Wall clock time and date at job start Tue Mar 31 2020 05:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.33638 * 122.74715 * 84.73330 * 4 2 1 6 6 S 1.76204 * 107.92409 * 179.97438 * 5 4 2 7 7 C 1.70982 * 90.28110 * 0.27465 * 6 5 4 8 8 C 1.50692 * 124.91533 * 179.83906 * 7 6 5 9 9 N 1.46900 * 109.47144 * 270.00019 * 8 7 6 10 10 C 1.46903 * 111.00268 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47497 * 179.97438 * 10 9 8 12 12 H 1.08999 * 109.47126 * 304.99789 * 11 10 9 13 13 C 1.53001 * 109.47165 * 64.99956 * 11 10 9 14 14 C 1.53002 * 109.47327 * 185.00066 * 11 10 9 15 15 C 1.50697 * 109.47315 * 174.99929 * 14 11 10 16 16 H 1.08004 * 119.99813 * 359.97438 * 15 14 11 17 17 C 1.37877 * 120.00347 * 179.97438 * 15 14 11 18 18 N 1.31522 * 119.99523 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00158 * 179.97438 * 17 15 14 20 20 H 1.48490 * 109.47054 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46866 * 120.00547 * 19 17 15 22 22 H 1.48501 * 109.47123 * 239.99966 * 19 17 15 23 23 N 1.29026 * 110.16410 * 359.83943 * 7 6 5 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 1.07999 * 126.03999 * 0.03888 * 5 4 2 32 32 H 1.08999 * 109.47584 * 29.99716 * 8 7 6 33 33 H 1.08997 * 109.47202 * 149.99798 * 8 7 6 34 34 H 1.00897 * 110.99978 * 303.95046 * 9 8 7 35 35 H 1.08999 * 109.46794 * 300.00018 * 10 9 8 36 36 H 1.09000 * 109.47098 * 59.99608 * 10 9 8 37 37 H 1.09005 * 109.46736 * 299.99928 * 13 11 10 38 38 H 1.08999 * 109.47235 * 59.99899 * 13 11 10 39 39 H 1.09003 * 109.47151 * 180.02562 * 13 11 10 40 40 H 1.09005 * 109.46652 * 295.00223 * 14 11 10 41 41 H 1.09000 * 109.47004 * 54.99418 * 14 11 10 42 42 H 0.96998 * 119.99713 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.1761 -0.0992 -2.4100 6 16 2.7837 -1.2839 -3.5642 7 6 2.7764 -2.4853 -2.3476 8 6 3.1955 -3.9188 -2.5485 9 7 2.0304 -4.7179 -2.9508 10 6 2.4018 -6.1244 -3.1555 11 6 1.1652 -6.9231 -3.5719 12 1 0.3772 -6.7851 -2.8316 13 6 0.6757 -6.4312 -4.9355 14 6 1.5240 -8.4076 -3.6640 15 6 0.2805 -9.2080 -3.9537 16 1 -0.6708 -8.7079 -4.0609 17 6 0.3570 -10.5787 -4.0818 18 7 1.5154 -11.1876 -3.9507 19 14 -1.1846 -11.5709 -4.4401 20 1 -2.3498 -10.6559 -4.5405 21 1 -1.0166 -12.3005 -5.7226 22 1 -1.4125 -12.5450 -3.3426 23 7 2.3599 -1.9869 -1.2328 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.9593 0.9380 -2.6189 32 1 3.9568 -3.9691 -3.3269 33 1 3.6019 -4.3124 -1.6169 34 1 1.2850 -4.6357 -2.2757 35 1 3.1578 -6.1902 -3.9379 36 1 2.8025 -6.5330 -2.2278 37 1 0.4200 -5.3736 -4.8698 38 1 1.4636 -6.5692 -5.6759 39 1 -0.2057 -7.0000 -5.2320 40 1 2.2475 -8.5574 -4.4655 41 1 1.9558 -8.7363 -2.7187 42 1 1.5692 -12.1520 -4.0404 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602575833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:01 Heat of formation + Delta-G solvation = 13.023727 kcal Electronic energy + Delta-G solvation = -19242.283547 eV Core-core repulsion = 16347.933960 eV Total energy + Delta-G solvation = -2894.349587 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.21187 -37.07679 -35.49955 -33.94329 -32.03469 -29.85818 -27.81726 -27.18415 -26.58498 -25.03049 -23.91572 -22.24558 -21.10463 -19.41777 -19.14129 -17.93119 -16.34497 -15.68784 -15.52453 -15.11430 -14.84512 -14.54915 -14.30564 -13.96508 -13.85297 -13.16003 -12.87349 -12.69827 -12.49881 -12.26577 -12.20873 -11.98068 -11.53341 -11.45873 -11.40933 -11.33329 -10.97275 -10.85422 -10.74710 -10.28272 -10.26608 -9.74132 -9.68859 -9.51545 -9.17195 -8.96354 -8.80920 -8.32089 -8.23281 -5.96786 -3.97646 0.59751 1.29902 1.69561 2.65397 3.33007 3.40608 3.44887 3.81401 4.43438 4.52029 4.62130 4.71306 4.85252 5.03324 5.06508 5.22722 5.31636 5.39240 5.40999 5.50556 5.51596 5.58046 5.68629 5.71140 5.86106 5.95565 5.99891 6.07383 6.14618 6.38414 6.52907 6.67903 6.97543 7.16062 7.18316 7.28057 7.52302 7.68037 7.70719 7.85868 8.03567 8.47582 9.08895 9.65768 11.14829 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.030298 B = 0.002757 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.922571 B =10152.361664 C =10507.811608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.022 4.022 3 C -0.144 4.144 4 C 0.077 3.923 5 C -0.270 4.270 6 S 0.142 5.858 7 C 0.063 3.937 8 C 0.131 3.869 9 N -0.681 5.681 10 C 0.064 3.936 11 C -0.082 4.082 12 H 0.054 0.946 13 C -0.123 4.123 14 C 0.027 3.973 15 C -0.511 4.511 16 H 0.057 0.943 17 C 0.054 3.946 18 N -0.897 5.897 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 N -0.473 5.473 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.173 0.827 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.344 0.656 35 H 0.070 0.930 36 H 0.029 0.971 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.054 0.946 40 H 0.017 0.983 41 H 0.013 0.987 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.083 25.245 4.850 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.044 4.044 3 C -0.202 4.202 4 C -0.056 4.056 5 C -0.410 4.410 6 S 0.397 5.603 7 C -0.215 4.215 8 C -0.001 4.001 9 N -0.313 5.313 10 C -0.064 4.064 11 C -0.101 4.101 12 H 0.072 0.928 13 C -0.181 4.181 14 C -0.011 4.011 15 C -0.550 4.550 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 N -0.188 5.188 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.191 0.809 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.162 0.838 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.035 0.965 41 H 0.031 0.969 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.491 24.883 3.539 25.375 hybrid contribution -0.964 -0.543 1.422 1.801 sum 2.527 24.341 4.961 24.969 Atomic orbital electron populations 1.21812 0.93690 1.02509 1.01913 1.19689 0.95948 0.94846 0.93869 1.21880 1.01279 0.94898 1.02146 1.20186 1.00727 0.88919 0.95785 1.26810 1.12847 1.05016 0.96289 1.84037 1.59361 1.01225 1.15652 1.26966 1.01878 1.01489 0.91206 1.20472 0.94289 0.84484 1.00858 1.60628 1.08226 1.10916 1.51549 1.22203 0.99547 0.85068 0.99598 1.21202 0.94622 0.97277 0.96981 0.92755 1.21595 1.00883 0.98932 0.96640 1.19130 0.96915 0.88001 0.97012 1.21271 0.94419 0.91596 1.47670 0.92515 1.25025 0.95856 0.98062 0.95665 1.69978 1.23837 1.09151 1.50729 0.86573 0.83637 0.80205 0.77826 1.19752 1.21088 1.21119 1.66116 1.14190 1.11894 1.26567 0.92156 0.92554 0.91989 0.89494 0.91867 0.92425 0.92393 0.80945 0.88979 0.92214 0.83798 0.91201 0.95270 0.94005 0.94084 0.92722 0.96484 0.96858 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.18 37.16 0.34 -0.82 16 2 C -0.02 -0.20 3.33 -91.77 -0.31 -0.50 16 3 C -0.14 -0.95 8.70 37.16 0.32 -0.63 16 4 C 0.08 0.86 5.72 -84.23 -0.48 0.38 16 5 C -0.27 -2.68 10.36 29.12 0.30 -2.38 16 6 S 0.14 1.51 23.18 -107.50 -2.49 -0.98 16 7 C 0.06 0.79 6.90 -13.46 -0.09 0.70 16 8 C 0.13 1.66 6.26 -4.98 -0.03 1.63 16 9 N -0.68 -9.99 5.95 -115.06 -0.68 -10.67 16 10 C 0.06 1.08 5.07 -3.82 -0.02 1.07 16 11 C -0.08 -1.66 2.48 -90.62 -0.22 -1.89 16 12 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 13 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 14 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 15 C -0.51 -14.36 8.41 -34.44 -0.29 -14.65 16 16 H 0.06 1.56 7.06 -52.48 -0.37 1.19 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 19 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 N -0.47 -6.33 10.53 -8.06 -0.08 -6.41 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.34 6.94 -51.93 -0.36 -0.02 16 31 H 0.17 1.28 6.99 -52.49 -0.37 0.91 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.34 5.17 8.72 -39.29 -0.34 4.82 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -30.42 355.71 -9.81 -40.24 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.26 Total: -0.88 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -0.37 Total: -17.12 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: -0.03 Total: -43.40 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.49 Total: -0.98 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.42 -9.81 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602575833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.260 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds