Wall clock time and date at job start Tue Mar 31 2020 05:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00131 * 2 1 4 4 H 1.48495 * 109.47177 * 239.99930 * 3 2 1 5 5 H 1.48506 * 109.46953 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47102 * 119.99906 * 3 2 1 7 7 C 1.37876 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99216 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00383 * 359.97438 * 7 2 1 10 10 O 1.42902 * 110.88565 * 62.42844 * 9 7 2 11 11 C 1.55154 * 111.03939 * 186.33190 * 9 7 2 12 12 C 1.54325 * 102.94303 * 153.59058 * 11 9 7 13 13 N 1.47290 * 107.30599 * 337.81911 * 12 11 9 14 14 C 1.34774 * 125.79121 * 178.92556 * 13 12 11 15 15 O 1.21584 * 119.99758 * 180.02562 * 14 13 12 16 16 N 1.34780 * 120.00256 * 359.97438 * 14 13 12 17 17 C 1.46503 * 119.99878 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46534 * 275.00009 * 17 16 14 19 19 C 1.53006 * 109.46721 * 180.02562 * 18 17 16 20 20 C 1.52992 * 109.47157 * 59.99744 * 19 18 17 21 21 C 1.53002 * 109.47514 * 299.99770 * 20 19 18 22 22 C 1.52992 * 109.46825 * 155.00070 * 17 16 14 23 23 C 1.47425 * 108.55742 * 358.92448 * 13 12 11 24 24 H 0.97010 * 119.99834 * 0.02562 * 1 2 3 25 25 H 0.96703 * 114.00194 * 297.57527 * 10 9 7 26 26 H 1.09002 * 110.72290 * 271.95744 * 11 9 7 27 27 H 1.08994 * 110.71922 * 35.05213 * 11 9 7 28 28 H 1.09004 * 109.88239 * 97.22707 * 12 11 9 29 29 H 1.08995 * 109.88239 * 218.23629 * 12 11 9 30 30 H 0.96999 * 119.99504 * 359.97438 * 16 14 13 31 31 H 1.08994 * 109.47108 * 35.00038 * 17 16 14 32 32 H 1.09004 * 109.47284 * 299.99771 * 18 17 16 33 33 H 1.08992 * 109.47195 * 60.00287 * 18 17 16 34 34 H 1.09004 * 109.46630 * 299.99651 * 19 18 17 35 35 H 1.09000 * 109.47109 * 180.02562 * 19 18 17 36 36 H 1.09003 * 109.46878 * 180.02562 * 20 19 18 37 37 H 1.09004 * 109.47427 * 60.00395 * 20 19 18 38 38 H 1.09004 * 109.47284 * 300.00712 * 21 20 19 39 39 H 1.08999 * 109.47547 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.47480 * 299.99793 * 22 17 16 41 41 H 1.09004 * 109.47427 * 59.99963 * 22 17 16 42 42 H 1.09002 * 110.36696 * 265.26054 * 23 13 12 43 43 H 1.08995 * 110.36608 * 143.04891 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.4606 -2.6311 -1.1838 11 6 2.2190 -3.7012 0.1585 12 6 1.3261 -4.7807 0.8058 13 7 0.2038 -4.0866 1.4600 14 6 -0.8106 -4.6778 2.1217 15 8 -1.6861 -3.9997 2.6236 16 7 -0.8551 -6.0208 2.2261 17 6 -1.9582 -6.6635 2.9449 18 6 -1.6371 -6.7044 4.4403 19 6 -2.7887 -7.3761 5.1910 20 6 -2.9739 -8.8026 4.6699 21 6 -3.2950 -8.7617 3.1745 22 6 -2.1439 -8.0899 2.4239 23 6 0.3753 -2.6347 1.2701 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2254 -1.9558 -1.2759 26 1 2.5835 -4.0340 -0.8133 27 1 3.0512 -3.4421 0.8129 28 1 0.9471 -5.4568 0.0393 29 1 1.8989 -5.3417 1.5442 30 1 -0.1572 -6.5618 1.8247 31 1 -2.8751 -6.0962 2.7855 32 1 -0.7200 -7.2717 4.5997 33 1 -1.5047 -5.6881 4.8114 34 1 -3.7059 -6.8091 5.0317 35 1 -2.5602 -7.4048 6.2564 36 1 -3.7947 -9.2809 5.2044 37 1 -2.0567 -9.3696 4.8292 38 1 -4.2122 -8.1946 3.0152 39 1 -3.4274 -9.7779 2.8033 40 1 -2.3725 -8.0608 1.3586 41 1 -1.2269 -8.6573 2.5833 42 1 0.8834 -2.1971 2.1294 43 1 -0.5916 -2.1553 1.1174 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591890776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:08 Heat of formation + Delta-G solvation = -99.951602 kcal Electronic energy + Delta-G solvation = -23159.378544 eV Core-core repulsion = 19817.377108 eV Total energy + Delta-G solvation = -3342.001436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.87255 -38.41441 -37.01939 -34.17426 -33.74463 -32.20008 -30.85895 -30.31400 -28.88955 -27.62277 -24.98963 -22.96738 -22.67821 -21.82701 -20.07218 -19.61977 -19.21515 -17.50847 -16.97993 -16.16216 -15.24851 -15.14941 -14.89423 -14.46843 -14.31073 -14.25450 -13.87906 -13.34565 -13.13332 -12.89888 -12.65235 -12.48434 -12.28424 -12.00968 -11.63756 -11.42498 -11.30108 -11.24596 -10.99603 -10.81098 -10.74913 -10.57609 -10.51521 -10.46601 -10.27302 -10.16564 -9.52698 -9.32492 -8.72846 -8.66256 -8.32503 -7.63953 -6.24370 -4.34414 3.17658 3.25077 3.29977 3.31887 3.81053 4.28011 4.47246 4.59490 4.66637 4.85693 5.02556 5.06095 5.16731 5.35558 5.40177 5.41965 5.44609 5.53129 5.65167 5.67622 5.78429 5.89333 5.94206 5.99775 6.00064 6.04895 6.12665 6.15060 6.31748 6.36849 6.54090 6.73843 6.90444 6.92265 7.02525 7.27782 7.36636 7.71833 7.77461 8.06944 8.60046 8.70202 9.21246 9.33131 9.41294 10.82532 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035531 B = 0.003732 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.864989 B = 7500.034173 C = 7796.868413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.106 3.894 13 N -0.630 5.630 14 C 0.716 3.284 15 O -0.597 6.597 16 N -0.749 5.749 17 C 0.166 3.834 18 C -0.130 4.130 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.126 4.126 23 C 0.114 3.886 24 H 0.270 0.730 25 H 0.381 0.619 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.391 0.609 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.393 -16.211 5.995 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.154 4.154 12 C -0.017 4.017 13 N -0.367 5.367 14 C 0.418 3.582 15 O -0.476 6.476 16 N -0.404 5.404 17 C 0.060 3.940 18 C -0.169 4.169 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.153 4.153 22 C -0.164 4.164 23 C -0.008 4.008 24 H 0.080 0.920 25 H 0.231 0.769 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.224 0.776 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.870 -16.105 6.305 17.531 hybrid contribution 0.488 1.125 -0.034 1.227 sum -2.382 -14.980 6.270 16.413 Atomic orbital electron populations 1.69718 1.05969 1.27973 1.49321 1.25079 0.95032 0.99716 0.93371 0.86468 0.79523 0.82168 0.78764 1.20037 1.21095 1.20034 1.21417 0.93574 0.90103 1.52650 0.91627 1.19627 0.86654 0.91500 0.81448 1.86099 1.51509 1.57152 1.44374 1.22580 0.97513 0.95243 1.00053 1.21945 0.88340 0.96007 0.95433 1.47998 1.23367 1.09722 1.55569 1.15536 0.81779 0.81503 0.79338 1.90874 1.39645 1.63134 1.53952 1.45226 1.28908 1.05340 1.60944 1.20712 0.90386 0.92375 0.90525 1.21958 0.98179 1.01424 0.95346 1.21498 0.99005 0.95686 0.99305 1.21568 1.01398 0.97069 0.95750 1.21469 0.98258 1.00417 0.95158 1.21801 0.99310 0.95098 1.00216 1.23098 1.02457 0.75792 0.99419 0.91960 0.76942 0.90856 0.90447 0.92733 0.93227 0.77576 0.89672 0.92190 0.91240 0.91729 0.91984 0.92084 0.92048 0.91641 0.91735 0.91340 0.91632 0.92619 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.04 10.69 55.43 0.59 -23.45 16 2 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 3 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -14.09 8.27 -34.44 -0.28 -14.38 16 8 H 0.07 1.67 7.79 -52.48 -0.41 1.26 16 9 C 0.25 6.04 0.87 -89.63 -0.08 5.96 16 10 O -0.58 -14.94 13.16 -35.23 -0.46 -15.40 16 11 C -0.12 -2.30 6.13 -24.90 -0.15 -2.45 16 12 C 0.11 1.87 6.17 -2.92 -0.02 1.85 16 13 N -0.63 -13.29 3.34 -176.02 -0.59 -13.88 16 14 C 0.72 14.89 8.46 -86.92 -0.74 14.15 16 15 O -0.60 -14.72 16.26 5.29 0.09 -14.63 16 16 N -0.75 -11.59 5.04 -58.68 -0.30 -11.89 16 17 C 0.17 2.21 2.46 -67.93 -0.17 2.04 16 18 C -0.13 -1.62 5.50 -26.73 -0.15 -1.76 16 19 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 20 C -0.12 -1.00 5.92 -26.73 -0.16 -1.15 16 21 C -0.11 -0.98 5.92 -26.75 -0.16 -1.14 16 22 C -0.13 -1.25 5.39 -26.75 -0.14 -1.39 16 23 C 0.11 2.81 5.38 -2.53 -0.01 2.79 16 24 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.38 10.06 7.56 45.56 0.34 10.40 16 26 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.39 5.11 7.60 -40.82 -0.31 4.80 16 31 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 1.42 8.03 -51.93 -0.42 1.00 16 43 H 0.08 2.35 7.32 -51.93 -0.38 1.97 16 LS Contribution 339.08 15.07 5.11 5.11 Total: -1.00 -29.97 339.08 -9.50 -39.48 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -6.61 Total: 14.25 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -2.31 Total: 4.98 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.29 Total: -49.22 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.38 Total: -30.03 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.97 -9.50 -39.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591890776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.476 kcal (2) G-P(sol) polarization free energy of solvation -29.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds