Wall clock time and date at job start Tue Mar 31 2020 05:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47224 * 2 1 4 4 C 1.53004 * 109.47125 * 119.99671 * 2 1 3 5 5 C 1.52999 * 109.46732 * 65.00398 * 4 2 1 6 6 C 1.50701 * 109.46889 * 179.97438 * 5 4 2 7 7 N 1.29032 * 124.91553 * 89.99868 * 6 5 4 8 8 C 1.31781 * 117.12380 * 179.97438 * 7 6 5 9 9 C 1.50697 * 122.75038 * 179.97438 * 8 7 6 10 10 N 1.46905 * 109.47066 * 275.00404 * 9 8 7 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.46917 * 324.99892 * 11 10 9 13 13 C 1.52993 * 109.47269 * 84.99904 * 11 10 9 14 14 C 1.50692 * 109.46945 * 205.00102 * 11 10 9 15 15 H 1.08004 * 120.00412 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00142 * 180.02562 * 14 11 10 17 17 N 1.31522 * 120.00057 * 179.97438 * 16 14 11 18 18 Si 1.86802 * 119.99992 * 359.97438 * 16 14 11 19 19 H 1.48507 * 109.46733 * 90.00010 * 18 16 14 20 20 H 1.48493 * 109.47248 * 210.00007 * 18 16 14 21 21 H 1.48503 * 109.46943 * 330.00498 * 18 16 14 22 22 C 1.33644 * 114.50180 * 0.23564 * 8 7 6 23 23 S 1.70973 * 124.91709 * 269.99515 * 6 5 4 24 24 H 1.09003 * 109.47104 * 299.99913 * 1 2 3 25 25 H 1.09002 * 109.46659 * 60.00018 * 1 2 3 26 26 H 1.08999 * 109.47166 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47587 * 240.00214 * 2 1 3 28 28 H 1.08993 * 109.47059 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.46665 * 300.00110 * 3 2 1 30 30 H 1.09000 * 109.46664 * 59.99649 * 3 2 1 31 31 H 1.09000 * 109.47091 * 305.00204 * 4 2 1 32 32 H 1.09005 * 109.46975 * 184.99785 * 4 2 1 33 33 H 1.09000 * 109.47490 * 60.00051 * 5 4 2 34 34 H 1.08999 * 109.47034 * 299.99888 * 5 4 2 35 35 H 1.09001 * 109.47558 * 155.00568 * 9 8 7 36 36 H 1.08998 * 109.47216 * 35.00230 * 9 8 7 37 37 H 1.00901 * 110.99869 * 56.04737 * 10 9 8 38 38 H 1.09006 * 109.47343 * 180.02562 * 13 11 10 39 39 H 1.09004 * 109.47587 * 300.00069 * 13 11 10 40 40 H 1.09000 * 109.47161 * 60.00137 * 13 11 10 41 41 H 0.97003 * 119.99446 * 179.97438 * 17 16 14 42 42 H 1.07996 * 126.04073 * 179.76487 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1880 6 6 2.1381 -2.9059 2.4182 7 7 1.4807 -3.0268 3.5218 8 6 2.0688 -3.6812 4.5029 9 6 1.4175 -3.8965 5.8447 10 7 1.6591 -2.7266 6.6997 11 6 1.0377 -2.9016 8.0193 12 1 0.1037 -3.4528 7.9108 13 6 1.9873 -3.6816 8.9307 14 6 0.7564 -1.5508 8.6251 15 1 1.0138 -0.6521 8.0842 16 6 0.1713 -1.4621 9.8705 17 7 -0.0737 -0.2831 10.3994 18 14 -0.2732 -3.0164 10.8064 19 1 0.8761 -3.4320 11.6500 20 1 -1.4520 -2.7539 11.6704 21 1 -0.5970 -4.0989 9.8428 22 6 3.2923 -4.1335 4.2123 23 16 3.6623 -3.6686 2.5535 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6053 -0.2617 2.1370 32 1 3.1264 -0.6443 1.2952 33 1 2.0699 -2.6550 0.3003 34 1 0.5490 -2.2723 1.1420 35 1 1.8402 -4.7841 6.3156 36 1 0.3445 -4.0328 5.7101 37 1 1.3336 -1.8809 6.2557 38 1 1.5261 -3.8118 9.9097 39 1 2.1909 -4.6587 8.4925 40 1 2.9214 -3.1303 9.0391 41 1 -0.4857 -0.2208 11.2754 42 1 3.9393 -4.6874 4.8763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:29 Heat of formation + Delta-G solvation = 23.745107 kcal Electronic energy + Delta-G solvation = -19537.549023 eV Core-core repulsion = 16643.664350 eV Total energy + Delta-G solvation = -2893.884674 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.83128 -37.20742 -36.01159 -33.04517 -32.04826 -30.13926 -28.64034 -27.35735 -25.81233 -25.26021 -24.40189 -21.76769 -20.18164 -19.88461 -19.60294 -17.55433 -16.69296 -15.73040 -15.56634 -15.08900 -14.84878 -14.22875 -14.06448 -13.83776 -13.62092 -13.34299 -13.23971 -12.78367 -12.51060 -12.36237 -12.17271 -12.01484 -11.89585 -11.56940 -11.48209 -11.02610 -10.96403 -10.84646 -10.81046 -10.72968 -10.61274 -10.09520 -9.54273 -9.48083 -9.28353 -9.04129 -8.60708 -8.58911 -7.51626 -6.08940 -4.08815 0.83234 1.45600 1.82265 2.93548 3.27258 3.36582 3.39278 4.05786 4.39047 4.59645 4.67667 4.72010 5.03655 5.09054 5.21377 5.25999 5.32466 5.40935 5.45012 5.46607 5.50792 5.53631 5.64831 5.74529 5.84758 5.85864 5.91665 6.00705 6.14757 6.16559 6.22668 6.31879 6.41499 6.52637 6.70029 6.79485 7.38275 7.56493 7.90188 7.92588 8.33014 8.61136 8.95820 9.52813 11.04092 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.017758 B = 0.003740 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.385661 B = 7484.528954 C = 8611.412758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.111 4.111 5 C -0.042 4.042 6 C 0.052 3.948 7 N -0.462 5.462 8 C 0.083 3.917 9 C 0.129 3.871 10 N -0.672 5.672 11 C 0.182 3.818 12 H 0.002 0.998 13 C -0.138 4.138 14 C -0.519 4.519 15 H 0.078 0.922 16 C 0.072 3.928 17 N -0.898 5.898 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.297 1.297 21 H -0.268 1.268 22 C -0.239 4.239 23 S 0.089 5.911 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.041 0.959 37 H 0.344 0.656 38 H 0.037 0.963 39 H 0.025 0.975 40 H 0.058 0.942 41 H 0.264 0.736 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.644 -5.103 -21.629 22.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.150 4.150 5 C -0.083 4.083 6 C -0.227 4.227 7 N -0.177 5.177 8 C -0.048 4.048 9 C -0.003 4.003 10 N -0.304 5.304 11 C 0.074 3.926 12 H 0.020 0.980 13 C -0.195 4.195 14 C -0.557 4.557 15 H 0.096 0.904 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.722 3.278 19 H -0.205 1.205 20 H -0.225 1.225 21 H -0.193 1.193 22 C -0.379 4.379 23 S 0.343 5.657 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.163 0.837 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.508 -5.143 -21.878 23.397 hybrid contribution -1.440 -0.807 1.387 2.156 sum 5.068 -5.950 -20.490 21.931 Atomic orbital electron populations 1.21923 0.95076 1.01996 1.01922 1.21100 0.96111 0.96273 0.97791 1.21842 1.00938 0.95880 1.01930 1.21683 1.01200 0.93166 0.98904 1.20327 1.02600 0.94587 0.90777 1.26978 0.94581 1.02669 0.98465 1.66091 1.35518 1.16603 0.99459 1.20367 0.91945 0.96514 0.95983 1.20488 0.97222 0.96296 0.86314 1.60597 1.63159 1.03083 1.03597 1.19544 0.90689 0.96763 0.85639 0.98000 1.22081 1.01212 0.97883 0.98369 1.21084 1.40145 0.91421 1.03087 0.90371 1.24928 0.94978 0.95962 0.97188 1.69897 1.43248 1.23126 1.17342 0.86798 0.77189 0.83892 0.79945 1.20484 1.22507 1.19337 1.26768 1.01210 1.11301 0.98603 1.83758 1.20367 1.50997 1.10611 0.92284 0.92885 0.92396 0.91249 0.92702 0.92743 0.92399 0.90763 0.91640 0.90009 0.88676 0.90205 0.94135 0.83731 0.94406 0.95568 0.92291 0.92574 0.80664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.95 37.16 0.33 -0.89 16 2 C -0.09 -0.74 2.92 -90.61 -0.26 -1.01 16 3 C -0.15 -1.15 9.19 37.16 0.34 -0.81 16 4 C -0.11 -1.06 4.66 -26.73 -0.12 -1.18 16 5 C -0.04 -0.41 5.55 -27.88 -0.15 -0.57 16 6 C 0.05 0.68 6.64 -13.45 -0.09 0.59 16 7 N -0.46 -7.52 10.53 -8.06 -0.08 -7.60 16 8 C 0.08 1.36 6.25 -84.23 -0.53 0.84 16 9 C 0.13 2.33 5.92 -4.97 -0.03 2.30 16 10 N -0.67 -14.39 6.29 -109.23 -0.69 -15.08 16 11 C 0.18 4.42 2.19 -68.87 -0.15 4.27 16 12 H 0.00 0.06 6.86 -51.93 -0.36 -0.29 16 13 C -0.14 -3.10 8.89 37.15 0.33 -2.77 16 14 C -0.52 -14.82 9.17 -34.44 -0.32 -15.14 16 15 H 0.08 2.42 7.86 -52.48 -0.41 2.01 16 16 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 17 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 18 Si 0.89 22.25 24.37 -169.99 -4.14 18.11 16 19 H -0.28 -6.75 6.87 56.52 0.39 -6.36 16 20 H -0.30 -7.41 7.11 56.52 0.40 -7.00 16 21 H -0.27 -6.44 6.53 56.52 0.37 -6.07 16 22 C -0.24 -3.35 11.12 29.12 0.32 -3.03 16 23 S 0.09 1.03 23.18 -107.50 -2.49 -1.46 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.45 6.57 -51.93 -0.34 0.11 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.95 6.57 -51.93 -0.34 0.60 16 35 H 0.08 1.33 7.39 -51.93 -0.38 0.94 16 36 H 0.04 0.76 8.06 -51.93 -0.42 0.34 16 37 H 0.34 7.74 8.22 -39.29 -0.32 7.41 16 38 H 0.04 0.88 3.27 -51.93 -0.17 0.71 16 39 H 0.03 0.50 7.45 -51.93 -0.39 0.11 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.18 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -30.95 345.78 -8.81 -39.76 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.96 Total: 3.38 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -0.43 Total: -15.40 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.00 Total: -49.59 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.14 Total: 18.11 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.49 Total: -1.46 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.95 -8.81 -39.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.508 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds