Wall clock time and date at job start Tue Mar 31 2020 06:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00267 * 2 1 4 4 H 1.48494 * 109.47225 * 269.99883 * 3 2 1 5 5 H 1.48504 * 109.46959 * 29.99893 * 3 2 1 6 6 H 1.48498 * 109.46947 * 149.99798 * 3 2 1 7 7 C 1.37880 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99712 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00175 * 0.02562 * 7 2 1 10 10 H 1.08989 * 109.49776 * 59.93450 * 9 7 2 11 11 C 1.53042 * 109.49579 * 179.97438 * 9 7 2 12 12 C 1.53036 * 109.53353 * 181.34535 * 11 9 7 13 13 C 1.53195 * 109.31689 * 298.63170 * 12 11 9 14 14 N 1.46926 * 108.77209 * 54.63959 * 13 12 11 15 15 C 1.34775 * 120.63204 * 126.36629 * 14 13 12 16 16 O 1.21591 * 119.99845 * 185.22196 * 15 14 13 17 17 N 1.34773 * 120.00285 * 5.23104 * 15 14 13 18 18 C 1.46495 * 120.00400 * 175.01573 * 17 15 14 19 19 C 1.53005 * 109.47320 * 179.97438 * 18 17 15 20 20 H 1.08996 * 110.27352 * 59.29798 * 19 18 17 21 21 C 1.54942 * 110.39286 * 181.44546 * 19 18 17 22 22 C 1.55304 * 100.94020 * 155.40406 * 21 19 18 23 23 C 1.54379 * 102.25221 * 325.86428 * 22 21 19 24 24 O 1.43240 * 107.58990 * 21.35887 * 23 22 21 25 25 C 1.46927 * 118.73915 * 306.64217 * 14 13 12 26 26 H 0.97009 * 119.99822 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46144 * 61.33242 * 11 9 7 28 28 H 1.08998 * 109.46243 * 301.36850 * 11 9 7 29 29 H 1.09008 * 109.49834 * 178.68282 * 12 11 9 30 30 H 1.09004 * 109.52873 * 58.60442 * 12 11 9 31 31 H 1.08993 * 109.58824 * 294.85279 * 13 12 11 32 32 H 1.09001 * 109.58797 * 174.41909 * 13 12 11 33 33 H 0.97003 * 119.99509 * 355.00884 * 17 15 14 34 34 H 1.09003 * 109.47351 * 59.99868 * 18 17 15 35 35 H 1.09001 * 109.47197 * 299.99910 * 18 17 15 36 36 H 1.09006 * 111.12743 * 273.32011 * 21 19 18 37 37 H 1.09004 * 111.12739 * 37.48758 * 21 19 18 38 38 H 1.09003 * 110.84602 * 207.67732 * 22 21 19 39 39 H 1.08999 * 110.84641 * 84.05744 * 22 21 19 40 40 H 1.08998 * 109.83318 * 261.84182 * 23 22 21 41 41 H 1.09005 * 109.90380 * 140.91056 * 23 22 21 42 42 H 1.08995 * 109.59166 * 173.14355 * 25 14 13 43 43 H 1.09001 * 109.58790 * 293.57537 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6236 -2.5571 -0.8889 11 6 2.2449 -3.6629 0.0005 12 6 1.4808 -4.9885 -0.0333 13 6 0.6051 -5.1007 1.2186 14 7 -0.2535 -3.9114 1.3032 15 6 -1.5900 -4.0365 1.4241 16 8 -2.2980 -3.0483 1.3977 17 7 -2.1418 -5.2569 1.5746 18 6 -3.5811 -5.3855 1.8154 19 6 -3.9459 -6.8655 1.9476 20 1 -3.3948 -7.3181 2.7719 21 6 -5.4711 -7.0281 2.1669 22 6 -5.6931 -8.4705 1.6358 23 6 -4.6667 -8.5578 0.4858 24 8 -3.6671 -7.5592 0.7211 25 6 0.3719 -2.5831 1.2472 26 1 -0.4850 0.8401 -0.0004 27 1 2.8556 -3.6188 0.9023 28 1 2.8875 -3.5916 -0.8770 29 1 2.1895 -5.8164 -0.0569 30 1 0.8509 -5.0234 -0.9223 31 1 1.2385 -5.1578 2.1037 32 1 -0.0148 -5.9948 1.1520 33 1 -1.5858 -6.0501 1.5234 34 1 -4.1296 -4.9497 0.9802 35 1 -3.8438 -4.8626 2.7350 36 1 -5.7260 -6.9552 3.2242 37 1 -6.0322 -6.3021 1.5784 38 1 -6.7087 -8.5933 1.2594 39 1 -5.4730 -9.2067 2.4089 40 1 -5.1616 -8.3685 -0.4667 41 1 -4.2065 -9.5458 0.4734 42 1 -0.4016 -1.8167 1.1995 43 1 0.9861 -2.4307 2.1347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594688270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:59 Heat of formation + Delta-G solvation = -79.667800 kcal Electronic energy + Delta-G solvation = -22939.798959 eV Core-core repulsion = 19598.677094 eV Total energy + Delta-G solvation = -3341.121865 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.95614 -39.26474 -36.77949 -34.37150 -33.23251 -32.41141 -31.68828 -30.19409 -29.49177 -25.81872 -24.96046 -23.83043 -21.96167 -21.76652 -21.37830 -19.92624 -18.69460 -17.50351 -17.17812 -16.21022 -15.88834 -15.68169 -15.08794 -14.75085 -14.43177 -13.99372 -13.66580 -13.61203 -13.36999 -13.06373 -12.61879 -12.52329 -12.48078 -12.04952 -11.96854 -11.82088 -11.49380 -11.42591 -11.11993 -10.92595 -10.84228 -10.43066 -10.32920 -10.15430 -9.79910 -9.71804 -9.34510 -9.01448 -8.87317 -8.63430 -8.34441 -7.54097 -5.91187 -4.00571 3.24151 3.36272 3.42763 3.45159 3.61333 3.95592 4.17691 4.42043 4.49277 4.57325 4.62668 4.87614 4.94057 5.13896 5.36155 5.37517 5.39185 5.41461 5.49276 5.54329 5.58988 5.70091 5.73536 5.81543 6.00923 6.06744 6.25353 6.39603 6.67191 6.74936 6.77836 6.89256 6.95634 7.07287 7.13316 7.45323 7.60948 7.83167 8.01906 8.15209 8.48759 8.70116 9.03263 9.36732 9.64604 11.13583 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030133 B = 0.003728 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.992411 B = 7508.505323 C = 8137.032477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.039 3.961 10 H 0.028 0.972 11 C -0.109 4.109 12 C -0.133 4.133 13 C 0.116 3.884 14 N -0.623 5.623 15 C 0.700 3.300 16 O -0.585 6.585 17 N -0.753 5.753 18 C 0.144 3.856 19 C 0.069 3.931 20 H 0.076 0.924 21 C -0.148 4.148 22 C -0.155 4.155 23 C 0.050 3.950 24 O -0.375 6.375 25 C 0.129 3.871 26 H 0.263 0.737 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.394 0.606 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.123 0.877 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.344 -18.610 4.941 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.019 3.981 10 H 0.046 0.954 11 C -0.147 4.147 12 C -0.172 4.172 13 C -0.008 4.008 14 N -0.359 5.359 15 C 0.401 3.599 16 O -0.462 6.462 17 N -0.412 5.412 18 C 0.019 3.981 19 C 0.011 3.989 20 H 0.094 0.906 21 C -0.186 4.186 22 C -0.193 4.193 23 C -0.027 4.027 24 O -0.294 6.294 25 C 0.008 3.992 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.230 0.770 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.141 0.859 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.852 -17.673 4.815 20.344 hybrid contribution 0.548 0.313 0.050 0.633 sum -8.304 -17.360 4.865 19.849 Atomic orbital electron populations 1.69911 1.05673 1.26709 1.49228 1.25066 0.94871 0.99197 0.94957 0.86607 0.79794 0.83633 0.78026 1.20751 1.21219 1.19957 1.21075 0.92842 0.90163 1.51888 0.92429 1.18910 0.92642 0.92158 0.94366 0.95368 1.21609 0.98515 0.94135 1.00430 1.21945 0.98589 0.99043 0.97603 1.21485 0.93357 0.87621 0.98386 1.47758 1.03548 1.08803 1.75826 1.15950 0.82607 0.83121 0.78207 1.90921 1.60439 1.36739 1.58132 1.45190 1.08548 1.07487 1.80010 1.21226 0.81802 0.93068 1.02052 1.23279 0.95342 0.92672 0.87577 0.90614 1.23244 0.95434 0.97088 1.02872 1.23117 1.00446 0.97230 0.98499 1.23115 0.89149 0.92124 0.98278 1.88489 1.49062 1.50767 1.41132 1.22068 0.98341 0.80667 0.98078 0.92710 0.93252 0.93130 0.92391 0.92173 0.92270 0.92046 0.77026 0.91241 0.90779 0.89505 0.89679 0.89913 0.90524 0.91305 0.91498 0.85924 0.94356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.33 11.39 55.43 0.63 -25.70 16 2 C 0.06 1.76 5.31 -17.82 -0.09 1.66 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.48 8.56 -34.44 -0.29 -14.77 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.04 0.99 2.24 -91.87 -0.21 0.78 16 10 H 0.03 0.81 8.14 -51.94 -0.42 0.39 16 11 C -0.11 -2.25 5.11 -26.69 -0.14 -2.39 16 12 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 13 C 0.12 1.91 6.39 -3.71 -0.02 1.89 16 14 N -0.62 -13.26 2.98 -178.76 -0.53 -13.79 16 15 C 0.70 15.19 8.30 -86.92 -0.72 14.47 16 16 O -0.58 -15.39 15.77 5.29 0.08 -15.30 16 17 N -0.75 -12.34 5.40 -65.23 -0.35 -12.69 16 18 C 0.14 1.99 5.41 -4.04 -0.02 1.97 16 19 C 0.07 0.71 3.49 -25.70 -0.09 0.62 16 20 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 21 C -0.15 -1.14 6.57 -24.48 -0.16 -1.31 16 22 C -0.16 -1.01 7.02 -24.79 -0.17 -1.18 16 23 C 0.05 0.42 7.79 37.88 0.30 0.72 16 24 O -0.37 -4.47 10.95 -35.23 -0.39 -4.86 16 25 C 0.13 3.26 5.39 -3.93 -0.02 3.24 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.84 5.65 -51.93 -0.29 0.55 16 33 H 0.39 5.58 5.93 -40.82 -0.24 5.34 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.68 8.06 -51.93 -0.42 0.27 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.12 3.63 5.11 -51.93 -0.27 3.36 16 43 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 337.93 15.07 5.09 5.09 Total: -1.00 -33.63 337.93 -9.40 -43.03 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -7.10 Total: 4.31 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.81 Total: 3.28 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.25 Total: -52.19 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.30 Total: -20.16 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.63 -9.40 -43.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594688270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.641 kcal (2) G-P(sol) polarization free energy of solvation -33.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds