 5.710 23 C 0.504 3.496 24 O -0.603 6.603 25 H 0.266 0.734 26 H 0.009 0.991 27 H 0.012 0.988 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.424 0.576 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.089 0.911 43 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.519 -24.297 -1.791 31.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.178 1.178 7 C -0.566 4.566 8 H 0.059 0.941 9 C -0.056 4.056 10 C -0.129 4.129 11 C -0.138 4.138 12 C -0.168 4.168 13 C 0.294 3.706 14 O -0.458 6.458 15 N -0.368 5.368 16 C 0.025 3.975 17 H 0.106 0.894 18 C -0.154 4.154 19 C -0.165 4.165 20 C -0.177 4.177 21 C -0.042 4.042 22 N -0.361 5.361 23 C 0.289 3.711 24 O -0.484 6.484 25 H 0.075 0.925 26 H 0.028 0.972 27 H 0.030 0.970 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.270 0.730 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.107 0.893 43 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 21.139 -23.106 -1.674 31.362 hybrid contribution -0.007 1.121 -0.475 1.218 sum 21.133 -21.985 -2.149 30.570 Atomic orbital electron populations 1.70048 1.08023 1.28038 1.52968 1.25943 0.95569 1.03207 0.94394 0.85749 0.79382 0.78977 0.79101 1.19375 1.20685 1.17849 1.21546 0.92030 0.93272 1.49760 0.94103 1.19593 0.93980 0.96146 0.95908 1.21326 0.93399 0.96554 1.01662 1.21296 0.95063 0.95982 1.01508 1.21718 0.88655 0.99104 1.07293 1.21509 0.91627 0.83284 0.74158 1.90765 1.71490 1.33497 1.50050 1.46488 1.05386 1.09493 1.75428 1.21269 0.81781 1.02000 0.92443 0.89366 1.21602 1.00468 0.89750 1.03556 1.21221 1.00191 0.99087 0.95978 1.21848 1.02470 0.98223 0.95141 1.22519 0.89799 0.87515 1.04395 1.45962 1.40666 1.40366 1.09070 1.21330 0.81005 0.79508 0.89263 1.90728 1.35382 1.35390 1.86885 0.92517 0.97225 0.96990 0.92031 0.92102 0.93522 0.93251 0.85638 0.85844 0.72952 0.90572 0.88124 0.88583 0.90142 0.91722 0.87442 0.87177 0.89287 0.76321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.27 13.96 21.44 0.30 -59.97 16 2 C 0.01 0.34 5.47 84.65 0.46 0.80 16 3 Si 0.94 46.28 27.47 68.60 1.88 48.17 16 4 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.25 -11.98 6.54 99.48 0.65 -11.33 16 7 C -0.53 -30.86 9.66 25.60 0.25 -30.61 16 8 H 0.04 2.56 7.99 -2.91 -0.02 2.53 16 9 C -0.02 -0.91 4.04 29.85 0.12 -0.79 16 10 C -0.09 -3.40 5.15 30.59 0.16 -3.25 16 11 C -0.10 -3.18 4.50 30.59 0.14 -3.04 16 12 C -0.13 -2.60 5.70 29.85 0.17 -2.43 16 13 C 0.51 12.12 7.69 87.66 0.67 12.80 16 14 O -0.58 -21.08 15.68 -3.01 -0.05 -21.13 16 15 N -0.71 -10.46 3.10 -444.90 -1.38 -11.84 16 16 C 0.13 2.46 2.69 44.50 0.12 2.58 16 17 H 0.09 2.18 7.83 -2.39 -0.02 2.16 16 18 C -0.12 -1.02 5.57 30.22 0.17 -0.86 16 19 C -0.13 -0.34 5.19 29.80 0.15 -0.18 16 20 C -0.14 -0.40 5.73 30.19 0.17 -0.23 16 21 C 0.08 0.54 6.42 86.24 0.55 1.10 16 22 N -0.71 -11.21 5.27 -462.59 -2.44 -13.65 16 23 C 0.50 12.24 6.52 88.11 0.57 12.82 16 24 O -0.60 -21.63 17.92 -3.01 -0.05 -21.68 16 25 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 26 H 0.01 0.46 7.58 -2.39 -0.02 0.44 16 27 H 0.01 0.58 7.19 -2.39 -0.02 0.56 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 31 H 0.05 1.71 8.10 -2.38 -0.02 1.69 16 32 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.42 2.71 4.35 -92.70 -0.40 2.30 16 35 H 0.08 0.79 7.86 -2.39 -0.02 0.77 16 36 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.08 0.00 5.72 -2.39 -0.01 -0.01 16 39 H 0.06 0.35 8.05 -2.39 -0.02 0.33 16 40 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.09 0.59 4.51 -2.39 -0.01 0.58 16 43 H 0.40 6.07 8.91 -92.72 -0.83 5.24 16 Total: -1.00 -87.35 338.14 1.71 -85.64 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -0.27 Total: 5.75 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 3.72 Total: -11.30 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -3.52 Total: -85.46 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -0.10 Total: -42.81 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.88 Total: 48.17 kcal Total: -87.35 1.71 -85.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588282553.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.341 kcal (2) G-P(sol) polarization free energy of solvation -87.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds