Wall clock time and date at job start Tue Mar 31 2020 06:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99952 * 2 1 4 4 H 1.48503 * 109.46980 * 270.00001 * 3 2 1 5 5 H 1.48501 * 109.47218 * 29.99665 * 3 2 1 6 6 H 1.48495 * 109.47135 * 150.00094 * 3 2 1 7 7 C 1.37869 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00317 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99924 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.49104 * 60.06900 * 9 7 2 11 11 C 1.53034 * 109.52707 * 180.14662 * 9 7 2 12 12 C 1.53036 * 109.54190 * 181.33154 * 11 9 7 13 13 C 1.53623 * 109.24458 * 298.51509 * 12 11 9 14 14 N 1.46925 * 108.54087 * 54.85078 * 13 12 11 15 15 C 1.34779 * 120.62970 * 126.37279 * 14 13 12 16 16 O 1.21583 * 120.00136 * 184.94317 * 15 14 13 17 17 N 1.34777 * 119.99840 * 4.93615 * 15 14 13 18 18 C 1.46506 * 119.99735 * 175.01153 * 17 15 14 19 19 C 1.53180 * 109.53788 * 155.00528 * 18 17 15 20 20 C 1.53094 * 109.15930 * 176.84707 * 19 18 17 21 21 O 1.42903 * 109.41499 * 302.38804 * 20 19 18 22 22 C 1.42905 * 114.09614 * 61.16364 * 21 20 19 23 23 C 1.53098 * 109.41200 * 298.83604 * 22 21 20 24 24 C 1.46928 * 118.74191 * 306.09724 * 14 13 12 25 25 H 0.97005 * 119.99818 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46469 * 301.35915 * 11 9 7 27 27 H 1.09006 * 109.45906 * 61.32825 * 11 9 7 28 28 H 1.09004 * 109.49016 * 58.58839 * 12 11 9 29 29 H 1.08995 * 109.49844 * 178.68348 * 12 11 9 30 30 H 1.09004 * 109.73683 * 295.11875 * 13 12 11 31 31 H 1.08992 * 109.66607 * 174.54544 * 13 12 11 32 32 H 0.96999 * 120.00242 * 355.01702 * 17 15 14 33 33 H 1.08996 * 109.61457 * 34.78244 * 18 17 15 34 34 H 1.08999 * 109.52216 * 296.74752 * 19 18 17 35 35 H 1.08993 * 109.52417 * 56.94380 * 19 18 17 36 36 H 1.09003 * 109.48075 * 62.37014 * 20 19 18 37 37 H 1.09001 * 109.47913 * 182.40492 * 20 19 18 38 38 H 1.09000 * 109.47910 * 178.86236 * 22 21 20 39 39 H 1.08992 * 109.49651 * 58.82501 * 22 21 20 40 40 H 1.08999 * 109.52399 * 297.70614 * 23 22 21 41 41 H 1.09003 * 109.57339 * 177.54945 * 23 22 21 42 42 H 1.09006 * 109.58758 * 173.64961 * 24 14 13 43 43 H 1.08996 * 109.58406 * 293.93017 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6249 -2.5576 -0.8908 11 6 2.2445 -3.6633 0.0025 12 6 1.4800 -4.9886 -0.0310 13 6 0.6026 -5.0989 1.2251 14 7 -0.2561 -3.9091 1.3012 15 6 -1.5928 -4.0335 1.4211 16 8 -2.3003 -3.0451 1.3927 17 7 -2.1452 -5.2535 1.5723 18 6 -3.5848 -5.3811 1.8120 19 6 -4.0626 -6.7580 1.3404 20 6 -5.5505 -6.9123 1.6663 21 8 -5.7495 -6.7391 3.0708 22 6 -5.3647 -5.4528 3.5603 23 6 -3.8693 -5.2398 3.3105 24 6 0.3706 -2.5812 1.2503 25 1 -0.4850 0.8401 -0.0004 26 1 2.8887 -3.5933 -0.8740 27 1 2.8536 -3.6184 0.9054 28 1 0.8516 -5.0236 -0.9210 29 1 2.1884 -5.8167 -0.0524 30 1 1.2342 -5.1510 2.1120 31 1 -0.0171 -5.9933 1.1623 32 1 -1.5896 -6.0470 1.5226 33 1 -4.1172 -4.6032 1.2648 34 1 -3.9145 -6.8459 0.2641 35 1 -3.4952 -7.5353 1.8519 36 1 -6.1217 -6.1598 1.1227 37 1 -5.8859 -7.9067 1.3716 38 1 -5.5662 -5.3958 4.6300 39 1 -5.9334 -4.6811 3.0416 40 1 -3.2979 -5.9866 3.8618 41 1 -3.5819 -4.2425 3.6434 42 1 -0.4023 -1.8139 1.2041 43 1 0.9816 -2.4312 2.1403 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595453249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:39 Heat of formation + Delta-G solvation = -82.905303 kcal Electronic energy + Delta-G solvation = -23258.536773 eV Core-core repulsion = 19917.274519 eV Total energy + Delta-G solvation = -3341.262253 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.10368 -39.00045 -36.85484 -34.91979 -33.39731 -31.91956 -31.25429 -30.91501 -29.60824 -25.29176 -24.98671 -23.71283 -23.55835 -21.82014 -20.51682 -20.04141 -18.76093 -17.56032 -16.63139 -16.16338 -16.08575 -15.56038 -14.99119 -14.83928 -14.48112 -14.09515 -13.76873 -13.72493 -13.63137 -13.17126 -12.79215 -12.56113 -12.48189 -12.16661 -11.90750 -11.59669 -11.45308 -11.01270 -10.95659 -10.88665 -10.50299 -10.48025 -10.39835 -10.21217 -9.86882 -9.85975 -9.38580 -9.08308 -8.93269 -8.74816 -8.39825 -7.63286 -5.96328 -4.05741 3.18414 3.32935 3.39679 3.41871 3.72511 3.83375 4.35964 4.46713 4.58770 4.76404 4.82627 5.03968 5.09903 5.23966 5.33051 5.36068 5.40667 5.48892 5.51537 5.60927 5.62792 5.71190 5.87583 5.96762 6.02531 6.15898 6.19710 6.31916 6.59563 6.67662 6.81420 6.84781 7.00277 7.02371 7.06194 7.36575 7.52257 7.76554 7.94862 8.08430 8.42894 8.60232 8.97953 9.26948 9.59802 11.08487 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025617 B = 0.004132 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.757957 B = 6774.827619 C = 7538.983706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.133 4.133 13 C 0.115 3.885 14 N -0.623 5.623 15 C 0.700 3.300 16 O -0.582 6.582 17 N -0.753 5.753 18 C 0.163 3.837 19 C -0.163 4.163 20 C 0.066 3.934 21 O -0.386 6.386 22 C 0.064 3.936 23 C -0.167 4.167 24 C 0.129 3.871 25 H 0.263 0.737 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.390 0.610 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.123 0.877 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.606 -15.457 4.300 17.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.147 4.147 12 C -0.171 4.171 13 C -0.009 4.009 14 N -0.359 5.359 15 C 0.401 3.599 16 O -0.459 6.459 17 N -0.411 5.411 18 C 0.057 3.943 19 C -0.201 4.201 20 C -0.012 4.012 21 O -0.304 6.304 22 C -0.013 4.013 23 C -0.206 4.206 24 C 0.008 3.992 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.226 0.774 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.141 0.859 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.342 -14.693 4.411 17.007 hybrid contribution 1.035 0.676 -0.227 1.256 sum -6.307 -14.017 4.184 15.930 Atomic orbital electron populations 1.69908 1.05690 1.26760 1.49222 1.25057 0.94868 0.99212 0.94881 0.86608 0.79816 0.83587 0.78070 1.20711 1.21195 1.19924 1.21076 0.92869 0.90163 1.51943 0.92412 1.18978 0.92609 0.92168 0.94229 0.95359 1.21611 0.98531 0.94093 1.00493 1.22019 0.98578 0.99114 0.97419 1.21575 0.93333 0.87494 0.98481 1.47798 1.03494 1.08863 1.75775 1.15979 0.82626 0.83214 0.78038 1.90921 1.60392 1.36575 1.58034 1.45406 1.08446 1.07427 1.79828 1.20679 0.81432 0.97126 0.95074 1.22497 0.97803 0.97380 1.02442 1.22522 0.94255 1.02150 0.82255 1.87910 1.85250 1.34177 1.23094 1.22580 0.93906 0.84927 0.99919 1.22645 0.97031 1.03558 0.97374 1.22176 0.98347 0.80601 0.98086 0.92687 0.93085 0.93220 0.92200 0.92386 0.92168 0.92201 0.77435 0.89301 0.90202 0.90700 0.92788 0.88608 0.88723 0.92773 0.91159 0.90069 0.85894 0.94334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.90 11.39 55.43 0.63 -25.27 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.23 8.57 -34.44 -0.29 -14.53 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.78 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.18 5.11 -26.69 -0.14 -2.32 16 12 C -0.13 -2.13 6.10 -26.39 -0.16 -2.30 16 13 C 0.12 1.78 6.42 -3.49 -0.02 1.76 16 14 N -0.62 -12.63 2.97 -178.23 -0.53 -13.16 16 15 C 0.70 14.34 8.27 -86.92 -0.72 13.62 16 16 O -0.58 -14.62 15.39 5.29 0.08 -14.54 16 17 N -0.75 -11.29 4.99 -58.49 -0.29 -11.58 16 18 C 0.16 2.16 2.58 -67.74 -0.18 1.98 16 19 C -0.16 -1.59 5.61 -26.59 -0.15 -1.74 16 20 C 0.07 0.60 6.84 37.21 0.25 0.86 16 21 O -0.39 -4.34 10.77 -35.23 -0.38 -4.72 16 22 C 0.06 0.69 6.84 37.21 0.25 0.94 16 23 C -0.17 -2.07 5.72 -26.59 -0.15 -2.22 16 24 C 0.13 3.15 5.41 -3.71 -0.02 3.13 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.73 5.64 -51.93 -0.29 0.44 16 32 H 0.39 4.79 6.09 -40.82 -0.25 4.54 16 33 H 0.09 1.39 7.51 -51.93 -0.39 1.00 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.12 3.55 5.11 -51.93 -0.27 3.28 16 43 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 333.91 15.07 5.03 5.03 Total: -1.00 -32.33 333.91 -9.18 -41.51 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.08 Total: 4.77 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -1.62 Total: 1.62 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.19 Total: -50.01 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.30 Total: -19.26 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.33 -9.18 -41.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595453249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.394 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds