Wall clock time and date at job start Tue Mar 31 2020 05:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46729 * 2 1 4 4 C 1.52996 * 109.47275 * 119.99787 * 2 1 3 5 5 C 1.52996 * 109.47179 * 175.00086 * 4 2 1 6 6 C 1.50709 * 109.47163 * 179.97438 * 5 4 2 7 7 N 1.29023 * 124.91372 * 89.99896 * 6 5 4 8 8 C 1.31784 * 117.12236 * 179.97438 * 7 6 5 9 9 C 1.50706 * 122.74680 * 180.02562 * 8 7 6 10 10 N 1.46901 * 109.46694 * 275.00266 * 9 8 7 11 11 C 1.46904 * 110.99555 * 180.02562 * 10 9 8 12 12 H 1.09001 * 109.46970 * 35.00330 * 11 10 9 13 13 C 1.52997 * 109.47090 * 274.99852 * 11 10 9 14 14 C 1.50703 * 109.46780 * 154.99745 * 11 10 9 15 15 H 1.07993 * 120.00259 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99739 * 180.02562 * 14 11 10 17 17 N 1.31522 * 120.00366 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00016 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.47431 * 89.99883 * 18 16 14 20 20 H 1.48503 * 109.47123 * 209.99750 * 18 16 14 21 21 H 1.48504 * 109.47134 * 329.99637 * 18 16 14 22 22 C 1.33639 * 114.50230 * 0.02562 * 8 7 6 23 23 S 1.70979 * 124.91513 * 270.00245 * 6 5 4 24 24 H 1.08998 * 109.47638 * 299.99924 * 1 2 3 25 25 H 1.09007 * 109.47481 * 60.00147 * 1 2 3 26 26 H 1.09000 * 109.46932 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47371 * 240.00492 * 2 1 3 28 28 H 1.08998 * 109.46999 * 59.99684 * 3 2 1 29 29 H 1.08997 * 109.46833 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47303 * 299.99665 * 3 2 1 31 31 H 1.08996 * 109.46844 * 55.00239 * 4 2 1 32 32 H 1.09000 * 109.47141 * 295.00586 * 4 2 1 33 33 H 1.09004 * 109.46922 * 60.00537 * 5 4 2 34 34 H 1.09000 * 109.47493 * 300.00285 * 5 4 2 35 35 H 1.08991 * 109.47186 * 35.00024 * 9 8 7 36 36 H 1.08996 * 109.46770 * 155.00375 * 9 8 7 37 37 H 1.00895 * 111.00690 * 56.04975 * 10 9 8 38 38 H 1.08997 * 109.46864 * 180.02562 * 13 11 10 39 39 H 1.08994 * 109.46968 * 300.00059 * 13 11 10 40 40 H 1.09001 * 109.46938 * 60.00376 * 13 11 10 41 41 H 0.96994 * 120.00382 * 180.02562 * 17 16 14 42 42 H 1.07997 * 126.03698 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8309 1.1879 6 6 4.0672 -1.5408 2.4188 7 7 4.2265 -2.8170 2.5220 8 6 4.6770 -3.2751 3.6726 9 6 4.9100 -4.7414 3.9312 10 7 3.6529 -5.3687 4.3605 11 6 3.8424 -6.8016 4.6229 12 1 4.8344 -6.9659 5.0437 13 6 3.7082 -7.5819 3.3137 14 6 2.7975 -7.2759 5.5998 15 1 2.0657 -6.5824 5.9867 16 6 2.7760 -8.5952 5.9996 17 7 3.6675 -9.4398 5.5288 18 14 1.4804 -9.1833 7.2100 19 1 0.2822 -9.6479 6.4658 20 1 2.0280 -10.3042 8.0156 21 1 1.1009 -8.0654 8.1109 22 6 4.9102 -2.3330 4.5912 23 16 4.5086 -0.7714 3.8805 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6765 1.9564 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6054 -1.7197 1.2951 32 1 1.7516 -0.1583 2.1369 33 1 3.9994 0.1677 1.1421 34 1 3.8532 -1.3938 0.3002 35 1 5.2613 -5.2202 3.0172 36 1 5.6599 -4.8576 4.7136 37 1 2.9231 -5.2188 3.6802 38 1 3.8484 -8.6451 3.5084 39 1 2.7163 -7.4176 2.8929 40 1 4.4640 -7.2388 2.6071 41 1 3.6521 -10.3680 5.8098 42 1 5.2793 -2.4994 5.5924 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:27 Heat of formation + Delta-G solvation = 16.094835 kcal Electronic energy + Delta-G solvation = -19440.442958 eV Core-core repulsion = 16546.226544 eV Total energy + Delta-G solvation = -2894.216414 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.76904 -37.22695 -35.84084 -33.04174 -32.00114 -29.68909 -28.08517 -27.42191 -25.59279 -25.13007 -24.43043 -21.70588 -20.21515 -20.15681 -19.54293 -17.45563 -16.28512 -15.60258 -15.39731 -14.91554 -14.71509 -14.35906 -14.09341 -13.94457 -13.42035 -13.10301 -12.88341 -12.78661 -12.48814 -12.43399 -12.02932 -11.62769 -11.53399 -11.41629 -11.27716 -11.03261 -10.90998 -10.86710 -10.76132 -10.69083 -10.47924 -10.11965 -9.89586 -9.46766 -9.23220 -8.99202 -8.53500 -8.34177 -7.22036 -5.96277 -3.99488 0.89148 1.51003 1.87991 3.00246 3.34322 3.40406 3.45398 4.09054 4.46598 4.61529 4.64528 4.68431 4.98112 5.16397 5.25010 5.35174 5.39416 5.41112 5.44636 5.52547 5.58747 5.60857 5.63097 5.67317 5.81606 5.83223 5.98161 6.06294 6.12166 6.16534 6.27947 6.45865 6.73827 6.89568 7.12744 7.36868 7.77168 7.90399 7.97318 8.28474 8.54930 8.62395 9.07628 9.65642 11.10805 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.019584 B = 0.003361 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.395777 B = 8329.556151 C = 8972.648348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.151 4.151 4 C -0.110 4.110 5 C -0.041 4.041 6 C 0.049 3.951 7 N -0.463 5.463 8 C 0.083 3.917 9 C 0.131 3.869 10 N -0.678 5.678 11 C 0.212 3.788 12 H 0.034 0.966 13 C -0.169 4.169 14 C -0.494 4.494 15 H 0.062 0.938 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 C -0.238 4.238 23 S 0.086 5.914 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.330 0.670 38 H 0.089 0.911 39 H 0.028 0.972 40 H 0.006 0.994 41 H 0.259 0.741 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.015 20.899 -9.442 22.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.208 4.208 4 C -0.149 4.149 5 C -0.082 4.082 6 C -0.230 4.230 7 N -0.178 5.178 8 C -0.048 4.048 9 C -0.001 4.001 10 N -0.308 5.308 11 C 0.104 3.896 12 H 0.052 0.948 13 C -0.228 4.228 14 C -0.533 4.533 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.377 4.377 23 S 0.339 5.661 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.146 0.854 38 H 0.108 0.892 39 H 0.047 0.953 40 H 0.025 0.975 41 H 0.069 0.931 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.064 21.577 -8.839 23.317 hybrid contribution -0.414 -1.721 -0.012 1.770 sum -0.351 19.856 -8.851 21.742 Atomic orbital electron populations 1.21837 0.95043 1.02019 1.01654 1.21114 0.95924 0.96204 0.98211 1.21923 1.01112 0.96028 1.01757 1.21667 0.93391 1.01649 0.98157 1.20312 0.96227 0.99078 0.92577 1.26951 1.03614 0.92396 1.00008 1.66096 1.15016 1.12040 1.24655 1.20462 0.98499 0.98394 0.87416 1.20453 0.95127 0.85424 0.99096 1.60896 1.04658 1.17097 1.48122 1.19197 0.97664 0.80091 0.92613 0.94773 1.22424 0.97141 1.05647 0.97605 1.21147 1.13977 0.93916 1.24246 0.91970 1.24949 0.96136 0.96739 0.96717 1.69887 1.35269 1.04158 1.44461 0.86504 0.81549 0.78253 0.81115 1.20838 1.21374 1.19885 1.26791 1.12109 0.93323 1.05464 1.83736 1.61351 1.11927 1.09038 0.92658 0.92761 0.92465 0.90954 0.92609 0.92468 0.92799 0.90912 0.91602 0.89805 0.89014 0.94428 0.90139 0.85385 0.89237 0.95332 0.97497 0.93074 0.80577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 2 C -0.10 -0.74 2.92 -90.62 -0.26 -1.00 16 3 C -0.15 -0.99 8.95 37.16 0.33 -0.65 16 4 C -0.11 -1.04 4.66 -26.74 -0.12 -1.16 16 5 C -0.04 -0.41 5.55 -27.88 -0.15 -0.56 16 6 C 0.05 0.66 6.64 -13.45 -0.09 0.57 16 7 N -0.46 -7.70 10.53 -8.05 -0.08 -7.78 16 8 C 0.08 1.43 6.25 -84.22 -0.53 0.90 16 9 C 0.13 2.52 5.92 -4.97 -0.03 2.49 16 10 N -0.68 -15.13 6.22 -109.22 -0.68 -15.80 16 11 C 0.21 5.44 2.57 -68.86 -0.18 5.26 16 12 H 0.03 0.95 7.80 -51.93 -0.40 0.54 16 13 C -0.17 -4.20 8.94 37.16 0.33 -3.86 16 14 C -0.49 -13.93 8.84 -34.44 -0.30 -14.23 16 15 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 16 C 0.05 1.55 5.30 -17.82 -0.09 1.45 16 17 N -0.90 -25.97 11.32 55.43 0.63 -25.35 16 18 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.24 -3.53 11.11 29.12 0.32 -3.21 16 23 S 0.09 1.04 23.18 -107.50 -2.49 -1.45 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.66 6.57 -51.93 -0.34 0.31 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.04 0.74 7.44 -51.93 -0.39 0.35 16 36 H 0.08 1.49 8.01 -51.93 -0.42 1.07 16 37 H 0.33 7.36 8.46 -39.29 -0.33 7.03 16 38 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 39 H 0.03 0.68 8.13 -51.93 -0.42 0.26 16 40 H 0.01 0.14 7.45 -51.93 -0.39 -0.25 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.18 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 352.93 15.07 5.32 5.32 Total: -1.00 -29.73 352.93 -9.89 -39.61 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.12 Total: 3.49 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -0.44 Total: -14.78 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.14 Total: -48.93 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.49 Total: -1.45 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.73 -9.89 -39.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.707 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds