Wall clock time and date at job start Tue Mar 31 2020 06:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99839 * 2 1 4 4 H 1.48505 * 109.47323 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47259 * 299.99661 * 3 2 1 6 6 H 1.48504 * 109.47261 * 59.99946 * 3 2 1 7 7 C 1.37878 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99790 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.53039 * 109.45870 * 179.97438 * 9 7 2 11 11 C 1.53200 * 109.31170 * 178.62968 * 10 9 7 12 12 N 1.46921 * 108.77433 * 54.63774 * 11 10 9 13 13 C 1.34774 * 120.63148 * 126.37106 * 12 11 10 14 14 O 1.21584 * 119.99969 * 185.22263 * 13 12 11 15 15 N 1.34775 * 120.00058 * 5.22263 * 13 12 11 16 16 C 1.46503 * 120.00211 * 175.02634 * 15 13 12 17 17 C 1.53173 * 109.54378 * 85.17359 * 16 15 13 18 18 C 1.53285 * 109.05964 * 176.85419 * 17 16 15 19 19 O 1.42903 * 109.46266 * 302.44341 * 18 17 16 20 20 C 1.42904 * 114.09581 * 61.15966 * 19 18 17 21 21 C 1.53087 * 109.41564 * 298.84596 * 20 19 18 22 22 C 1.46930 * 118.73684 * 306.63712 * 12 11 10 23 23 C 1.52766 * 109.00453 * 53.31746 * 22 12 11 24 24 H 0.97004 * 120.00273 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.46524 * 299.97250 * 9 7 2 26 26 H 1.08998 * 109.49865 * 58.68013 * 10 9 7 27 27 H 1.08999 * 109.52821 * 298.59763 * 10 9 7 28 28 H 1.09000 * 109.58710 * 294.84671 * 11 10 9 29 29 H 1.08999 * 109.70249 * 174.49526 * 11 10 9 30 30 H 0.97005 * 119.99860 * 355.02173 * 15 13 12 31 31 H 1.09003 * 109.53916 * 324.99478 * 16 15 13 32 32 H 1.08995 * 109.52322 * 296.84019 * 17 16 15 33 33 H 1.08994 * 109.52347 * 57.03641 * 17 16 15 34 34 H 1.09000 * 109.45451 * 182.44926 * 18 17 16 35 35 H 1.08995 * 109.46922 * 62.44988 * 18 17 16 36 36 H 1.08996 * 109.47854 * 178.85907 * 20 19 18 37 37 H 1.09003 * 109.48777 * 58.83493 * 20 19 18 38 38 H 1.09003 * 109.52055 * 297.70097 * 21 20 19 39 39 H 1.09003 * 109.57428 * 177.54719 * 21 20 19 40 40 H 1.09000 * 109.58093 * 173.14684 * 22 12 11 41 41 H 1.08994 * 109.59183 * 293.57099 * 22 12 11 42 42 H 1.09003 * 109.56283 * 185.55032 * 23 22 12 43 43 H 1.08997 * 109.38828 * 65.51463 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2457 -3.6621 0.0005 11 6 1.4766 -4.9866 0.0351 12 7 0.5225 -5.0087 -1.0819 13 6 0.5124 -6.0344 -1.9562 14 8 -0.2155 -5.9965 -2.9293 15 7 1.3091 -7.1020 -1.7517 16 6 1.2198 -8.2635 -2.6401 17 6 2.0990 -8.0342 -3.8733 18 6 2.0595 -9.2867 -4.7561 19 8 2.4969 -10.4169 -3.9989 20 6 1.6840 -10.7060 -2.8597 21 6 1.7086 -9.5128 -1.9009 22 6 -0.4164 -3.8884 -1.2312 23 6 0.3703 -2.5790 -1.2485 24 1 -0.4851 0.8401 -0.0004 25 1 0.6245 -2.5567 0.8905 26 1 2.8881 -3.5915 0.8783 27 1 2.8563 -3.6194 -0.9014 28 1 0.9370 -5.0713 0.9784 29 1 2.1736 -5.8189 -0.0631 30 1 1.9417 -7.1014 -1.0163 31 1 0.1849 -8.4057 -2.9515 32 1 1.7235 -7.1785 -4.4343 33 1 3.1249 -7.8430 -3.5587 34 1 2.7175 -9.1471 -5.6138 35 1 1.0401 -9.4543 -5.1034 36 1 2.0714 -11.5890 -2.3514 37 1 0.6595 -10.8923 -3.1820 38 1 2.7267 -9.3513 -1.5465 39 1 1.0549 -9.7130 -1.0520 40 1 -0.9665 -3.9950 -2.1662 41 1 -1.1135 -3.8817 -0.3935 42 1 -0.3223 -1.7373 -1.2597 43 1 0.9978 -2.5456 -2.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611619404.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:38 Heat of formation + Delta-G solvation = -84.383144 kcal Electronic energy + Delta-G solvation = -23010.212171 eV Core-core repulsion = 19668.885833 eV Total energy + Delta-G solvation = -3341.326337 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.31107 -39.15263 -36.97549 -35.13892 -33.58103 -31.76693 -31.32999 -30.85742 -29.82304 -26.25914 -24.61351 -23.81070 -22.96553 -22.17487 -20.63859 -20.18492 -18.84958 -17.73867 -16.67673 -16.35025 -16.21835 -15.73131 -15.17286 -14.84507 -14.57902 -14.45916 -13.97990 -13.70391 -13.45225 -13.11808 -12.86395 -12.64735 -12.57568 -12.23473 -11.91442 -11.64032 -11.52794 -11.14671 -11.09676 -10.95558 -10.63528 -10.60195 -10.43632 -10.07163 -10.01141 -9.66701 -9.56939 -9.19328 -8.98651 -8.89523 -8.37516 -7.90554 -6.02451 -4.09149 2.95374 3.27346 3.35924 3.39151 3.53115 3.64119 4.15828 4.40757 4.46934 4.65008 4.72369 4.92966 4.99976 5.18962 5.27269 5.27867 5.37892 5.43002 5.48204 5.62307 5.74309 5.77626 5.79517 5.93717 6.03327 6.11555 6.26251 6.41966 6.49172 6.60530 6.65911 6.80740 6.94340 6.97303 7.14223 7.23877 7.48794 7.70786 7.92700 8.05879 8.30035 8.39931 8.93444 8.94489 9.56029 11.02945 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037271 B = 0.003383 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.075541 B = 8274.280286 C = 8341.471335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.050 3.950 10 C -0.124 4.124 11 C 0.113 3.887 12 N -0.618 5.618 13 C 0.705 3.295 14 O -0.600 6.600 15 N -0.748 5.748 16 C 0.165 3.835 17 C -0.168 4.168 18 C 0.064 3.936 19 O -0.385 6.385 20 C 0.066 3.934 21 C -0.164 4.164 22 C 0.126 3.874 23 C -0.124 4.124 24 H 0.260 0.740 25 H 0.027 0.973 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.394 0.606 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.097 0.903 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.104 0.896 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.853 -18.655 -2.806 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.010 4.010 12 N -0.354 5.354 13 C 0.407 3.593 14 O -0.480 6.480 15 N -0.406 5.406 16 C 0.059 3.941 17 C -0.207 4.207 18 C -0.013 4.013 19 O -0.303 6.303 20 C -0.011 4.011 21 C -0.202 4.202 22 C 0.005 3.995 23 C -0.162 4.162 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.231 0.769 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.298 -18.587 -3.536 19.059 hybrid contribution 0.619 1.256 0.532 1.498 sum 2.917 -17.331 -3.004 17.830 Atomic orbital electron populations 1.69854 1.05850 1.26376 1.50788 1.24967 0.94865 0.99085 0.95083 0.86564 0.80120 0.83896 0.77568 1.19870 1.21042 1.21066 1.21221 0.92898 0.90601 1.50406 0.92715 1.18621 0.92564 0.91526 0.94183 1.22011 0.98950 0.94340 1.00896 1.21707 0.91162 0.98923 0.89196 1.47461 1.38161 1.21363 1.28417 1.15881 0.80652 0.80020 0.82774 1.90854 1.46049 1.80912 1.30177 1.45367 1.43224 1.16992 1.35000 1.20706 1.00219 0.83850 0.89328 1.22682 1.01143 0.99240 0.97660 1.22617 1.00132 0.84751 0.93828 1.87927 1.53974 1.48243 1.40178 1.22513 0.95407 0.96769 0.86449 1.22508 1.02948 0.95248 0.99525 1.21680 0.90950 0.85690 1.01223 1.21947 1.00128 0.94969 0.99203 0.93002 0.95478 0.92162 0.92931 0.91943 0.92342 0.76916 0.89616 0.89830 0.90985 0.88639 0.92874 0.88514 0.92868 0.90481 0.90172 0.90563 0.92597 0.87828 0.94407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.74 11.30 55.43 0.63 -24.11 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -13.65 8.56 -34.44 -0.29 -13.94 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.17 2.07 -91.73 -0.19 0.98 16 10 C -0.12 -2.38 5.30 -26.61 -0.14 -2.52 16 11 C 0.11 1.80 6.39 -3.71 -0.02 1.78 16 12 N -0.62 -11.21 2.98 -178.76 -0.53 -11.74 16 13 C 0.71 12.60 8.26 -86.92 -0.72 11.88 16 14 O -0.60 -12.69 15.48 5.29 0.08 -12.61 16 15 N -0.75 -10.06 4.99 -58.50 -0.29 -10.35 16 16 C 0.16 1.92 2.50 -67.75 -0.17 1.75 16 17 C -0.17 -1.93 5.73 -26.49 -0.15 -2.08 16 18 C 0.06 0.62 6.85 37.31 0.26 0.88 16 19 O -0.38 -4.01 10.77 -35.23 -0.38 -4.39 16 20 C 0.07 0.53 6.84 37.20 0.25 0.79 16 21 C -0.16 -1.40 5.61 -26.60 -0.15 -1.55 16 22 C 0.13 2.57 6.41 -3.93 -0.03 2.54 16 23 C -0.12 -2.88 5.14 -26.83 -0.14 -3.02 16 24 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.74 5.64 -51.93 -0.29 0.44 16 30 H 0.39 4.49 6.09 -40.82 -0.25 4.24 16 31 H 0.09 1.13 7.66 -51.93 -0.40 0.74 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 1.59 6.99 -51.93 -0.36 1.23 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.10 2.68 6.03 -51.93 -0.31 2.37 16 43 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 333.79 15.07 5.03 5.03 Total: -1.00 -30.53 333.79 -9.15 -39.68 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -7.08 Total: 3.52 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -1.58 Total: -0.95 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.20 Total: -46.21 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.30 Total: -16.99 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.53 -9.15 -39.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611619404.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.702 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds