Wall clock time and date at job start Tue Mar 31 2020 05:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86789 * 119.99907 * 2 1 4 4 H 1.48496 * 109.47318 * 274.99231 * 3 2 1 5 5 H 1.48500 * 109.47571 * 34.99524 * 3 2 1 6 6 H 1.48503 * 109.47051 * 154.99348 * 3 2 1 7 7 C 1.37874 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99831 * 171.70477 * 7 2 1 9 9 C 1.50704 * 120.00351 * 351.69412 * 7 2 1 10 10 O 1.42900 * 110.88889 * 303.07442 * 9 7 2 11 11 C 1.55160 * 111.03210 * 66.97254 * 9 7 2 12 12 C 1.54341 * 103.01798 * 153.39546 * 11 9 7 13 13 N 1.47027 * 107.26674 * 338.14594 * 12 11 9 14 14 C 1.34767 * 125.64767 * 178.84903 * 13 12 11 15 15 O 1.21591 * 119.99972 * 174.52313 * 14 13 12 16 16 N 1.34781 * 120.00243 * 354.25473 * 14 13 12 17 17 C 1.44576 * 118.63830 * 358.85418 * 16 14 13 18 18 C 1.54310 * 109.90982 * 270.85182 * 17 16 14 19 19 C 1.47092 * 110.29676 * 288.76439 * 18 17 16 20 20 C 1.52565 * 114.32679 * 62.73248 * 19 18 17 21 21 C 1.50888 * 109.35360 * 274.97758 * 20 19 18 22 22 C 1.47606 * 118.64382 * 179.12415 * 16 14 13 23 23 C 1.47423 * 108.70144 * 358.58247 * 13 12 11 24 24 H 0.96996 * 120.00034 * 359.97438 * 1 2 3 25 25 H 0.96701 * 114.00337 * 56.11352 * 10 9 7 26 26 H 1.09001 * 110.72373 * 271.95122 * 11 9 7 27 27 H 1.08997 * 110.71803 * 35.05386 * 11 9 7 28 28 H 1.08995 * 109.99286 * 218.66366 * 12 11 9 29 29 H 1.09006 * 109.77478 * 97.49712 * 12 11 9 30 30 H 1.08990 * 109.45279 * 30.76560 * 17 16 14 31 31 H 1.09008 * 109.44610 * 150.68623 * 17 16 14 32 32 H 1.09002 * 109.40329 * 168.47150 * 18 17 16 33 33 H 1.09004 * 109.27839 * 48.97985 * 18 17 16 34 34 H 1.08997 * 108.51237 * 301.47466 * 19 18 17 35 35 H 1.08997 * 108.51351 * 183.98185 * 19 18 17 36 36 H 1.09001 * 109.49478 * 155.02094 * 20 19 18 37 37 H 1.08998 * 109.49358 * 34.94255 * 20 19 18 38 38 H 1.08998 * 109.36645 * 331.69932 * 21 20 19 39 39 H 1.08994 * 109.26605 * 212.01372 * 21 20 19 40 40 H 1.09001 * 108.94341 * 258.55236 * 22 16 14 41 41 H 1.09000 * 108.94573 * 17.17459 * 22 16 14 42 42 H 1.08994 * 110.36689 * 143.19921 * 23 13 12 43 43 H 1.09007 * 110.36714 * 265.52410 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1073 -1.3947 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4119 0.5919 7 6 2.0045 -1.1941 -0.0005 8 1 3.0760 -1.1989 -0.1355 9 6 1.2629 -2.4924 0.1874 10 8 0.5244 -2.4849 1.4108 11 6 0.3340 -2.7832 -1.0210 12 6 0.2275 -4.3229 -1.0150 13 7 1.3943 -4.8383 -0.2840 14 6 1.6570 -6.1373 -0.0395 15 8 2.7041 -6.4567 0.4897 16 7 0.7567 -7.0820 -0.3765 17 6 -0.4918 -6.6669 -0.9759 18 6 -1.5383 -6.3946 0.1249 19 6 -1.9719 -7.6582 0.7405 20 6 -0.8614 -8.4235 1.4537 21 6 -0.1184 -9.2745 0.4535 22 6 1.0835 -8.4970 -0.1129 23 6 2.2327 -3.6991 0.1317 24 1 -0.4850 0.8400 0.0004 25 1 -0.0960 -1.7476 1.4913 26 1 -0.6445 -2.3260 -0.8741 27 1 0.7867 -2.4325 -1.9484 28 1 0.2339 -4.7008 -2.0374 29 1 -0.6899 -4.6271 -0.5109 30 1 -0.3325 -5.7556 -1.5521 31 1 -0.8569 -7.4540 -1.6358 32 1 -2.4009 -5.8915 -0.3120 33 1 -1.0985 -5.7534 0.8889 34 1 -2.3880 -8.2976 -0.0381 35 1 -2.7596 -7.4396 1.4614 36 1 -1.2957 -9.0622 2.2228 37 1 -0.1708 -7.7171 1.9143 38 1 -0.7904 -9.5446 -0.3611 39 1 0.2362 -10.1803 0.9450 40 1 1.4016 -8.9661 -1.0440 41 1 1.9042 -8.5433 0.6030 42 1 2.6643 -3.8847 1.1152 43 1 3.0195 -3.5198 -0.6011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603429356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:33 Heat of formation + Delta-G solvation = -37.575125 kcal Electronic energy + Delta-G solvation = -24244.221465 eV Core-core repulsion = 20904.924876 eV Total energy + Delta-G solvation = -3339.296589 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.63142 -37.91834 -37.04400 -34.73139 -33.45201 -32.49855 -32.18418 -29.75177 -28.42018 -26.73036 -25.50115 -24.69429 -22.50087 -21.26371 -20.26261 -19.72797 -19.06748 -17.18798 -16.74586 -16.20098 -15.58473 -15.02924 -14.98299 -14.63239 -14.47589 -14.15991 -13.52266 -13.39259 -13.24897 -12.98279 -12.57303 -12.32019 -12.25667 -11.93810 -11.71046 -11.69225 -11.32500 -11.00988 -10.85489 -10.75784 -10.67607 -10.52263 -10.49037 -10.47204 -10.03630 -9.98233 -9.39335 -9.33457 -8.74171 -8.44459 -8.15053 -7.70476 -6.29736 -4.36411 3.01877 3.19229 3.27853 3.33611 3.67246 4.21453 4.30406 4.68449 4.86512 4.89952 4.96376 5.06434 5.16393 5.34418 5.42609 5.58143 5.62558 5.68375 5.75271 5.78777 5.82567 5.93539 5.97908 6.04760 6.11967 6.15583 6.20644 6.26897 6.32645 6.46305 6.48334 6.71744 6.86816 6.93174 7.00899 7.32398 7.36050 7.50285 7.73285 8.00872 8.49203 8.65405 9.07323 9.32211 9.37923 10.76926 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032634 B = 0.004796 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.793034 B = 5836.584129 C = 6225.808061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.249 3.751 10 O -0.581 6.581 11 C -0.139 4.139 12 C 0.086 3.914 13 N -0.623 5.623 14 C 0.717 3.283 15 O -0.603 6.603 16 N -0.619 5.619 17 C 0.056 3.944 18 C -0.143 4.143 19 C -0.111 4.111 20 C -0.117 4.117 21 C -0.128 4.128 22 C 0.131 3.869 23 C 0.140 3.860 24 H 0.267 0.733 25 H 0.380 0.620 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.831 -12.796 -2.823 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.208 3.792 10 O -0.390 6.390 11 C -0.178 4.178 12 C -0.036 4.036 13 N -0.360 5.360 14 C 0.421 3.579 15 O -0.482 6.482 16 N -0.356 5.356 17 C -0.067 4.067 18 C -0.182 4.182 19 C -0.149 4.149 20 C -0.154 4.154 21 C -0.167 4.167 22 C 0.008 3.992 23 C 0.018 3.982 24 H 0.077 0.923 25 H 0.230 0.770 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.144 0.856 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.049 -13.495 -2.420 14.611 hybrid contribution -0.161 1.351 -0.228 1.379 sum -5.210 -12.144 -2.648 13.477 Atomic orbital electron populations 1.69750 1.05935 1.27587 1.50044 1.24975 0.94983 0.99500 0.93466 0.86440 0.80138 0.82578 0.78061 1.20609 1.20958 1.19601 1.21465 0.94701 0.90523 1.50763 0.91651 1.19578 0.87297 0.90913 0.81388 1.86136 1.58925 1.53509 1.40420 1.23279 1.03092 0.89959 1.01472 1.22776 0.89692 0.97258 0.93839 1.47626 1.26198 1.03827 1.58314 1.15577 0.83390 0.79931 0.79041 1.90844 1.26157 1.80608 1.50632 1.46705 1.17356 1.05532 1.66034 1.22952 0.84128 1.03806 0.95809 1.21284 0.99291 0.97916 0.99669 1.20406 0.97975 0.97002 0.99507 1.21053 0.97901 0.98763 0.97724 1.21769 0.97539 0.98365 0.99002 1.21604 0.97709 0.79404 1.00517 1.22210 0.93095 0.83468 0.99440 0.92266 0.76975 0.89640 0.91545 0.92556 0.90526 0.85556 0.91685 0.90939 0.90845 0.92720 0.92773 0.92307 0.91364 0.91884 0.91022 0.92834 0.89409 0.91369 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.55 10.82 55.43 0.60 -21.95 16 2 C 0.07 1.85 5.24 -17.82 -0.09 1.76 16 3 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -13.79 8.24 -34.44 -0.28 -14.08 16 8 H 0.07 1.69 7.79 -52.49 -0.41 1.28 16 9 C 0.25 5.92 0.89 -89.62 -0.08 5.84 16 10 O -0.58 -14.57 13.18 -35.23 -0.46 -15.03 16 11 C -0.14 -2.92 5.48 -24.89 -0.14 -3.06 16 12 C 0.09 1.53 4.86 -3.05 -0.01 1.51 16 13 N -0.62 -12.64 3.33 -210.57 -0.70 -13.34 16 14 C 0.72 14.47 8.30 -86.92 -0.72 13.74 16 15 O -0.60 -14.11 15.91 5.29 0.08 -14.03 16 16 N -0.62 -9.75 2.25 -178.63 -0.40 -10.15 16 17 C 0.06 0.73 4.91 -4.38 -0.02 0.71 16 18 C -0.14 -1.82 4.08 -28.88 -0.12 -1.94 16 19 C -0.11 -1.25 5.15 -29.79 -0.15 -1.40 16 20 C -0.12 -1.37 5.51 -28.01 -0.15 -1.52 16 21 C -0.13 -1.35 5.71 -27.30 -0.16 -1.50 16 22 C 0.13 1.75 6.11 -2.94 -0.02 1.73 16 23 C 0.14 3.18 6.06 -2.53 -0.02 3.17 16 24 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 25 H 0.38 9.54 7.31 45.56 0.33 9.87 16 26 H 0.09 1.87 7.64 -51.93 -0.40 1.47 16 27 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 28 H 0.06 0.87 6.51 -51.93 -0.34 0.54 16 29 H 0.08 1.27 4.03 -51.93 -0.21 1.06 16 30 H 0.13 1.73 2.56 -93.27 -0.24 1.49 16 31 H 0.06 0.72 8.06 -51.92 -0.42 0.30 16 32 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 33 H 0.07 1.18 7.44 -51.93 -0.39 0.79 16 34 H 0.05 0.54 7.36 -51.93 -0.38 0.16 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 1.01 7.48 -51.93 -0.39 0.62 16 38 H 0.06 0.59 7.32 -51.93 -0.38 0.21 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.35 6.94 -51.93 -0.36 0.99 16 42 H 0.07 1.66 8.09 -51.93 -0.42 1.24 16 43 H 0.07 1.50 8.02 -51.93 -0.42 1.08 16 LS Contribution 320.46 15.07 4.83 4.83 Total: -1.00 -28.55 320.46 -9.12 -37.67 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -6.08 Total: 12.08 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -1.97 Total: 4.96 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.50 Total: -45.44 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.38 Total: -29.06 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.55 -9.12 -37.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603429356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.093 kcal (2) G-P(sol) polarization free energy of solvation -28.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds