Wall clock time and date at job start Tue Mar 31 2020 05:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86805 * 119.99782 * 2 1 4 4 H 1.48494 * 109.47266 * 240.00057 * 3 2 1 5 5 H 1.48501 * 109.46927 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47079 * 119.99708 * 3 2 1 7 7 C 1.37873 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99770 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00349 * 0.02562 * 7 2 1 10 10 O 1.42896 * 110.88275 * 303.88200 * 9 7 2 11 11 C 1.55154 * 111.00493 * 180.02562 * 9 7 2 12 12 C 1.54326 * 102.93981 * 206.38551 * 11 9 7 13 13 N 1.47029 * 107.27188 * 22.18919 * 12 11 9 14 14 C 1.34774 * 125.64844 * 181.02141 * 13 12 11 15 15 O 1.21583 * 119.99919 * 180.02562 * 14 13 12 16 16 N 1.34774 * 119.99868 * 0.02923 * 14 13 12 17 17 C 1.46506 * 120.00072 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47289 * 180.02562 * 17 16 14 19 19 C 1.52996 * 109.47131 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47131 * 179.97438 * 19 18 17 21 21 C 1.53002 * 117.49568 * 243.74286 * 20 19 18 22 22 C 1.53006 * 117.49751 * 175.08822 * 20 19 18 23 23 C 1.47423 * 108.69922 * 1.29222 * 13 12 11 24 24 H 0.97002 * 119.99896 * 359.97438 * 1 2 3 25 25 H 0.96699 * 114.00684 * 56.11667 * 10 9 7 26 26 H 1.08997 * 110.72145 * 88.02400 * 11 9 7 27 27 H 1.08996 * 110.87105 * 324.81842 * 11 9 7 28 28 H 1.09000 * 109.88258 * 262.77968 * 12 11 9 29 29 H 1.08994 * 109.88177 * 141.60762 * 12 11 9 30 30 H 0.97001 * 120.00676 * 359.97438 * 16 14 13 31 31 H 1.09001 * 109.47060 * 300.00359 * 17 16 14 32 32 H 1.09004 * 109.47073 * 59.99848 * 17 16 14 33 33 H 1.09001 * 109.46832 * 299.99854 * 18 17 16 34 34 H 1.08996 * 109.46952 * 59.99873 * 18 17 16 35 35 H 1.09001 * 109.46997 * 299.99574 * 19 18 17 36 36 H 1.09004 * 109.47298 * 59.99717 * 19 18 17 37 37 H 1.09000 * 115.55027 * 29.41574 * 20 19 18 38 38 H 1.08994 * 117.50326 * 0.02562 * 21 20 19 39 39 H 1.09009 * 117.49599 * 145.02171 * 21 20 19 40 40 H 1.09008 * 117.49676 * 214.98136 * 22 20 19 41 41 H 1.08994 * 117.50030 * 359.96892 * 22 20 19 42 42 H 1.08998 * 110.36864 * 94.48036 * 23 13 12 43 43 H 1.09007 * 110.36379 * 216.80355 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0005 10 8 0.3515 -2.5680 1.1086 11 6 2.2276 -3.7049 0.0018 12 6 1.3985 -4.8217 -0.6667 13 7 0.3476 -4.1691 -1.4613 14 6 -0.5985 -4.8018 -2.1831 15 8 -1.4210 -4.1575 -2.8048 16 7 -0.6329 -6.1487 -2.2156 17 6 -1.6616 -6.8365 -2.9998 18 6 -1.4778 -8.3496 -2.8667 19 6 -2.5518 -9.0678 -3.6862 20 6 -2.3676 -10.5809 -3.5536 21 6 -2.0188 -11.3637 -4.8211 22 6 -3.4171 -11.4805 -4.2095 23 6 0.5042 -2.7080 -1.3428 24 1 -0.4850 0.8401 0.0004 25 1 -0.2781 -1.8352 1.1502 26 1 2.4969 -3.9821 1.0210 27 1 3.1194 -3.4831 -0.5844 28 1 0.9465 -5.4553 0.0964 29 1 2.0376 -5.4192 -1.3168 30 1 0.0235 -6.6628 -1.7199 31 1 -2.6481 -6.5568 -2.6299 32 1 -1.5719 -6.5500 -4.0477 33 1 -0.4914 -8.6296 -3.2364 34 1 -1.5678 -8.6357 -1.8189 35 1 -3.5384 -8.7879 -3.3169 36 1 -2.4614 -8.7816 -4.7341 37 1 -1.9289 -10.9206 -2.6154 38 1 -1.9202 -10.8009 -5.7492 39 1 -1.3509 -12.2189 -4.7166 40 1 -3.6687 -12.4123 -3.7029 41 1 -4.2391 -10.9944 -4.7349 42 1 1.0957 -2.3213 -2.1727 43 1 -0.4717 -2.2231 -1.3131 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591965548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:41 Heat of formation + Delta-G solvation = -67.666357 kcal Electronic energy + Delta-G solvation = -22168.305633 eV Core-core repulsion = 18827.704190 eV Total energy + Delta-G solvation = -3340.601443 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.61006 -38.11666 -37.34167 -35.12451 -34.20924 -32.13195 -32.06988 -29.96838 -27.84726 -26.56618 -24.73330 -22.72996 -22.56746 -21.75954 -20.75385 -19.61048 -19.33022 -17.52153 -17.03118 -16.12269 -15.80566 -15.43286 -15.00982 -14.86538 -14.62260 -14.31782 -13.83778 -13.53450 -13.01657 -12.84449 -12.63678 -12.36681 -12.04551 -11.99591 -11.84071 -11.59728 -11.46486 -11.24158 -11.11273 -11.00717 -10.77605 -10.56853 -10.50641 -10.48083 -10.16225 -10.15475 -9.58329 -9.36843 -8.77345 -8.65682 -8.34049 -7.63644 -6.26718 -4.36434 3.16398 3.24171 3.29121 3.30994 3.49758 3.80286 4.25786 4.30907 4.53163 4.62245 4.65486 4.83880 4.94861 5.00217 5.10336 5.33105 5.38374 5.44080 5.53234 5.59107 5.63920 5.67294 5.69555 5.80511 5.82025 5.95219 6.05453 6.07417 6.09248 6.18424 6.53674 6.73358 6.83036 6.90279 7.00371 7.26218 7.35456 7.68175 7.76814 8.02995 8.57914 8.67898 9.18554 9.33262 9.49180 10.80487 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.045356 B = 0.002823 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.185150 B = 9914.895842 C =10152.989001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.250 3.750 10 O -0.584 6.584 11 C -0.117 4.117 12 C 0.106 3.894 13 N -0.628 5.628 14 C 0.715 3.285 15 O -0.599 6.599 16 N -0.753 5.753 17 C 0.140 3.860 18 C -0.127 4.127 19 C -0.086 4.086 20 C -0.151 4.151 21 C -0.183 4.183 22 C -0.184 4.184 23 C 0.111 3.889 24 H 0.272 0.728 25 H 0.386 0.614 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.392 0.608 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.057 0.943 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.660 -18.660 -5.282 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.209 3.791 10 O -0.394 6.394 11 C -0.155 4.155 12 C -0.017 4.017 13 N -0.365 5.365 14 C 0.417 3.583 15 O -0.478 6.478 16 N -0.410 5.410 17 C 0.015 3.985 18 C -0.165 4.165 19 C -0.124 4.124 20 C -0.169 4.169 21 C -0.219 4.219 22 C -0.221 4.221 23 C -0.011 4.011 24 H 0.082 0.918 25 H 0.238 0.762 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.226 0.774 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.075 0.925 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.168 -18.616 -5.672 19.581 hybrid contribution 0.446 1.059 0.050 1.150 sum -1.722 -17.557 -5.623 18.515 Atomic orbital electron populations 1.69567 1.06017 1.28089 1.49673 1.25091 0.95043 0.99791 0.93348 0.86440 0.79500 0.82048 0.78780 1.20014 1.21073 1.20008 1.21460 0.93646 0.90124 1.52419 0.91534 1.19621 0.85748 0.91570 0.82205 1.86053 1.51055 1.53032 1.49298 1.22598 0.97839 0.94915 1.00111 1.21915 0.89633 0.96433 0.93759 1.47898 1.29977 1.09362 1.49232 1.15536 0.81401 0.81273 0.80094 1.90877 1.41871 1.65506 1.49511 1.45120 1.35582 1.05115 1.55160 1.21100 0.91371 0.90300 0.95739 1.21763 0.99821 0.93931 1.00968 1.21085 0.99083 0.91717 1.00521 1.22349 1.03785 0.93575 0.97220 1.23058 0.98595 1.02962 0.97331 1.22981 0.92886 1.01658 1.04531 1.23190 1.02308 0.75544 1.00040 0.91812 0.76177 0.90797 0.90511 0.92682 0.93229 0.77415 0.91956 0.92043 0.91264 0.91248 0.91127 0.91443 0.87769 0.88752 0.89020 0.88961 0.88773 0.92514 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.08 10.72 55.43 0.59 -23.48 16 2 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 3 Si 0.91 20.38 29.54 -169.99 -5.02 15.36 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -14.01 8.25 -34.44 -0.28 -14.30 16 8 H 0.07 1.68 7.76 -52.49 -0.41 1.27 16 9 C 0.25 6.09 0.89 -89.51 -0.08 6.01 16 10 O -0.58 -15.18 13.19 -35.23 -0.46 -15.65 16 11 C -0.12 -2.31 6.12 -24.90 -0.15 -2.46 16 12 C 0.11 1.87 6.15 -3.06 -0.02 1.85 16 13 N -0.63 -13.32 3.32 -176.10 -0.59 -13.91 16 14 C 0.72 15.01 8.49 -86.92 -0.74 14.27 16 15 O -0.60 -14.96 16.60 5.29 0.09 -14.87 16 16 N -0.75 -11.63 5.52 -65.22 -0.36 -11.99 16 17 C 0.14 1.80 5.67 -4.04 -0.02 1.78 16 18 C -0.13 -1.15 5.29 -26.73 -0.14 -1.29 16 19 C -0.09 -0.70 5.50 -26.73 -0.15 -0.85 16 20 C -0.15 -1.13 5.73 -90.62 -0.52 -1.65 16 21 C -0.18 -1.28 10.18 -26.69 -0.27 -1.55 16 22 C -0.18 -1.27 10.25 -26.69 -0.27 -1.55 16 23 C 0.11 2.74 5.65 -2.41 -0.01 2.72 16 24 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.39 10.42 6.93 45.56 0.32 10.74 16 26 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.08 1.42 8.02 -51.93 -0.42 1.01 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.39 5.04 7.46 -40.82 -0.30 4.73 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 37 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 38 H 0.09 0.65 8.03 -51.93 -0.42 0.23 16 39 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 40 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 1.42 8.04 -51.93 -0.42 1.01 16 43 H 0.08 2.24 7.64 -51.93 -0.40 1.84 16 LS Contribution 351.38 15.07 5.30 5.30 Total: -1.00 -30.49 351.38 -9.87 -40.36 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -6.66 Total: 14.14 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -2.76 Total: 4.74 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.35 Total: -49.38 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.38 Total: -30.52 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.49 -9.87 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591965548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.305 kcal (2) G-P(sol) polarization free energy of solvation -30.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds