Wall clock time and date at job start Tue Mar 31 2020 05:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47334 * 2 1 4 4 H 1.09002 * 109.47345 * 54.64496 * 3 2 1 5 5 N 1.46899 * 109.47280 * 174.64854 * 3 2 1 6 6 C 1.46898 * 110.99696 * 273.89757 * 5 3 2 7 7 C 1.53001 * 109.46893 * 174.94186 * 6 5 3 8 8 H 1.08996 * 109.47265 * 54.99803 * 7 6 5 9 9 C 1.53007 * 109.47123 * 295.00085 * 7 6 5 10 10 C 1.53000 * 109.47438 * 175.00208 * 7 6 5 11 11 C 1.50690 * 109.47443 * 184.99714 * 10 7 6 12 12 H 1.08000 * 120.00150 * 0.02562 * 11 10 7 13 13 C 1.37882 * 120.00374 * 179.97438 * 11 10 7 14 14 N 1.31524 * 119.99421 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00502 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46984 * 59.99780 * 15 13 11 17 17 H 1.48492 * 109.47095 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46974 * 300.00183 * 15 13 11 19 19 C 1.50705 * 109.47182 * 294.64832 * 3 2 1 20 20 N 1.29030 * 124.91730 * 104.99207 * 19 3 2 21 21 C 1.31783 * 117.12285 * 179.97438 * 20 19 3 22 22 C 1.50698 * 122.74545 * 180.02562 * 21 20 19 23 23 C 1.33639 * 114.50203 * 0.02562 * 21 20 19 24 24 S 1.70981 * 124.91428 * 284.69878 * 19 3 2 25 25 H 1.08994 * 109.47562 * 176.44584 * 1 2 3 26 26 H 1.08995 * 109.47123 * 296.45251 * 1 2 3 27 27 H 1.09003 * 109.47158 * 56.44968 * 1 2 3 28 28 H 1.08993 * 109.47383 * 240.00123 * 2 1 3 29 29 H 1.09000 * 109.47440 * 119.99731 * 2 1 3 30 30 H 1.00902 * 111.00131 * 149.94783 * 5 3 2 31 31 H 1.09002 * 109.47009 * 54.94365 * 6 5 3 32 32 H 1.09003 * 109.47489 * 294.93842 * 6 5 3 33 33 H 1.08999 * 109.47134 * 59.99837 * 9 7 6 34 34 H 1.09005 * 109.46932 * 300.00167 * 9 7 6 35 35 H 1.08998 * 109.47154 * 179.97438 * 9 7 6 36 36 H 1.08999 * 109.47054 * 305.00139 * 10 7 6 37 37 H 1.09006 * 109.46917 * 64.99524 * 10 7 6 38 38 H 0.96999 * 119.99727 * 179.97438 * 14 13 11 39 39 H 1.09006 * 109.47325 * 90.00408 * 22 21 20 40 40 H 1.09004 * 109.47080 * 209.99520 * 22 21 20 41 41 H 1.09000 * 109.47437 * 329.99974 * 22 21 20 42 42 H 1.07995 * 126.03571 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6005 1.9833 0.8381 5 7 3.5033 1.4445 0.1292 6 6 3.9072 1.3946 1.5407 7 6 5.4295 1.2710 1.6314 8 1 5.8940 2.0850 1.0750 9 6 5.8688 -0.0688 1.0370 10 6 5.8607 1.3443 3.0976 11 6 7.3654 1.3460 3.1792 12 1 7.9553 1.3000 2.2757 13 6 7.9892 1.4076 4.4073 14 7 7.2708 1.4642 5.5075 15 14 9.8544 1.4105 4.5085 16 1 10.3880 2.5868 3.7757 17 1 10.2728 1.4815 5.9315 18 1 10.3852 0.1649 3.8985 19 6 1.6488 2.1136 -1.2914 20 7 0.7033 2.9828 -1.4151 21 6 0.4920 3.4734 -2.6198 22 6 -0.5778 4.4949 -2.9079 23 6 1.3043 2.9909 -3.5650 24 16 2.3985 1.8388 -2.8033 25 1 -0.3634 -1.0256 -0.0637 26 1 -0.3633 0.4578 0.9200 27 1 -0.3634 0.5680 -0.8565 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.9062 2.2453 -0.3341 31 1 3.4435 0.5330 2.0210 32 1 3.5862 2.3071 2.0430 33 1 5.5616 -0.1210 -0.0075 34 1 5.4043 -0.8829 1.5935 35 1 6.9533 -0.1566 1.1013 36 1 5.4714 2.2585 3.5455 37 1 5.4687 0.4808 3.6352 38 1 7.7096 1.5071 6.3715 39 1 -0.1656 5.4968 -2.7873 40 1 -0.9340 4.3694 -3.9305 41 1 -1.4076 4.3575 -2.2146 42 1 1.2949 3.2628 -4.6102 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602564793.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:56 Heat of formation + Delta-G solvation = 15.349257 kcal Electronic energy + Delta-G solvation = -19770.705947 eV Core-core repulsion = 16876.457202 eV Total energy + Delta-G solvation = -2894.248745 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.10287 -37.58848 -35.17739 -32.73470 -31.77625 -31.34602 -27.93456 -27.29138 -26.51061 -24.58448 -23.69242 -22.41297 -20.72176 -19.80418 -19.09720 -17.63913 -16.36970 -15.91268 -15.42675 -15.29784 -14.56331 -14.32178 -14.21895 -13.92308 -13.57329 -13.20740 -12.88364 -12.76342 -12.59397 -12.38153 -12.06481 -11.72508 -11.53303 -11.42575 -11.36718 -11.30294 -10.89181 -10.83197 -10.70677 -10.28628 -10.25698 -9.72961 -9.68287 -9.49019 -9.15831 -8.98019 -8.79276 -8.31394 -8.29726 -5.96357 -3.97469 0.57824 1.28039 1.71111 2.63105 3.35405 3.39799 3.42225 3.72695 4.34440 4.49877 4.70944 4.94898 5.03310 5.05409 5.17664 5.34669 5.39299 5.41425 5.44667 5.51426 5.64913 5.66701 5.72622 5.90325 5.97244 6.02908 6.12071 6.14802 6.28631 6.38800 6.53542 6.68740 6.96945 7.15841 7.17798 7.27508 7.46034 7.66658 7.70514 7.86168 8.03781 8.47639 9.08704 9.65793 11.15167 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.027261 B = 0.003228 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.868470 B = 8672.103838 C = 8922.558638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 C 0.159 3.841 4 H 0.074 0.926 5 N -0.680 5.680 6 C 0.064 3.936 7 C -0.081 4.081 8 H 0.054 0.946 9 C -0.122 4.122 10 C 0.028 3.972 11 C -0.513 4.513 12 H 0.056 0.944 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.890 3.110 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.055 3.945 20 N -0.472 5.472 21 C 0.065 3.935 22 C -0.077 4.077 23 C -0.281 4.281 24 S 0.159 5.841 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.339 0.661 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.042 0.958 34 H 0.039 0.961 35 H 0.053 0.947 36 H 0.012 0.988 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.133 1.089 -17.832 23.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C 0.046 3.954 4 H 0.091 0.909 5 N -0.312 5.312 6 C -0.064 4.064 7 C -0.100 4.100 8 H 0.072 0.928 9 C -0.180 4.180 10 C -0.010 4.010 11 C -0.551 4.551 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.718 3.282 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.223 4.223 20 N -0.188 5.188 21 C -0.068 4.068 22 C -0.137 4.137 23 C -0.420 4.420 24 S 0.414 5.586 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.158 0.842 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.031 0.969 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -14.516 -0.072 -17.599 22.813 hybrid contribution 0.189 1.636 0.252 1.666 sum -14.326 1.564 -17.346 22.552 Atomic orbital electron populations 1.21761 0.95603 1.01445 1.02043 1.21545 0.95194 0.94243 1.03621 1.20187 0.89863 0.95507 0.89821 0.90860 1.60769 1.05335 1.48150 1.16941 1.22252 0.98293 1.00150 0.85712 1.21186 0.90906 0.97594 1.00275 0.92782 1.21587 1.01063 0.96583 0.98739 1.19114 0.96046 0.96994 0.88817 1.21196 0.91851 1.49944 0.92149 0.92608 1.25021 0.98034 0.95538 0.95944 1.69959 1.35186 1.50978 0.97569 0.86691 0.86088 0.78582 0.76835 1.20323 1.21390 1.20260 1.27174 0.96332 0.98352 1.00484 1.66158 1.17789 1.10580 1.24234 1.20288 0.99408 1.00012 0.87106 1.20340 0.95510 0.95769 1.02079 1.26933 1.03350 1.06628 1.05105 1.84205 1.33689 1.38895 1.01785 0.92518 0.92531 0.93044 0.91236 0.90220 0.84230 0.91048 0.95290 0.93883 0.94153 0.92776 0.96936 0.96520 0.93047 0.90738 0.90905 0.90677 0.80912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.79 37.16 0.36 -1.25 16 2 C -0.11 -1.26 5.64 -26.73 -0.15 -1.41 16 3 C 0.16 2.07 2.60 -68.86 -0.18 1.89 16 4 H 0.07 1.03 7.84 -51.93 -0.41 0.62 16 5 N -0.68 -9.64 5.55 -107.95 -0.60 -10.24 16 6 C 0.06 1.08 4.84 -3.82 -0.02 1.06 16 7 C -0.08 -1.62 2.52 -90.62 -0.23 -1.84 16 8 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 9 C -0.12 -2.32 8.89 37.16 0.33 -1.99 16 10 C 0.03 0.71 4.45 -27.89 -0.12 0.58 16 11 C -0.51 -14.34 8.41 -34.44 -0.29 -14.63 16 12 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 13 C 0.06 1.59 5.46 -17.81 -0.10 1.49 16 14 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 15 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.05 0.69 4.95 -13.45 -0.07 0.63 16 20 N -0.47 -6.26 10.45 -8.05 -0.08 -6.35 16 21 C 0.06 0.72 6.74 -84.23 -0.57 0.15 16 22 C -0.08 -0.62 10.31 36.00 0.37 -0.25 16 23 C -0.28 -2.78 11.13 29.12 0.32 -2.46 16 24 S 0.16 1.73 22.83 -107.50 -2.45 -0.73 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.59 7.22 -51.93 -0.37 0.21 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.97 7.37 -51.93 -0.38 0.59 16 30 H 0.34 4.78 8.26 -39.29 -0.32 4.46 16 31 H 0.07 1.19 7.35 -51.93 -0.38 0.81 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 1.11 6.95 -51.93 -0.36 0.74 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 354.40 15.07 5.34 5.34 Total: -1.00 -30.21 354.40 -9.63 -39.83 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.21 Total: -0.26 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -0.33 Total: -18.02 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.05 Total: -42.88 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.45 Total: -0.73 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.21 -9.63 -39.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602564793.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.181 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds