Wall clock time and date at job start Tue Mar 31 2020 06:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00030 * 2 1 4 4 H 1.48490 * 109.46997 * 239.99588 * 3 2 1 5 5 H 1.48500 * 109.47001 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47112 * 119.99543 * 3 2 1 7 7 C 1.37876 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00328 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00021 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.49787 * 300.06335 * 9 7 2 11 11 C 1.53039 * 109.49977 * 179.97438 * 9 7 2 12 12 C 1.53045 * 109.54094 * 178.68206 * 11 9 7 13 13 C 1.53188 * 109.30880 * 61.36343 * 12 11 9 14 14 N 1.46925 * 108.78181 * 305.36444 * 13 12 11 15 15 C 1.34771 * 120.63604 * 233.58841 * 14 13 12 16 16 O 1.21586 * 120.00209 * 185.03269 * 15 14 13 17 17 N 1.34778 * 119.99874 * 5.03493 * 15 14 13 18 18 C 1.46496 * 120.00179 * 174.92297 * 17 15 14 19 19 C 1.53171 * 109.54441 * 274.55107 * 18 17 15 20 20 C 1.53085 * 109.16773 * 183.15095 * 19 18 17 21 21 O 1.42904 * 109.41554 * 57.60826 * 20 19 18 22 22 C 1.42904 * 114.09737 * 298.84508 * 21 20 19 23 23 C 1.53092 * 109.41306 * 61.15629 * 22 21 20 24 24 C 1.46932 * 118.73350 * 53.86131 * 14 13 12 25 25 H 0.96996 * 119.99723 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.45934 * 58.66433 * 11 9 7 27 27 H 1.08998 * 109.45892 * 298.70175 * 11 9 7 28 28 H 1.08997 * 109.49644 * 301.41517 * 12 11 9 29 29 H 1.08994 * 109.49874 * 181.31312 * 12 11 9 30 30 H 1.09006 * 109.58540 * 185.57682 * 13 12 11 31 31 H 1.09001 * 109.70650 * 65.22557 * 13 12 11 32 32 H 0.97003 * 119.99611 * 354.91457 * 17 15 14 33 33 H 1.09000 * 109.54493 * 34.81932 * 18 17 15 34 34 H 1.09006 * 109.52396 * 63.24041 * 19 18 17 35 35 H 1.08998 * 109.52462 * 303.06144 * 19 18 17 36 36 H 1.08998 * 109.48244 * 297.63047 * 20 19 18 37 37 H 1.09004 * 109.48468 * 177.58784 * 20 19 18 38 38 H 1.09000 * 109.47938 * 181.13836 * 22 21 20 39 39 H 1.08993 * 109.48020 * 301.15801 * 22 21 20 40 40 H 1.09003 * 109.52672 * 62.30054 * 23 22 21 41 41 H 1.09004 * 109.52185 * 182.42473 * 23 22 21 42 42 H 1.09002 * 109.58930 * 65.93122 * 24 14 13 43 43 H 1.09000 * 109.58255 * 186.35434 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6230 -2.5567 0.8896 11 6 2.2450 -3.6629 0.0005 12 6 1.4810 -4.9886 0.0337 13 6 0.6057 -5.1003 -1.2185 14 7 -0.2529 -3.9110 -1.3031 15 6 -1.5892 -4.0360 -1.4256 16 8 -2.2800 -3.0485 -1.5866 17 7 -2.1599 -5.2558 -1.3696 18 6 -3.6191 -5.3835 -1.3909 19 6 -4.1672 -5.2353 0.0317 20 6 -5.6830 -5.4483 0.0110 21 8 -5.9743 -6.7371 -0.5333 22 6 -5.5271 -6.9169 -1.8786 23 6 -4.0049 -6.7629 -1.9337 24 6 0.3736 -2.5828 -1.2577 25 1 -0.4849 0.8400 -0.0004 26 1 2.8872 -3.5919 0.8784 27 1 2.8561 -3.6184 -0.9009 28 1 0.8507 -5.0231 0.9223 29 1 2.1896 -5.8164 0.0572 30 1 -0.0142 -5.9945 -1.1525 31 1 1.2377 -5.1584 -2.1047 32 1 -1.6043 -6.0491 -1.3154 33 1 -4.0437 -4.6087 -2.0292 34 1 -3.9449 -4.2357 0.4054 35 1 -3.7037 -5.9789 0.6800 36 1 -6.1498 -4.6797 -0.6051 37 1 -6.0728 -5.3863 1.0271 38 1 -5.8044 -7.9129 -2.2238 39 1 -5.9919 -6.1677 -2.5194 40 1 -3.5381 -7.5375 -1.3252 41 1 -3.6664 -6.8570 -2.9656 42 1 0.9889 -2.4384 -2.1458 43 1 -0.3994 -1.8154 -1.2175 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595453250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:42 Heat of formation + Delta-G solvation = -83.031807 kcal Electronic energy + Delta-G solvation = -23323.220715 eV Core-core repulsion = 19981.952976 eV Total energy + Delta-G solvation = -3341.267739 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.09874 -38.98950 -36.85638 -34.91967 -33.39397 -31.91766 -31.23427 -30.91178 -29.61448 -25.28700 -24.99084 -23.68625 -23.54922 -21.82138 -20.51159 -20.03531 -18.74340 -17.58664 -16.62020 -16.11810 -16.09474 -15.56002 -14.96822 -14.71184 -14.59851 -14.08929 -13.84206 -13.72036 -13.57851 -13.20561 -12.71224 -12.54797 -12.49148 -12.17556 -11.93744 -11.53658 -11.41348 -11.02086 -10.96505 -10.86255 -10.53381 -10.44347 -10.39833 -10.21891 -9.87372 -9.84390 -9.39525 -9.09332 -8.95017 -8.73394 -8.40740 -7.63677 -5.97404 -4.06355 3.18258 3.33836 3.39211 3.40482 3.74899 3.84581 4.35094 4.46224 4.59668 4.78626 4.84003 5.05709 5.12460 5.25266 5.32484 5.37017 5.41728 5.49941 5.53257 5.60641 5.63415 5.73937 5.89988 5.97533 6.06932 6.15915 6.24275 6.31671 6.59103 6.66841 6.81489 6.85383 6.99258 7.04783 7.07968 7.34504 7.51292 7.75895 7.93807 8.07159 8.42003 8.59981 8.96941 9.26412 9.59101 11.07811 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024554 B = 0.004253 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.058194 B = 6582.520129 C = 7289.315399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.133 4.133 13 C 0.116 3.884 14 N -0.623 5.623 15 C 0.701 3.299 16 O -0.585 6.585 17 N -0.753 5.753 18 C 0.164 3.836 19 C -0.168 4.168 20 C 0.064 3.936 21 O -0.386 6.386 22 C 0.066 3.934 23 C -0.163 4.163 24 C 0.129 3.871 25 H 0.264 0.736 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.390 0.610 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.038 0.962 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.684 -15.447 -3.032 17.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.046 0.954 11 C -0.147 4.147 12 C -0.171 4.171 13 C -0.009 4.009 14 N -0.359 5.359 15 C 0.403 3.597 16 O -0.462 6.462 17 N -0.411 5.411 18 C 0.058 3.942 19 C -0.207 4.207 20 C -0.013 4.013 21 O -0.304 6.304 22 C -0.012 4.012 23 C -0.201 4.201 24 C 0.009 3.991 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.226 0.774 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.057 0.943 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.432 -14.684 -3.046 16.737 hybrid contribution 1.074 0.675 -0.077 1.271 sum -6.358 -14.009 -3.123 15.698 Atomic orbital electron populations 1.69890 1.05725 1.26915 1.49166 1.25051 0.94869 0.99214 0.94832 0.86658 0.79575 0.83215 0.78553 1.20253 1.21264 1.20307 1.21044 0.92847 0.90182 1.52045 0.92451 1.19056 0.92609 0.92155 0.94083 0.95360 1.21613 0.98538 0.94078 1.00506 1.21943 0.98601 0.99134 0.97470 1.21488 0.93344 0.87521 0.98508 1.47800 1.03567 1.08877 1.75667 1.15961 0.82499 0.83177 0.78089 1.90908 1.61748 1.36647 1.56892 1.45399 1.06447 1.07470 1.81784 1.20671 0.80328 0.96957 0.96268 1.22648 0.96172 1.03840 0.98059 1.22588 0.94569 0.84723 0.99424 1.87912 1.80063 1.34120 1.28339 1.22509 0.92543 1.02054 0.84053 1.22498 0.97748 0.97434 1.02426 1.22269 0.98256 0.80509 0.98094 0.92618 0.93080 0.93207 0.92203 0.92364 0.92221 0.92175 0.77416 0.89386 0.89843 0.91105 0.92808 0.88652 0.88658 0.92861 0.90682 0.90314 0.94322 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.84 11.41 55.43 0.63 -25.20 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.22 8.56 -34.44 -0.29 -14.51 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 1.00 2.26 -91.43 -0.21 0.79 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.18 5.10 -26.69 -0.14 -2.31 16 12 C -0.13 -2.13 6.08 -26.61 -0.16 -2.29 16 13 C 0.12 1.79 6.43 -3.71 -0.02 1.76 16 14 N -0.62 -12.63 2.97 -178.23 -0.53 -13.16 16 15 C 0.70 14.37 8.27 -86.92 -0.72 13.66 16 16 O -0.58 -14.63 15.41 5.29 0.08 -14.55 16 17 N -0.75 -11.36 5.00 -58.50 -0.29 -11.65 16 18 C 0.16 2.19 2.59 -67.75 -0.18 2.01 16 19 C -0.17 -2.22 5.72 -26.60 -0.15 -2.37 16 20 C 0.06 0.72 6.84 37.20 0.25 0.98 16 21 O -0.39 -4.45 10.77 -35.23 -0.38 -4.83 16 22 C 0.07 0.61 6.84 37.21 0.25 0.86 16 23 C -0.16 -1.58 5.61 -26.59 -0.15 -1.73 16 24 C 0.13 3.18 5.41 -3.48 -0.02 3.16 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.73 5.57 -51.93 -0.29 0.44 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.39 4.82 6.06 -40.82 -0.25 4.57 16 33 H 0.09 1.36 7.51 -51.93 -0.39 0.97 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.12 3.51 5.18 -51.93 -0.27 3.24 16 LS Contribution 333.92 15.07 5.03 5.03 Total: -1.00 -32.16 333.92 -9.18 -41.34 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -7.08 Total: 5.03 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -1.62 Total: 1.67 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.19 Total: -50.01 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.30 Total: -19.38 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.16 -9.18 -41.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595453250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.696 kcal (2) G-P(sol) polarization free energy of solvation -32.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds