Wall clock time and date at job start Tue Mar 31 2020 05:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46992 * 2 1 4 4 H 1.09001 * 109.47008 * 305.54032 * 3 2 1 5 5 N 1.46903 * 109.46946 * 185.53938 * 3 2 1 6 6 C 1.46897 * 111.00027 * 85.00647 * 5 3 2 7 7 C 1.52997 * 109.47170 * 185.35514 * 6 5 3 8 8 H 1.08999 * 109.47382 * 54.99530 * 7 6 5 9 9 C 1.52996 * 109.47132 * 294.99331 * 7 6 5 10 10 C 1.53001 * 109.47040 * 174.99826 * 7 6 5 11 11 C 1.50696 * 109.47029 * 184.99901 * 10 7 6 12 12 H 1.08002 * 119.99936 * 359.97438 * 11 10 7 13 13 C 1.37880 * 120.00207 * 180.02562 * 11 10 7 14 14 N 1.31519 * 119.99990 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00254 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47226 * 89.99937 * 15 13 11 17 17 H 1.48497 * 109.46984 * 210.00048 * 15 13 11 18 18 H 1.48497 * 109.46824 * 329.99732 * 15 13 11 19 19 C 1.50702 * 109.46870 * 65.54315 * 3 2 1 20 20 N 1.29031 * 124.91090 * 254.71953 * 19 3 2 21 21 C 1.31787 * 117.12010 * 179.81393 * 20 19 3 22 22 C 1.50699 * 122.74610 * 180.22407 * 21 20 19 23 23 C 1.33634 * 114.50004 * 0.47532 * 21 20 19 24 24 S 1.70968 * 124.92106 * 75.02379 * 19 3 2 25 25 H 1.08999 * 109.46870 * 173.88586 * 1 2 3 26 26 H 1.09000 * 109.46893 * 293.87942 * 1 2 3 27 27 H 1.08997 * 109.47287 * 53.88501 * 1 2 3 28 28 H 1.08994 * 109.47488 * 120.00130 * 2 1 3 29 29 H 1.09003 * 109.47321 * 240.00466 * 2 1 3 30 30 H 1.00900 * 110.99688 * 208.95369 * 5 3 2 31 31 H 1.09003 * 109.47084 * 305.35549 * 6 5 3 32 32 H 1.09004 * 109.47328 * 65.34681 * 6 5 3 33 33 H 1.09008 * 109.46520 * 60.00093 * 9 7 6 34 34 H 1.09000 * 109.47632 * 179.97438 * 9 7 6 35 35 H 1.09003 * 109.47633 * 300.00464 * 9 7 6 36 36 H 1.09005 * 109.47256 * 304.99866 * 10 7 6 37 37 H 1.08995 * 109.47358 * 64.99819 * 10 7 6 38 38 H 0.96994 * 120.00092 * 180.02562 * 14 13 11 39 39 H 1.08999 * 109.47497 * 270.24244 * 22 21 20 40 40 H 1.09000 * 109.47582 * 30.24944 * 22 21 20 41 41 H 1.09001 * 109.46892 * 150.24228 * 22 21 20 42 42 H 1.08004 * 126.03718 * 179.79223 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5979 1.9842 -0.8362 5 7 3.5029 1.4447 -0.1337 6 6 3.9027 1.3701 -1.5453 7 6 5.4243 1.2400 -1.6382 8 1 5.7526 0.3847 -1.0477 9 6 6.0789 2.5135 -1.0991 10 6 5.8304 1.0372 -3.0993 11 6 7.3143 0.7867 -3.1780 12 1 7.9084 0.7739 -2.2762 13 6 7.9139 0.5749 -4.4015 14 7 7.1906 0.5910 -5.4998 15 14 9.7532 0.2637 -4.4990 16 1 10.0146 -1.1945 -4.3974 17 1 10.2730 0.7707 -5.7943 18 1 10.4341 0.9677 -3.3828 19 6 1.6528 2.1122 1.2934 20 7 0.7110 2.9850 1.4199 21 6 0.5000 3.4704 2.6269 22 6 -0.5692 4.4913 2.9195 23 6 1.3154 2.9872 3.5689 24 16 2.4026 1.8308 2.8039 25 1 -0.3633 -1.0218 -0.1095 26 1 -0.3633 0.4160 0.9397 27 1 -0.3634 0.6057 -0.8302 28 1 1.8934 -0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 3.9057 2.2544 0.3138 31 1 3.4347 0.5022 -2.0100 32 1 3.5830 2.2752 -2.0618 33 1 5.7894 2.6579 -0.0581 34 1 7.1629 2.4207 -1.1649 35 1 5.7505 3.3689 -1.6896 36 1 5.2951 0.1809 -3.5098 37 1 5.5818 1.9301 -3.6729 38 1 7.6122 0.4416 -6.3604 39 1 -0.1576 5.4934 2.7990 40 1 -1.4010 4.3546 2.2284 41 1 -0.9226 4.3642 3.9428 42 1 1.3086 3.2572 4.6146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602564792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:54 Heat of formation + Delta-G solvation = 15.246656 kcal Electronic energy + Delta-G solvation = -19772.506857 eV Core-core repulsion = 16878.253663 eV Total energy + Delta-G solvation = -2894.253194 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.09881 -37.63040 -35.21243 -32.74209 -31.78399 -31.29735 -27.93820 -27.29851 -26.58352 -24.74510 -23.67270 -22.37072 -20.71720 -19.79831 -18.96976 -17.69141 -16.50071 -15.92907 -15.41726 -15.33070 -14.63387 -14.34421 -14.18212 -13.69955 -13.63210 -13.20560 -12.85483 -12.74933 -12.62517 -12.46082 -12.29339 -11.74737 -11.59802 -11.39052 -11.36953 -11.30379 -10.91332 -10.88546 -10.66919 -10.33596 -10.20644 -9.74556 -9.69828 -9.49078 -9.17138 -8.97894 -8.79742 -8.33268 -8.30832 -5.96662 -3.97736 0.57870 1.28159 1.71403 2.63040 3.33987 3.40308 3.43382 3.72757 4.35208 4.49782 4.70912 4.94726 5.03278 5.05165 5.17750 5.34276 5.39227 5.41571 5.44763 5.52150 5.65661 5.69990 5.71402 5.85839 5.98041 6.03280 6.05662 6.11012 6.26010 6.28197 6.45368 6.55455 6.89671 7.10783 7.16296 7.23857 7.45478 7.66684 7.70655 7.86457 8.03590 8.47260 9.08624 9.65657 11.14870 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.029495 B = 0.003226 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.086764 B = 8676.204424 C = 9043.994896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C 0.159 3.841 4 H 0.073 0.927 5 N -0.683 5.683 6 C 0.064 3.936 7 C -0.082 4.082 8 H 0.067 0.933 9 C -0.134 4.134 10 C 0.028 3.972 11 C -0.512 4.512 12 H 0.056 0.944 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.890 3.110 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.274 1.274 19 C 0.055 3.945 20 N -0.472 5.472 21 C 0.064 3.936 22 C -0.077 4.077 23 C -0.281 4.281 24 S 0.159 5.841 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.340 0.660 31 H 0.072 0.928 32 H 0.028 0.972 33 H 0.031 0.969 34 H 0.063 0.937 35 H 0.040 0.960 36 H 0.015 0.985 37 H 0.014 0.986 38 H 0.259 0.741 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.818 3.898 17.707 23.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C 0.046 3.954 4 H 0.091 0.909 5 N -0.315 5.315 6 C -0.064 4.064 7 C -0.101 4.101 8 H 0.085 0.915 9 C -0.192 4.192 10 C -0.009 4.009 11 C -0.551 4.551 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.199 1.199 19 C -0.223 4.223 20 N -0.187 5.187 21 C -0.068 4.068 22 C -0.137 4.137 23 C -0.420 4.420 24 S 0.414 5.586 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.160 0.840 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -14.201 2.722 17.492 22.695 hybrid contribution 0.174 1.415 -0.250 1.448 sum -14.028 4.137 17.242 22.609 Atomic orbital electron populations 1.21744 0.95555 1.01543 1.01837 1.21564 0.95240 0.94218 1.03710 1.20196 0.89902 0.95542 0.89768 0.90896 1.60801 1.05496 1.47557 1.17693 1.22239 0.98284 1.00206 0.85646 1.21210 0.90569 0.97634 1.00655 0.91465 1.21744 1.02081 0.97645 0.97707 1.19111 0.96173 0.96883 0.88780 1.21232 0.93396 1.47939 0.92508 0.92549 1.25020 0.97923 0.95664 0.95939 1.69964 1.35449 1.50393 0.97862 0.86632 0.85862 0.78421 0.77318 1.20722 1.21351 1.19918 1.27165 0.96438 0.98250 1.00488 1.66157 1.17809 1.10658 1.24125 1.20287 0.99350 1.00081 0.87112 1.20336 0.95519 0.95765 1.02061 1.26934 1.03366 1.06601 1.05137 1.84214 1.34007 1.38561 1.01771 0.92446 0.93277 0.92478 0.91190 0.90133 0.84038 0.90955 0.95362 0.95020 0.91807 0.94046 0.96622 0.96738 0.93103 0.90755 0.90677 0.90902 0.80904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.63 37.16 0.36 -1.25 16 2 C -0.11 -1.30 5.63 -26.73 -0.15 -1.45 16 3 C 0.16 2.09 2.59 -68.86 -0.18 1.91 16 4 H 0.07 1.03 7.86 -51.93 -0.41 0.62 16 5 N -0.68 -9.87 6.07 -107.95 -0.65 -10.53 16 6 C 0.06 1.09 4.91 -3.83 -0.02 1.07 16 7 C -0.08 -1.64 2.55 -90.62 -0.23 -1.87 16 8 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 9 C -0.13 -2.50 8.77 37.16 0.33 -2.18 16 10 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 11 C -0.51 -14.25 8.41 -34.44 -0.29 -14.54 16 12 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 15 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.05 0.70 5.10 -13.45 -0.07 0.63 16 20 N -0.47 -6.27 10.53 -8.06 -0.08 -6.36 16 21 C 0.06 0.72 6.74 -84.22 -0.57 0.15 16 22 C -0.08 -0.62 10.31 36.01 0.37 -0.25 16 23 C -0.28 -2.79 11.13 29.12 0.32 -2.47 16 24 S 0.16 1.75 22.87 -107.50 -2.46 -0.71 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.56 7.60 -51.93 -0.39 0.16 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.00 7.29 -51.93 -0.38 0.63 16 30 H 0.34 4.87 6.71 -39.29 -0.26 4.60 16 31 H 0.07 1.23 7.26 -51.93 -0.38 0.85 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.03 0.50 6.80 -51.92 -0.35 0.14 16 34 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 42 H 0.17 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 352.72 15.07 5.32 5.32 Total: -1.00 -30.11 352.72 -9.63 -39.74 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -7.11 Total: 0.25 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -0.35 Total: -18.17 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.00 Total: -43.08 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.46 Total: -0.71 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.11 -9.63 -39.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602564792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.982 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds